FFCP PHASE1:Hg19::chr3:101039452..101039463,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr3:101039452..101039463,-
|short_description=p2@IMPG2
|description=CAGE_peak_2_at_IMPG2_5end
|association_with_transcript=-33bp_to_NM_016247,uc003duq.1_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50939 | |EntrezGene=50939 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18362 | |HGNC=18362 | ||
|TSSclassifier=strong | |||
|UniProt=F1T0J3,Q9BZV3 | |UniProt=F1T0J3,Q9BZV3 | ||
|association_with_transcript=-33bp_to_NM_016247,uc003duq.1_5end | |||
|cluster_id=chr3:101039452..101039463,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_2_at_IMPG2_5end | |||
|id=chr3:101039452..101039463,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000243;1.21e-07;15!CL:0000125;1.21e-07;15!CL:0000095;6.19e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,1.21e-07,15;CL:0000125,1.21e-07,15;CL:0000030,1.21e-07,15;CL:0000339,1.21e-07,15;CL:0000095,6.19e-07,17;CL:0000123,6.19e-07,17 | |||
|ontology_enrichment_development_v019=UBERON:0003056;3.19e-38;3!UBERON:0006238;2.68e-11;10!CL:0000339;1.21e-07;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;1.94e-10;11!DOID:5409;2.61e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,1.94e-10,11;DOID:5409,2.61e-08,4 | |||
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|ontology_enrichment_uberon_v019=UBERON:0001905;2.02e-57;2!UBERON:0002757;2.02e-57;2!UBERON:0010134;2.02e-57;2!UBERON:0005408;2.02e-57;2!UBERON:0001899;2.02e-57;2!UBERON:0003296;2.37e-29;4!UBERON:0010133;2.37e-29;4!UBERON:0002784;2.37e-29;4!UBERON:0000966;2.02e-23;5!UBERON:0005388;2.02e-23;5!UBERON:0001802;2.02e-23;5!UBERON:0001894;2.90e-17;7!UBERON:0000970;2.01e-13;20!UBERON:0002104;8.05e-13;21!UBERON:0000020;9.05e-12;23!UBERON:0001032;2.61e-11;24!UBERON:0004456;2.61e-11;24!UBERON:0000019;6.77e-07;19!UBERON:0000047;6.77e-07;19!UBERON:0004088;6.77e-07;19!UBERON:0010230;6.77e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,2.02e-57,2;UBERON:0002757,2.02e-57,2;UBERON:0010134,2.02e-57,2;UBERON:0005408,2.02e-57,2;UBERON:0001899,2.02e-57,2;UBERON:0003296,2.37e-29,4;UBERON:0010133,2.37e-29,4;UBERON:0002784,2.37e-29,4;UBERON:0000966,1.04e-19,6;UBERON:0005388,1.04e-19,6;UBERON:0001802,1.04e-19,6;UBERON:0001894,2.90e-17,7;UBERON:0006222,2.90e-17,7;UBERON:0000970,8.05e-13,21;UBERON:0002104,8.05e-13,21;UBERON:0000020,2.61e-11,24;UBERON:0001032,2.61e-11,24;UBERON:0004456,2.61e-11,24;UBERON:0003056,8.61e-08,61;UBERON:0000955,5.75e-07,68;UBERON:0006238,5.75e-07,68 | |||
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|short_description=p2@IMPG2 | |||
}} | }} |
Latest revision as of 06:32, 19 September 2015
Short description: | p2@IMPG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IMPG2_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | -33bp_to_NM_016247, uc003duq.1_5end |
EntrezGene: | IMPG2 |
HGNC: | 18362 |
UniProt: | F1T0J3Q9BZV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 1.21e-07 | 15 |
glial cell | 1.21e-07 | 15 |
glioblast | 1.21e-07 | 15 |
glioblast (sensu Vertebrata) | 1.21e-07 | 15 |
neuron associated cell | 6.19e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 6.19e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
pineal body | 2.02e-57 | 2 |
regional part of epithalamus | 2.02e-57 | 2 |
secretory circumventricular organ | 2.02e-57 | 2 |
circumventricular organ | 2.02e-57 | 2 |
epithalamus | 2.02e-57 | 2 |
gland of diencephalon | 2.37e-29 | 4 |
neuroendocrine gland | 2.37e-29 | 4 |
regional part of diencephalon | 2.37e-29 | 4 |
retina | 1.04e-19 | 6 |
photoreceptor array | 1.04e-19 | 6 |
posterior segment of eyeball | 1.04e-19 | 6 |
diencephalon | 2.90e-17 | 7 |
future diencephalon | 2.90e-17 | 7 |
eye | 8.05e-13 | 21 |
visual system | 8.05e-13 | 21 |
sense organ | 2.61e-11 | 24 |
sensory system | 2.61e-11 | 24 |
entire sense organ system | 2.61e-11 | 24 |
pre-chordal neural plate | 8.61e-08 | 61 |
brain | 5.75e-07 | 68 |
future brain | 5.75e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 1.94e-10 | 11 |
lung small cell carcinoma | 2.61e-08 | 4 |