FFCP PHASE1:Hg19::chr4:55095396..55095422,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:55095396..55095422,+
|short_description=p3@PDGFRA
|description=CAGE_peak_3_at_PDGFRA_5end
|association_with_transcript=-24bp_to_ENST00000508170_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5156 | |EntrezGene=5156 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8803 | |HGNC=8803 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-24bp_to_ENST00000508170_5end | |||
|cluster_id=chr4:55095396..55095422,+ | |||
|coexpression_cluster_id=C1941 | |||
|description=CAGE_peak_3_at_PDGFRA_5end | |||
|id=chr4:55095396..55095422,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.00e-27!180;CL:0000057!2.29e-21!75;CL:0000187!1.46e-11!54;CL:0000680!3.91e-11!57;CL:0000056!3.91e-11!57;CL:0000355!3.91e-11!57;CL:0002620!7.92e-11!23;CL:0000183!8.97e-11!59;CL:0000393!1.87e-10!60;CL:0000211!1.87e-10!60;CL:0000192!1.34e-08!42;CL:0000514!1.34e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.55e-11;23!CL:0000057;8.01e-09;73!CL:0000723;2.66e-07;61!CL:0000048;4.96e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.66e-22,76;CL:0000187,2.01e-11,55;CL:0002620,3.15e-11,23;CL:0000680,4.78e-11,58;CL:0000056,4.78e-11,58;CL:0000355,4.78e-11,58;CL:0000393,4.61e-10,61;CL:0000211,4.61e-10,61;CL:0000192,2.44e-08,43;CL:0000514,2.44e-08,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!7.84e-19!365;UBERON:0007023!1.86e-18!115;UBERON:0000914!8.30e-17!83;UBERON:0002329!8.30e-17!83;UBERON:0003077!8.30e-17!83;UBERON:0003059!8.30e-17!83;UBERON:0007282!8.30e-17!83;UBERON:0009618!8.30e-17!83;UBERON:0007285!8.30e-17!83;UBERON:0000481!6.15e-15!347;UBERON:0004290!4.20e-14!70;UBERON:0002385!1.20e-12!63;UBERON:0001015!1.20e-12!63;UBERON:0000383!1.20e-12!63;UBERON:0001134!5.63e-12!61;UBERON:0002036!5.63e-12!61;UBERON:0003082!5.63e-12!61;UBERON:0000468!1.98e-11!659;UBERON:0000477!2.54e-11!286;UBERON:0000486!8.41e-11!82;UBERON:0003102!3.15e-10!95;UBERON:0002616!5.01e-10!59;UBERON:0007100!1.65e-09!27;UBERON:0000948!3.05e-09!24;UBERON:0005498!3.05e-09!24;UBERON:0004140!3.05e-09!24;UBERON:0009881!3.05e-09!24;UBERON:0004141!3.05e-09!24;UBERON:0003084!3.05e-09!24;UBERON:0007005!3.05e-09!24;UBERON:0004139!3.05e-09!24;UBERON:0004291!3.05e-09!24;UBERON:0001049!3.74e-09!57;UBERON:0005068!3.74e-09!57;UBERON:0006241!3.74e-09!57;UBERON:0007135!3.74e-09!57;UBERON:0005256!5.03e-09!143;UBERON:0000119!1.17e-08!312;UBERON:0001017!1.42e-08!82;UBERON:0004111!1.75e-08!241;UBERON:0000153!2.26e-08!129;UBERON:0007811!2.26e-08!129;UBERON:0000033!2.34e-08!123;UBERON:0000483!2.91e-08!309;UBERON:0005743!3.54e-08!86;UBERON:0004872!5.61e-08!84;UBERON:0000480!7.64e-08!626;UBERON:0002199!8.43e-08!45;UBERON:0002416!8.43e-08!45;UBERON:0000467!9.03e-08!625;UBERON:0000955!9.27e-08!69;UBERON:0006238!9.27e-08!69;UBERON:0003075!1.12e-07!86;UBERON:0007284!1.12e-07!86;UBERON:0003080!1.49e-07!42;UBERON:0000025!1.99e-07!194;UBERON:0002780!3.49e-07!41;UBERON:0001890!3.49e-07!41;UBERON:0006240!3.49e-07!41;UBERON:0000073!3.56e-07!94;UBERON:0001016!3.56e-07!94;UBERON:0002346!4.54e-07!90;UBERON:0000479!4.63e-07!787;UBERON:0004121!5.06e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0007100;6.93e-09;25!UBERON:0000948;1.37e-08;22!UBERON:0001013;9.19e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,5.61e-19,114;UBERON:0010314,1.83e-15,132;UBERON:0007524,1.09e-14,73;UBERON:0003077,3.29e-14,72;UBERON:0007285,3.29e-14,72;UBERON:0002329,4.03e-14,71;UBERON:0003059,4.03e-14,71;UBERON:0007282,4.03e-14,71;UBERON:0004290,4.03e-14,71;UBERON