FFCP PHASE1:Hg19::chr3:113251358..113251423,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr3:113251358..113251423,+
|short_description=p1@SIDT1
|description=CAGE_peak_1_at_SIDT1_5end
|association_with_transcript=0bp_to_ENST00000491730_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54847 | |EntrezGene=54847 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25967 | |HGNC=25967 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000491730_5end | |||
|cluster_id=chr3:113251358..113251423,+ | |||
|coexpression_cluster_id=C57 | |||
|description=CAGE_peak_1_at_SIDT1_5end | |||
|id=chr3:113251358..113251423,+ | |||
|ontology_enrichment_celltype=CL:0000542!7.73e-30!53;CL:0000051!7.73e-30!53;CL:0000838!1.62e-29!52;CL:0000738!2.21e-23!140;CL:0002087!1.25e-20!119;CL:0002031!1.73e-18!124;CL:0000037!2.60e-16!172;CL:0000566!2.60e-16!172;CL:0000988!1.87e-14!182;CL:0000791!2.00e-14!18;CL:0000789!2.00e-14!18;CL:0002420!2.00e-14!18;CL:0002419!2.00e-14!18;CL:0000790!2.00e-14!18;CL:0000084!3.26e-14!25;CL:0000827!3.26e-14!25;CL:0000945!4.78e-14!24;CL:0000826!4.78e-14!24;CL:0002032!1.24e-13!165;CL:0000837!1.24e-13!165;CL:0000625!9.21e-10!11;CL:0000236!1.30e-09!14 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.36e-20;53!CL:0000791;8.75e-19;18!CL:0000789;8.75e-19;18!CL:0002419;8.75e-19;18!CL:0000084;7.77e-18;25!CL:0000945;2.48e-17;24!CL:0000625;1.51e-12;11!CL:0000236;1.28e-11;13!CL:0002087;7.79e-08;104!CL:0000624;2.30e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,6.09e-38,53;CL:0000051,6.09e-38,53;CL:0000838,1.66e-37,52;CL:0000791,8.27e-19,18;CL:0000789,8.27e-19,18;CL:0002420,8.27e-19,18;CL:0002419,8.27e-19,18;CL:0000790,8.27e-19,18;CL:0000738,2.60e-18,136;CL:0002087,3.53e-18,115;CL:0000084,5.78e-18,25;CL:0000827,5.78e-18,25;CL:0000945,2.49e-17,24;CL:0000826,2.49e-17,24;CL:0002031,2.77e-13,120;CL:0000625,1.48e-12,11;CL:0000236,2.35e-12,14;CL:0000037,5.68e-12,168;CL:0000988,2.95e-10,177;CL:0002032,2.84e-09,161;CL:0000837,2.84e-09,161;CL:0000624,2.29e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;1.36e-20;53!CL:0000790;8.75e-19;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.57e-36!115;UBERON:0001049!9.14e-17!57;UBERON:0005068!9.14e-17!57;UBERON:0006241!9.14e-17!57;UBERON:0007135!9.14e-17!57;UBERON:0003080!5.28e-14!42;UBERON:0002780!8.23e-14!41;UBERON:0001890!8.23e-14!41;UBERON:0006240!8.23e-14!41;UBERON:0002616!1.14e-12!59;UBERON:0001893!1.85e-11!34;UBERON:0002619!2.35e-11!22;UBERON:0002020!2.36e-11!34;UBERON:0003528!2.36e-11!34;UBERON:0002791!5.28e-11!33;UBERON:0001869!6.45e-11!32;UBERON:0001950!1.68e-10!20;UBERON:0003075!4.98e-10!86;UBERON:0007284!4.98e-10!86;UBERON:0000955!1.12e-09!69;UBERON:0006238!1.12e-09!69;UBERON:0001017!1.44e-09!82;UBERON:0000956!1.93e-09!25;UBERON:0000203!1.93e-09!25;UBERON:0002346!2.39e-09!90;UBERON:0005743!8.93e-09!86;UBERON:0003056!4.42e-08!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;1.05e-14;22!UBERON:0001950;1.52e-13;20!UBERON:0000956;4.07e-12;25!UBERON:0000203;4.07e-12;25!UBERON:0002780;5.85e-11;41!UBERON:0001890;5.85e-11;41!UBERON:0001893;6.99e-11;34!UBERON:0001869;7.54e-11;32!UBERON:0003528;7.97e-11;34!UBERON:0002020;7.97e-11;34!UBERON:0007023;1.77e-10;114!UBERON:0002791;2.31e-10;32!UBERON:0000073;2.61e-10;53!UBERON:0002616;2.61e-10;53!UBERON:0000178;4.42e-08;15!UBERON:0000179;4.42e-08;15!UBERON:0000463;4.42e-08;15!UBERON:0002390;5.65e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.30e-36,114;UBERON:0001049,2.31e-19,56;UBERON:0005068,2.31e-19,56;UBERON:0006241,2.31e-19,56;UBERON:0007135,2.31e-19,56;UBERON:0000073,6.95e-18,53;UBERON:0002616,6.95e-18,53;UBERON:0002780,6.25e-15,41;UBERON:0001890,6.25e-15,41;UBERON:0003080,6.25e-15,41;UBERON:0006240,6.25e-15,41;UBERON:0002619,1.09e-14,22;UBERON:0001950,1.51e-13,20;UBERON:0001893,1.38e-12,34;UBERON:0003528,1.86e-12,34;UBERON:0002020,1.86e-12,34;UBERON:0000955,2.78e-12,68;UBERON:0006238,2.78e-12,68;UBERON:0001017,3.84e-