FFCP PHASE1:Hg19::chr3:11610255..11610280,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:11610255..11610280,-
|short_description=p8@VGLL4
|description=CAGE_peak_8_at_VGLL4_5end
|association_with_transcript=117bp_to_ENST00000424529,NM_001128221,...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9686 | |EntrezGene=9686 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28966 | |HGNC=28966 | ||
|TSSclassifier=strong | |||
|UniProt=Q0H0I7,Q14135 | |UniProt=Q0H0I7,Q14135 | ||
|association_with_transcript=117bp_to_ENST00000424529,NM_001128221,uc010hdv.1_5end | |||
|cluster_id=chr3:11610255..11610280,- | |||
|description=CAGE_peak_8_at_VGLL4_5end | |||
|id=chr3:11610255..11610280,- | |||
|ontology_enrichment_celltype=CL:0000055!4.79e-13!180;CL:0002139!5.57e-11!24;CL:0000213!4.47e-10!57;CL:0000215!4.47e-10!57;CL:0000071!9.86e-10!18;CL:0002546!9.86e-10!18;CL:0000115!1.10e-09!35;CL:0002078!5.63e-09!44;CL:0000222!1.11e-07!119;CL:0000057!2.29e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002139;7.17e-13;24!CL:0000115;2.30e-11;36!CL:0000071;8.88e-10;18!CL:0002078;1.55e-07;45!CL:1000413;6.50e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,7.22e-13,36;CL:0002139,7.39e-13,24;CL:0002078,2.92e-11,45;CL:0000071,7.84e-10,18;CL:0002546,7.84e-10,18;CL:0000213,8.77e-10,58;CL:0000215,8.77e-10,58;CL:1000413,5.43e-07,9 | |||
|ontology_enrichment_development_v019=CL:0002546;8.88e-10;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005743!2.28e-14!86;UBERON:0000073!2.33e-13!94;UBERON:0001016!2.33e-13!94;UBERON:0000955!2.49e-13!69;UBERON:0006238!2.49e-13!69;UBERON:0001017!4.84e-13!82;UBERON:0000033!7.25e-12!123;UBERON:0002616!8.36e-11!59;UBERON:0000477!1.15e-10!286;UBERON:0003075!3.17e-10!86;UBERON:0007284!3.17e-10!86;UBERON:0000153!4.42e-10!129;UBERON:0007811!4.42e-10!129;UBERON:0000475!5.18e-10!365;UBERON:0002049!7.85e-10!79;UBERON:0007798!7.85e-10!79;UBERON:0001986!9.86e-10!18;UBERON:0004638!9.86e-10!18;UBERON:0004852!9.86e-10!18;UBERON:0001049!1.27e-09!57;UBERON:0005068!1.27e-09!57;UBERON:0006241!1.27e-09!57;UBERON:0007135!1.27e-09!57;UBERON:0000025!2.62e-09!194;UBERON:0001893!2.69e-09!34;UBERON:0002346!3.32e-09!90;UBERON:0002780!4.81e-09!41;UBERON:0001890!4.81e-09!41;UBERON:0006240!4.81e-09!41;UBERON:0002791!7.82e-09!33;UBERON:0000483!1.05e-08!309;UBERON:0002020!1.11e-08!34;UBERON:0003528!1.11e-08!34;UBERON:0000119!1.16e-08!312;UBERON:0001869!1.31e-08!32;UBERON:0003080!1.53e-08!42;UBERON:0004111!1.76e-08!241;UBERON:0003056!2.24e-08!61;UBERON:0000468!3.94e-08!659;UBERON:0000055!6.88e-08!69;UBERON:0004121!7.76e-08!169;UBERON:0000487!7.82e-08!22;UBERON:0000956!1.10e-07!25;UBERON:0000203!1.10e-07!25;UBERON:0006914!2.16e-07!25;UBERON:0000924!2.82e-07!173;UBERON:0006601!2.82e-07!173;UBERON:0002619!9.06e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;8.88e-10;18!UBERON:0001986;8.88e-10;18!UBERON:0004852;8.88e-10;18!UBERON:0000487;8.51e-09;22!UBERON:0002619;1.67e-08;22!UBERON:0001893;2.22e-08;34!UBERON:0000956;3.52e-08;25!UBERON:0000203;3.52e-08;25!UBERON:0002780;7.72e-08;41!UBERON:0001890;7.72e-08;41!UBERON:0001869;1.01e-07;32!UBERON:0002791;1.13e-07;32!UBERON:0006914;2.68e-07;25!UBERON:0003915;6.50e-07;9!UBERON:0004700;6.50e-07;9!UBERON:0001917;6.50e-07;9!UBERON:0001950;7.21e-07;20!UBERON:0000349;7.41e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000955,1.29e-11,68;UBERON:0006238,1.29e-11,68;UBERON:0001017,7.43e-11,81;UBERON:0001016,3.20e-10,89;UBERON:0004638,7.84e-10,18;UBERON:0001986,7.84e-10,18;UBERON:0004852,7.84e-10,18;UBERON:0002780,1.08e-09,41;UBERON:0001890,1.08e-09,41;UBERON:0003080,1.08e-09,41;UBERON:0006240,1.08e-09,41;UBERON:0001893,1.65e-09,34;UBERON:0000487,7.16e-09,22;UBERON:0002619,1.16e-08,22;UBERON:0001869,2.01e-08,32;UBERON:0002791,2.76e-08,32;UBERON:0000956,3.12e-08,25;UBERON:0000203,3.12e-08,25;UBERON:0003056,7.82e-08,61;UBERON:0003528,1.53e-07,34;UBERON:0002020,1.53e-07,34;UBERON:0006914,2.31e-07,25;UBERON:0000349,4.18e-07,5;UBERON:0001950,5.23e-07,20;UBERON:0003915,5.43e-07,9;UBERON:0004700,5.43e-07,9;UBERON:0001917,5.43e-07,9;UBERON:0000073,6.71e-07,53;UBERON:0002616,6.71e-07,53 | |||