:0009618,4.03e-14,71;UBERON:0002385,1.31e-12,64;UBERON:0001015,1.31e-12,64;UBERON:0000383,1.31e-12,64;UBERON:0001134,6.41e-12,62;UBERON:0002036,6.41e-12,62;UBERON:0003082,6.41e-12,62;UBERON:0000486,4.54e-11,83;UBERON:0007503,6.04e-11,78;UBERON:0000479,1.34e-10,773;UBERON:0003104,1.82e-10,160;UBERON:0009142,1.82e-10,160;UBERON:0007100,6.72e-10,27;UBERON:0000948,1.27e-09,24;UBERON:0005498,1.27e-09,24;UBERON:0004140,1.27e-09,24;UBERON:0009881,1.27e-09,24;UBERON:0004141,1.27e-09,24;UBERON:0003084,1.27e-09,24;UBERON:0007005,1.27e-09,24;UBERON:0004139,1.27e-09,24;UBERON:0004291,1.27e-09,24;UBERON:0003102,5.48e-09,99;UBERON:0005256,8.28e-09,122;UBERON:0001049,9.41e-09,56;UBERON:0005068,9.41e-09,56;UBERON:0006241,9.41e-09,56;UBERON:0007135,9.41e-09,56;UBERON:0000119,1.48e-08,309;UBERON:0000483,3.76e-08,306;UBERON:0000073,4.37e-08,53;UBERON:0002616,4.37e-08,53;UBERON:0002199,4.67e-08,46;UBERON:0002416,4.67e-08,46;UBERON:0001017,5.82e-08,81;UBERON:0003075,6.39e-08,82;UBERON:0007284,6.39e-08,82;UBERON:0004111,9.62e-08,240;UBERON:0004872,1.05e-07,83;UBERON:0000955,2.55e-07,68;UBERON:0006238,2.55e-07,68;UBERON:0002780,4.48e-07,41;UBERON:0001890,4.48e-07,41;UBERON:0003080,4.48e-07,41;UBERON:0006240,4.48e-07,41;UBERON:0002346,4.58e-07,86;UBERON:0000025,6.08e-07,192;UBERON:0011216,7.62e-07,223;UBERON:0002097,8.59e-07,41;UBERON:0001013,9.84e-07,14 | |||
|phase1_expression=26.8884001320424,16.2716398157147,24.526066312699,12.0087958023756,12.5149106439641,18.3191090061077,5.06599756336621,22.1101955699391,20.1112933713876,5.16041266653169,0,0,0,97.7754188384368,44.0758509718128,5.3786011716142,4.21886169616784,7.30310090387373,5.85519358548608,1.10808952269109,1.42800483870977,1.56727360739044,3.43483184557268,2.05311637609326,0.753255837568817,0,0,0,0,0,0,0,0,0,0,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,70.7039912310489,47.6197610389582,37.0801429346238,22.4092274478431,39.1043570295994,23.7548291095751,11.9292892057665,13.6257763684738,0.378139268656271,0,0.087834785693126,13.4908447762644,0,0,0,0,0,0,0,0,0,1.72046919021225,0,0,0,0,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,10.933382937297,30.6445838228283,23.1716066423133,88.9193524321323,23.0534448428932,7.8494864019923,2.1349799145941,0,83.7157685225371,18.0512300573382,22.5577426296573,39.0502163323923,33.4182036198399,3.28050004567315,9.05264222807929,7.98660550162229,11.3580997219369,13.8572708399643,10.0361225508242,12.9214742166069,58.5922471501544,33.1652656741773,49.8030265267189,92.6642228680002,26.4575614328056,2.73048408581408,1.43723628363248,46.9657757931845,32.2805781269668,29.6458603568076,19.7539929396377,11.9530240361618,22.6859468948961,18.6028780382434,25.1145489964407,34.3827395997894,26.2795557437857,45.0136644126603,36.9958579965996,13.3973080823727,14.8893485065272,47.4261493597958,19.0002160064337,33.068824425979,64.9872284414633,84.5408877162386,46.1512470271599,13.8030374571867,13.90396856946,0,0,0,0,0.132529768321485,1.2781333715647,0.621966330092223,0.504641701751257,0,12.5159625863853,8.36213219650751,11.0507937081984,35.7563304584624,18.0469870417396,0,0,0,0,0,0,0,0,0,0,1.40241773803446,10.7009242946164,4.41026134156626,1.26755034821831,0,12.4065880403095,0,0.245976877086227,3.43135620597051,0,0,0.100528972411631,0,1.62904152655162,4.15973914111831,0,9.27443239800615,1.29149563659404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4512968087854,0.144119953416961,0.50496973370552,2.85740524314761,0,0,3.4214489204541,0.925447434329912,0,0,7.06425831375773,5.66748089483