12,81;UBERON:0000956,4.20e-12,25;UBERON:0000203,4.20e-12,25;UBERON:0001869,7.30e-12,32;UBERON:0002791,1.55e-11,32;UBERON:0003075,6.66e-10,82;UBERON:0007284,6.66e-10,82;UBERON:0001016,1.52e-09,89;UBERON:0002346,7.57e-09,86;UBERON:0000178,4.44e-08,15;UBERON:0000179,4.44e-08,15;UBERON:0000463,4.44e-08,15;UBERON:0003056,2.38e-07,61;UBERON:0004177,3.45e-07,7;UBERON:0005057,3.45e-07,7;UBERON:0011216,4.82e-07,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0,0,0.136874425072884,0,23.3825021588731,20.9356503097362,22.1177295491439,14.9478425202584,47.2110159659572,12.0756576186539,0,0.90361775633475,0.739508020333575,0.387336002901508,5.82893853198428,4.40400659002271,12.7418943962332,9.42558903109666,13.6716848550987,2.23915474239924,8.42123531649347,3.09090681161024,0.145398238779565,0.755751887377619,0.485168122375632,0.929716147622738,1.23350366406548,0,0,0.512321413058201,0,0.344745680736619,1.29096936716765,0,0.188242339542605,0.272906150057846,0.224723484445085,1.53041946185451,1.60464513538047,0,0.329851300186716,0.199463657621632,0,0.870627715885752,2.26954089876456,0.622822248995575,0.502497330513487,0.521482918420201,0.217188844705117,1.81619850790011,2.94622108790052,0.316462387440884,0,0.212604299965044,0,0,0.450530678524519,0,0.285012743741249,0.19891667719909,0.182664153764634,19.3595868907455,23.4839602842717,22.2377313465889,29.444385357089,14.4142555332964,17.817325638589,16.5261218196216,27.6675588815256,27.891435486363,29.9490966579179,30.1995850218931,5.28685314316103,12.8916969485753,1.84368859342554,47.9971839077753,35.763979410174,23.438570885944,29.7591961795407,34.221837996527,44.5040937390649,27.2757419771076,22.2820913770347,19.7385958008141,29.242474085038,34.933698425687,19.0856066391256,18.4684273535027,22.5279929307036,23.766101529583,25.2128684589496,46.710267396049,48.6924307123278,26.1338809512442,18.3561135170057,36.4059468921825,34.7063719937456,41.4952294911985,35.9978918186229,31.9030892389645,28.5135613334512,32.9759510780322,35.5802779009283,34.9806034346568,33.8591470422944,30.3817358860787,56.6514948461498,39.0462685843921,45.1852140114333,0,0,0.12786256184353,0,0,0,0,0,0,0.443458794925128,0.175669571386252,3.01251873644739,0.364295288292542,0.370784442784429,0.324547393654683,0.522389211897802,0.664789802594326,5.48528435902286,16.0158575018436,13.3724700478643,0,0,0.347140501607594,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,1.41867352879343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0.738155454624648,0,0,0,0,0,2.36315962672562,8.82926198829301,0,0.171567810298526,0.219500570817251,0,0,0.833296006426766,0,0,0,0,0.234817388471643,0,0,0,18.1747011530633,12.8772924314231,0.492434012174795,0,0,0,0,0.141775097242386,0,0,0,0.492663237895943,0,0.621984346622316,0.144119953416961,0.75745460055828,0,0.381988425558278,0,0,0,0,0,0,0.87192013766656,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.95804522354044,64.6260893462321,42.6942598221844,46.0751500244297,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0.749007023947182,0,0.828831026872071,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,33.2896522057849,18.551421270401,24.3338831791853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0.200506470303285,0.460404944679482,0,0,0,0.902399225814824,0,0,0,0.105551628892876,0,0,0,0,0,0.501689773854853,0.254876273045038,0,0.223874754722178,0.219259876645935,0,0,0,0,1.13345112812495,0,0,0.574265537996172,1.30012049207304,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0,0,0.255679882248303,0,1.98341898433174,0.192190067365106,1.14851441245126,0.4046311234222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,1.54911749049875,0,0,0,0,0,0.422215270595328,0,0,0,1.25088746543166,4.02181365321472,0,2.2594512186427,1.72202149068492,0,3.54744122829341,1.1486170010348,16.2383234954294,15.2927441428475,13.6715324921799,25.4907999739834,21.8022004735683,13.6179395350471,15