|phase1_expression=3.08853244759946,3.42560838225573,1.69145284915165,2.00146596706261,1.34088328328186,1.74467704820074,0,0.631719873426831,0.522371256399677,0,0,0,0,3.21792517696121,5.63375538737457,0,0,0,0.487932798790507,0.492484232307152,0.816002764977012,0.626909442956176,0.85870796139317,1.09499540058307,0.87879847716362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0,0.411167888021826,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,2.89693037921647,1.5905718941022,3.40644409211845,0.567208902984407,1.55210578223795,0.527008714158756,0.523916301990851,0,0,0,0,0,0,0,0,0.993812036833525,2.58070378531837,0.347140501607594,6.21838736116411,2.09749718104953,1.37559020970034,1.8809546988313,1.03366703667732,1.77883131343355,0,2.01414658554573,0.760272105718513,1.22031028774085,2.20597848207521,2.43042584364528,0.803697554556718,1.12264686313085,0.900891843866578,3.06633274931766,1.89853131913626,1.83201743930407,0,0,0,2.48485975847659,0.506522046658319,0.926864265692532,0.860509862246441,1.06400514659507,0,0,2.22000793575444,1.24484414159907,1.21239604862719,0.490385709340376,0.151357427644931,1.15235184896,0,1.5608003841516,0.570471821544449,0.448346041655403,0,0.161872944368132,0.140450806702248,0.61246251376468,0.368502951935304,0.929932030581889,0,0.989067717114227,1.82032272387605,2.15585442544872,0.168336113954066,0.250237039743928,0.554128230968366,1.75591048352335,0.919463387397059,2.40380894250555,0.453728732640084,1.25572744982203,0.427114777637135,0.423863802319124,0.300091096084402,0.309157587715317,1.03056216018252,0.37223371266318,0.506328996723799,0.779496041289589,0.757301322732344,0.184099797284599,0,0,0.503760491138201,0.847802961552438,0.386521706326594,0.272746120590835,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0.464367928031979,0.721879481669586,0.236613600079688,0.505754070234305,0.241011029883482,0.220587945464788,0.217879444092406,0.237270619111097,0.404493924480493,0.196221465125346,0,4.42893272774789,1.40241773803446,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0.325808305310325,0,0,0,0.70445216541493,1.29929802984966,1.38895653772983,1.52203321787679,0,0,0,0,0,0,0,0.283550194484773,0,0,0.383382679165211,0,0,0,0,0,0.825472625798197,1.52795370223311,2.34434894420094,0,1.85089486865982,0.901029173531752,0.571652865261156,0.336393253036082,0,0.22001485746285,1.55126058909333,0,0,0.797814349754612,0,0.514414748524284,0,1.5985330740966,0.857867961948885,2.71310802695722,0,0,1.06617584622764,0.791951872933429,0.602878754119172,0,0.799783929456456,0,0,0,2.39624855491583,2.29723871668228,4.27910715122155,0.868687840005475,1.84928690295345,2.14873155887875,0,0,0,0,0.76228387266739,0,3.09315525111078,0.670065061337395,0,0,0,0,3.31267027641678,3.50119364741774,0.542530047399471,0,1.24900292158013,0.315404830067869,0.117141414992713,0.902838299183157,2.27407504055985,1.03473071292505,0,0.737476674166813,0.260650843404249,5.09083009403126,2.74514739048685,0,0,0,0,0,0,2.23297027036899,1.07423381301644,1.40330047216537,1.92208723883551,0.511707249066704,1.44768529029247