264,13.1275531619501,8.01484637698222,10.7296933755565,3.381211010224,13.5628439458284,5.2003718455683,2.31486636835928,1.41849132023278,1.8649552531127,111.093901072381,34.1851611396609,3.29296134712308,8.79487697593085,99.8651375966554,15.0470855857352,12.6604538365026,1.74306691720059,3.89894665610022,0,0,0,4.55287225434007,4.59447743336456,0,10.1346914667305,1.02738161275192,0,0,0,0,0,35.0650581427,9.10978977003352,3.09315525111078,3.68535783735567,3.82763250991898,0,0,0,133.120268515267,34.011595432058,16.5471664456839,15.3898437532797,12.4900292158013,6.62350143142526,32.2138891229961,14.7463588866582,0,10.3473071292505,12.6202863721733,5.34670588770939,28.324058316595,2.34961388955289,3.77457766191941,0,0,0,0,0,1.81434175997808,9.6762045049323,12.5838818096211,5.05188169979532,8.71346214938766,12.2809739776009,7.07757253031873,10.3892646511494,8.48153315914606,12.2517590466058,26.7734528605018,13.5006151587741,12.0858793598358,0.120859449591622,0,0,12.3999604017775,2.54927635209404,7.34296723772775,0,0,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0.325378394664303,22.0507764926126,1.64825036673018,2.14524699793529,0,0.650060246036521,49.8120182516895,14.5972784621104,3.08097234229289,6.7541616879497,5.37562632689669,37.4896654590275,13.7765859218517,5.11359764496605,34.8115259378743,0,0,0,0,0,29.5923606020802,18.8200062943362,89.6377718312418,6.38767236380426,25.2280567701771,9.08088673609208,4.43687148900173,13.397701296948,9.17500331684305,7.24394736910534,1.535386747868,6.41908482050881,80.1872184773361,4.70969184119538,19.0664805038314,15.099536635483,8.60030537123511,8.28948174450596,3.17020642346017,8.42516912477962,1.95053495635836,25.5899164112849,4.22600587027022,15.8339897233263,13.5749214675564,45.2032466480971,30.3250938950368,11.941901554342,10.5228212460903,1.73632660280006,11.8061055368394,0.202910376962704,0.92947049429925,1.69017361519345,19.360532547547,14.4426090289288,0,14.8999646909651,36.3105132711982,46.1012850143863,5.69209760648573,7.69856384538962,0,0,0,25.3246824089536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.91503773203424,0,0,0,153.204296105893,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.8246675070519,0,0,0,0,1.18785872333055,0,8.94732882989668,18.0056853005456,6.56721359635145,0,0,13.5488632010727,14.0904796920885,0,0,0,14.618860620105,0,0,0,39.0627886322257,0,6.66821940867821,10.6626602070474,6.49376687132959,15.9691038400955,0,0,20.2999881121742,0,0,0,0,0,2.2571249341328,5.31444831488303,12.421433178417,1.52581736317083,4.75490817704266,2.06883333267483,4.16832254592548,0,0,44.8620007077137,38.5124148762864,0,0,0,3.19001159731919,43.60045445928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| ||
|short_description=p3@PDGFRA | |||
}} | }} |
Latest revision as of 00:47, 18 September 2015
Short description: | p3@PDGFRA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PDGFRA_5end |
Coexpression cluster: | C1941_Fibroblast_Nucleus_Mesenchymal_tenocyte_Anulus_Smooth_acute |
Association with transcript: | -24bp_to_ENST00000508170_5end |
EntrezGene: | PDGFRA |
HGNC: | 8803 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.66e-22 | 76 |
muscle cell | 2.01e-11 | 55 |
skin fibroblast | 3.15e-11 | 23 |
muscle precursor cell | 4.78e-11 | 58 |
myoblast | 4.78e-11 | 58 |
multi-potent skeletal muscle stem cell | 4.78e-11 | 58 |
electrically responsive cell | 4.61e-10 | 61 |
electrically active cell | 4.61e-10 | 61 |
smooth muscle cell | 2.44e-08 | 43 |
smooth muscle myoblast | 2.44e-08 | 43 |