.1208802426672,14.2762531732969,0,0,0.980160863924127,4.27347302789153,6.49211458394002,6.11819852796361,1.91311527274587,0,0.191505370132367,0,0,0.280797178113459,0.228234679033192,0.156679895773023,0,0.169291777801603,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,0,6.36277837387947,0.879049075631364,0,2.67464122265948,0,0,0.296964680832639,0,6.95903353436409,7.03347082052564,0.445234820091624,4.77931235257603,0.211125408127993,4.38345574152353,25.6944041443967,0.755798243562828,0,44.4336147714461,0,0,0.179021174675609,0,5.03081368748361,26.3431401581634,0,8.72399471485697,8.53466503089032,0,16.1465211872845,18.7164399991859,1.44999915086959,1.82069517256799,1.5255219017566,0.709163045303809,0,0,0.173624994933292,2.65722415744152,0.361789315876224,16.7839909948792,15.8128341701651,13.5951904718632,10.0917282690827,0.10893846351899,0.278847488557207,3.07801034015188,0,0,0,0,0.31900115973192,0,0.533034776018635,0,2.19772358953035,0,0,0,0,0,0,0,0,0.141353071433941,0.216388639742091,7.96209544862804,7.43043541828049,12.2206028986725,0,0,0,5.59429403739619,1.60515529459758,2.57690890297873,1.64209310294099,0.978323094660449,0,6.70793484843964,9.67925728389311,3.0607276163049,3.1593289814244,0.450970258243478,0.207376382794494,0,0,0,0,0,0,0.173559738335131,0.195984794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| ||
|short_description=p1@SIDT1 | |||
}} | }} |
Latest revision as of 15:39, 19 September 2015
Short description: | p1@SIDT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SIDT1_5end |
Coexpression cluster: | C57_Neutrophils_Eosinophils_Whole_CD4_CD8_CD19_Natural |
Association with transcript: | 0bp_to_ENST00000491730_5end |
EntrezGene: | SIDT1 |
HGNC: | 25967 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 6.09e-38 | 53 |
common lymphoid progenitor | 6.09e-38 | 53 |
lymphoid lineage restricted progenitor cell | 1.66e-37 | 52 |
mature alpha-beta T cell | 8.27e-19 | 18 |
alpha-beta T cell | 8.27e-19 | 18 |
immature T cell | 8.27e-19 | 18 |
mature T cell | 8.27e-19 | 18 |
immature alpha-beta T cell | 8.27e-19 | 18 |
leukocyte | 2.60e-18 | 136 |
nongranular leukocyte | 3.53e-18 | 115 |
T cell | 5.78e-18 | 25 |
pro-T cell | 5.78e-18 | 25 |
lymphocyte of B lineage | 2.49e-17 | 24 |
pro-B cell | 2.49e-17 | 24 |
hematopoietic lineage restricted progenitor cell | 2.77e-13 | 120 |
CD8-positive, alpha-beta T cell | 1.48e-12 | 11 |
B cell | 2.35e-12 | 14 |
hematopoietic stem cell | 5.68e-12 | 168 |
hematopoietic cell | 2.95e-10 | 177 |
hematopoietic oligopotent progenitor cell | 2.84e-09 | 161 |
hematopoietic multipotent progenitor cell | 2.84e-09 | 161 |
CD4-positive, alpha-beta T cell | 2.29e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 7.30e-36 | 114 |
neural tube | 2.31e-19 | 56 |
neural rod | 2.31e-19 | 56 |
future spinal cord | 2.31e-19 | 56 |
neural keel | 2.31e-19 | 56 |
regional part of nervous system | 6.95e-18 | 53 |
regional part of brain | 6.95e-18 | 53 |
regional part of forebrain | 6.25e-15 | 41 |
forebrain | 6.25e-15 | 41 |
anterior neural tube | 6.25e-15 | 41 |
future forebrain | 6.25e-15 | 41 |
regional part of cerebral cortex | 1.09e-14 | 22 |
neocortex | 1.51e-13 | 20 |
telencephalon | 1.38e-12 | 34 |
brain grey matter | 1.86e-12 | 34 |
gray matter | 1.86e-12 | 34 |
brain | 2.78e-12 | 68 |
future brain | 2.78e-12 | 68 |
central nervous system | 3.84e-12 | 81 |
cerebral cortex | 4.20e-12 | 25 |
pallium | 4.20e-12 | 25 |
cerebral hemisphere | 7.30e-12 | 32 |
regional part of telencephalon | 1.55e-11 | 32 |
neural plate | 6.66e-10 | 82 |
presumptive neural plate | 6.66e-10 | 82 |
nervous system | 1.52e-09 | 89 |
neurectoderm | 7.57e-09 | 86 |
blood | 4.44e-08 | 15 |
haemolymphatic fluid | 4.44e-08 | 15 |
organism substance | 4.44e-08 | 15 |
pre-chordal neural plate | 2.38e-07 | 61 |
hemopoietic organ | 3.45e-07 | 7 |
immune organ | 3.45e-07 | 7 |
organ system subdivision | 4.82e-07 | 223 |