,1.48418066444991,0,0.355123450626254,0.164254312027618,0.519254429183621,0.116210378459959,0,0.40101294060657,0,0,0,0,0.451199612907412,0.15403067420883,0,1.46139224653261,0.211103257785751,2.27466768141793,2.04112446331819,0.863663664408557,1.54227252690289,0,0.501689773854853,0,0,0.671624264166535,0,0,0.512900250232778,4.59220503979588,4.88067591996455,0,0.27470839445503,0.495056999523528,0.574265537996172,0,0,0.580024309752732,0.616194468458578,0,0.551346289938122,0.429680979473094,0.290033387828457,0.170453254832202,0,0,0,0.127612712494584,0,0.464845549297286,0,0,0,0.532306030317022,0,0.55597265731176,0.429374660225974,1.116475108079,1.58189712359363,0.762520775695299,0.511795582622668,0.42793898803392,0.318203247925937,0,0.539617372749944,0.823611089208164,0.353437207037059,1.61745985258653,0,0,0,0,0,0,0.424216295861138,0,0.551365343546124,0,0.438450885253763,0,0,0.608731130888112,1.239293992399,0.563391205064483,0,0.392996164052485,0.35667105148125,0.354761064070598,0.211107635297664,0.987884678879706,0,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,2.55722532125772,0,0,0,2.98244294329889,2.81338832821025,3.00533503561846,0,0,2.98871982376605,0.828851746593443,0,1.73856760253663,0,0.622079175323615,0.539210106883961,0,0,0.394573622547734,0,2.22273980289274,1.93866549219044,1.29875337426592,1.99613798001194,0,0,0,0.1137934482855,0,0,1.72371686620732,0,8.16037476186474,0,0.723578631752448,0,0.221158519862449,0.295547618953547,6.14279112031123,0,0,0.153900517007594,4.32979812218605,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.265372693510018,0,0,0,0,1.01101699471016,0,1.1713222286267,0,0,0.728341138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| ||
|short_description=p8@VGLL4 | |||
}} | }} |
Latest revision as of 18:18, 19 September 2015
Short description: | p8@VGLL4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_VGLL4_5end |
Coexpression cluster: | NA |
Association with transcript: | 117bp_to_ENST00000424529, NM_001128221, uc010hdv.1_5end |
EntrezGene: | VGLL4 |
HGNC: | 28966 |
UniProt: | Q0H0I7Q14135 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 7.22e-13 | 36 |
endothelial cell of vascular tree | 7.39e-13 | 24 |
meso-epithelial cell | 2.92e-11 | 45 |
blood vessel endothelial cell | 7.84e-10 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.84e-10 | 18 |
lining cell | 8.77e-10 | 58 |
barrier cell | 8.77e-10 | 58 |
endothelial cell of artery | 5.43e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
brain | 1.29e-11 | 68 |
future brain | 1.29e-11 | 68 |
central nervous system | 7.43e-11 | 81 |
nervous system | 3.20e-10 | 89 |
blood vessel endothelium | 7.84e-10 | 18 |
endothelium | 7.84e-10 | 18 |
cardiovascular system endothelium | 7.84e-10 | 18 |
regional part of forebrain | 1.08e-09 | 41 |
forebrain | 1.08e-09 | 41 |
anterior neural tube | 1.08e-09 | 41 |
future forebrain | 1.08e-09 | 41 |
telencephalon | 1.65e-09 | 34 |
simple squamous epithelium | 7.16e-09 | 22 |
regional part of cerebral cortex | 1.16e-08 | 22 |
cerebral hemisphere | 2.01e-08 | 32 |
regional part of telencephalon | 2.76e-08 | 32 |
cerebral cortex | 3.12e-08 | 25 |
pallium | 3.12e-08 | 25 |
pre-chordal neural plate | 7.82e-08 | 61 |
brain grey matter | 1.53e-07 | 34 |
gray matter | 1.53e-07 | 34 |
squamous epithelium | 2.31e-07 | 25 |
limbic system | 4.18e-07 | 5 |
neocortex | 5.23e-07 | 20 |
endothelial tube | 5.43e-07 | 9 |
arterial system endothelium | 5.43e-07 | 9 |
endothelium of artery | 5.43e-07 | 9 |
regional part of nervous system | 6.71e-07 | 53 |
regional part of brain | 6.71e-07 | 53 |