FFCP PHASE1:Hg19::chr2:238499317..238499331,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:238499317..238499331,-
|short_description=p3@RAB17
|description=CAGE_peak_3_at_RAB17_5end
|association_with_transcript=-14bp_to_ENST00000409576_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64284 | |EntrezGene=64284 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16523 | |HGNC=16523 | ||
|TSSclassifier=strong | |||
|UniProt=B8ZZM5 | |UniProt=B8ZZM5 | ||
|association_with_transcript=-14bp_to_ENST00000409576_5end | |||
|cluster_id=chr2:238499317..238499331,- | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_3_at_RAB17_5end | |||
|id=chr2:238499317..238499331,- | |||
|ontology_enrichment_celltype=CL:0000066!3.88e-13!254;CL:0000039!1.69e-08!7;CL:0000586!1.69e-08!7;CL:0000223!1.05e-07!59;CL:0000181!2.05e-07!12;CL:0000417!2.05e-07!12;CL:0000668!2.05e-07!12;CL:0000414!2.05e-07!12;CL:0000412!2.05e-07!12;CL:0000182!2.05e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.02e-16;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,9.27e-17,12;CL:0000223,3.85e-09,58 | |||
|ontology_enrichment_development_v019=UBERON:0009497;6.85e-15;13!UBERON:0004161;2.24e-13;11!UBERON:0003104;9.36e-12;31!UBERON:0001041;1.81e-09;30 | |||
|ontology_enrichment_disease=DOID:305!5.92e-25!106;DOID:0050687!5.33e-23!143;DOID:299!1.36e-11!25;DOID:162!2.24e-11!235;DOID:14566!8.24e-11!239 | |||
|ontology_enrichment_disease_v019=DOID:3493;7.63e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,3.25e-09,143;DOID:305,4.95e-09,106;DOID:3493,9.71e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.07e-19!129;UBERON:0004185!1.07e-19!129;UBERON:0001007!3.25e-19!155;UBERON:0001555!3.25e-19!155;UBERON:0007026!3.25e-19!155;UBERON:0004119!3.26e-17!169;UBERON:0000925!3.26e-17!169;UBERON:0006595!3.26e-17!169;UBERON:0000077!4.52e-15!130;UBERON:0001041!7.63e-15!98;UBERON:0005911!4.90e-12!82;UBERON:0009497!3.71e-11!25;UBERON:0000015!3.71e-11!25;UBERON:0002423!3.71e-11!25;UBERON:0006235!3.71e-11!25;UBERON:0004161!3.71e-11!25;UBERON:0000466!4.48e-10!126;UBERON:0008835!9.64e-10!22;UBERON:0003894!9.64e-10!22;UBERON:0003929!1.00e-09!54;UBERON:0007499!1.45e-09!25;UBERON:0009854!3.53e-09!23;UBERON:0009856!4.60e-09!26;UBERON:0001048!9.37e-09!168;UBERON:0003135!1.38e-08!11;UBERON:0005177!3.09e-08!107;UBERON:0005409!9.83e-08!35;UBERON:0008947!9.98e-08!38;UBERON:0003258!9.98e-08!38;UBERON:0000949!3.12e-07!45;UBERON:0002107!5.65e-07!19;UBERON:0006925!5.65e-07!19;UBERON:0008836!5.65e-07!19;UBERON:0000160!7.41e-07!27;UBERON:0009569!7.76e-07!113;UBERON:0002368!8.01e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;8.32e-17;19!UBERON:0006925;8.32e-17;19!UBERON:0002423;4.15e-15;25!UBERON:0000160;1.68e-13;17!UBERON:0005409;7.02e-13;22!UBERON:0002365;1.16e-11;31!UBERON:0002330;1.16e-11;31!UBERON:0002108;2.27e-08;4!UBERON:0002368;3.08e-08;33!UBERON:0000949;3.20e-08;43!UBERON:0004921;3.24e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008835,1.99e-17,22;UBERON:0003894,1.99e-17,22;UBERON:0002107,7.73e-17,19;UBERON:0006925,7.73e-17,19;UBERON:0008836,7.73e-17,19;UBERON:0009854,1.40e-16,23;UBERON:0007499,4.32e-15,25;UBERON:0009497,4.32e-15,25;UBERON:0000015,4.32e-15,25;UBERON:0002423,4.32e-15,25;UBERON:0006235,4.32e-15,25;UBERON:0004161,4.32e-15,25;UBERON:0009856,1.97e-14,26;UBERON:0000160,1.40e-13,17;UBERON:0002365,6.21e-12,31;UBERON:0002330,6.21e-12,31;UBERON:0004921,1.81e-11,118;UBERON:0005409,3.08e-11,25;UBERON:0003929,2.88e-10,54;UBERON:0000949,3.29e-09,45;UBERON:0005172,8.61e-09,54;UBERON:0005173,8.61e-09,54;UBERON:0001007,2.04e-08,145;UBERON:0001555,2.04e-08,145;UBERON:0007026,2.04e-08,145;UBERON:0002368,2.32e-08,35;UBERON:0002108,2.42e-08,4;UBERON:0005911,6.26e-08,82;UBERON:0002417,1.16e-07,60;UBERON:0000916,1.16e-07,60;UBERON:0004119,3.52e-07,160;UBERON:0000925,3.52e-07,160;UBERON:0006595,3.52e-07,160;UBERON:0005177,6.96e-07,101 | |||
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| ||
|short_description=p3@RAB17 | |||
}} | }} |
Latest revision as of 04:09, 16 September 2015
Short description: | p3@RAB17 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RAB17_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | -14bp_to_ENST00000409576_5end |
EntrezGene: | RAB17 |
HGNC: | 16523 |
UniProt: | B8ZZM5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 9.27e-17 | 12 |
endodermal cell | 3.85e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
hepatic diverticulum | 1.99e-17 | 22 |
liver primordium | 1.99e-17 | 22 |
liver | 7.73e-17 | 19 |
digestive gland | 7.73e-17 | 19 |
liver bud | 7.73e-17 | 19 |
digestive tract diverticulum | 1.40e-16 | 23 |
epithelial sac | 4.32e-15 | 25 |
epithelium of foregut-midgut junction | 4.32e-15 | 25 |
anatomical boundary | 4.32e-15 | 25 |
hepatobiliary system | 4.32e-15 | 25 |
foregut-midgut junction | 4.32e-15 | 25 |
septum transversum | 4.32e-15 | 25 |
sac | 1.97e-14 | 26 |
intestine | 1.40e-13 | 17 |
exocrine gland | 6.21e-12 | 31 |
exocrine system | 6.21e-12 | 31 |
subdivision of digestive tract | 1.81e-11 | 118 |
gastrointestinal system | 3.08e-11 | 25 |
gut epithelium | 2.88e-10 | 54 |
endocrine system | 3.29e-09 | 45 |
abdomen element | 8.61e-09 | 54 |
abdominal segment element | 8.61e-09 | 54 |
digestive system | 2.04e-08 | 145 |
digestive tract | 2.04e-08 | 145 |
primitive gut | 2.04e-08 | 145 |
endocrine gland | 2.32e-08 | 35 |
small intestine | 2.42e-08 | 4 |
endo-epithelium | 6.26e-08 | 82 |
abdominal segment of trunk | 1.16e-07 | 60 |
abdomen | 1.16e-07 | 60 |
endoderm-derived structure | 3.52e-07 | 160 |
endoderm | 3.52e-07 | 160 |
presumptive endoderm | 3.52e-07 | 160 |
trunk region element | 6.96e-07 | 101 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 3.25e-09 | 143 |
carcinoma | 4.95e-09 | 106 |
signet ring cell adenocarcinoma | 9.71e-09 | 2 |