FFCP PHASE1:Mm9::chr4:83114536..83114556,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1321 | |MCL_coexpression_id=1321 | ||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:83114536..83114556,- | |||
|description=CAGE_peak_at_chr4:83114536..83114556,- | |description=CAGE_peak_at_chr4:83114536..83114556,- | ||
|id=chr4:83114536..83114556,- | |id=chr4:83114536..83114556,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.13e-09!71;UBERON:0003075!1.13e-09!71;UBERON:0007284!1.13e-09!71;UBERON:0001017!3.19e-09!73;UBERON:0005743!3.19e-09!73;UBERON:0002020!8.83e-09!34;UBERON:0001049!9.73e-09!52;UBERON:0005068!9.73e-09!52;UBERON:0006241!9.73e-09!52;UBERON:0007135!9.73e-09!52;UBERON:0003056!1.34e-08!49;UBERON:0000955!1.42e-08!50;UBERON:0006238!1.42e-08!50;UBERON:0000073!1.93e-08!75;UBERON:0001016!1.93e-08!75;UBERON:0002616!2.54e-08!49;UBERON:0000033!1.21e-07!63;UBERON:0003080!1.53e-07!40;UBERON:0000153!2.00e-07!94;UBERON:0002791!2.03e-07!29;UBERON:0003528!2.03e-07!29;UBERON:0001893!2.03e-07!29;UBERON:0007811!2.73e-07!86;UBERON:0002780!3.24e-07!39;UBERON:0001890!3.24e-07!39;UBERON:0006240!3.24e-07!39;UBERON:0002021!6.18e-07!10;UBERON:0000411!6.18e-07!10;UBERON:0001950!6.18e-07!10;UBERON:0000956!7.59e-07!21;UBERON:0001869!7.59e-07!21;UBERON:0000203!7.59e-07!21 | |ontology_enrichment_uberon=UBERON:0002346!1.13e-09!71;UBERON:0003075!1.13e-09!71;UBERON:0007284!1.13e-09!71;UBERON:0001017!3.19e-09!73;UBERON:0005743!3.19e-09!73;UBERON:0002020!8.83e-09!34;UBERON:0001049!9.73e-09!52;UBERON:0005068!9.73e-09!52;UBERON:0006241!9.73e-09!52;UBERON:0007135!9.73e-09!52;UBERON:0003056!1.34e-08!49;UBERON:0000955!1.42e-08!50;UBERON:0006238!1.42e-08!50;UBERON:0000073!1.93e-08!75;UBERON:0001016!1.93e-08!75;UBERON:0002616!2.54e-08!49;UBERON:0000033!1.21e-07!63;UBERON:0003080!1.53e-07!40;UBERON:0000153!2.00e-07!94;UBERON:0002791!2.03e-07!29;UBERON:0003528!2.03e-07!29;UBERON:0001893!2.03e-07!29;UBERON:0007811!2.73e-07!86;UBERON:0002780!3.24e-07!39;UBERON:0001890!3.24e-07!39;UBERON:0006240!3.24e-07!39;UBERON:0002021!6.18e-07!10;UBERON:0000411!6.18e-07!10;UBERON:0001950!6.18e-07!10;UBERON:0000956!7.59e-07!21;UBERON:0001869!7.59e-07!21;UBERON:0000203!7.59e-07!21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.77e-10,64;UBERON:0003075,2.77e-10,64;UBERON:0007284,2.77e-10,64;UBERON:0002021,3.97e-10,10;UBERON:0000411,3.97e-10,10;UBERON:0001950,3.97e-10,10;UBERON:0001017,5.94e-10,73;UBERON:0000073,1.23e-09,54;UBERON:0001016,2.25e-09,75;UBERON:0010314,1.47e-08,92;UBERON:0001049,2.18e-08,52;UBERON:0005068,2.18e-08,52;UBERON:0006241,2.18e-08,52;UBERON:0007135,2.18e-08,52;UBERON:0003056,2.29e-08,49;UBERON:0004121,3.23e-08,95;UBERON:0000924,3.23e-08,95;UBERON:0006601,3.23e-08,95;UBERON:0002020,5.70e-08,34;UBERON:0010371,1.06e-07,73;UBERON:0003080,6.49e-07,40 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0.233612640595526,0.387369970324729,0.422366166455,0,0,0.239316476986009,0.171200729931206,0.437102012094987,0.333109761815663,0.607425802169478,0,0.157731082679119,0.411343300817216,0,1.02051948181284,0.198581902401771,0.522399578277871,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0,0.61506478758457,0,0,0,0.204169356262369,0,0,0,0,0.683045484958446,0,0.125896817975577,0.202753862439029,0.183546752161682,0,0.218025156380447,0,0.388859798148567,0,1.43752564364972,0.838913030288682,0,0,0.257259436035947,0.286533439938757,0.515672092277442,0.809265843438391,1.05798195854407,1.90149421051854,0,0,0,0,0,0,0.384218305321555,1.97010263386108,0.945041568321835,1.26194976810829,1.14260393761521,0.441737081903227,0.61245399607477,0.958454710182364,0.919218786610021,2.20231761998777,2.29837208553338,2.30409799884365,0.791317726381163,0.914876436024097,0,0.837548997004143,0.56276261003168,1.37518422999129,3.83017161115768,4.55589378557129,1.3047961207771,0.227178579999552,0,0,0,0,0,0,0,0.140444420131752,0.681721290312231,0,0,0,0,0,0,0.432982082022428,0.253359865475099,0.505524445014783,0.22836775943812,0.517875767294343,0.148442139064825,0.867426633830679,0.304465478312141,0.461230994512117,1.3565037649736,0.587943535678524,0.502666365318702,0.247194967734374,0,0.884610551949874,0.323533699894818,0.883366073841574,0.969750506270444,0,0.878342391034642,1.67557365450764,0.255457055208591,0.359445373517761,0,0.254140454146129,1.64769703345305,3.20250421973039,3.5183218591602,1.04294592115366,2.30143911597297,1.66230435647648,1.62241263067758,1.83310854930569,0.248813941220186,0,0.210441855886474,2.86264974517948,0,0.720248519221397,4.06903008156431,3.74200745332303,2.8185018462667,1.03071897015702,0.517406741478031,0.862271971731369,1.89106080167819,0.879755620819744,0,2.50242524303038,0.696504333044333,0,0.59710280045548,0,0,0.568326998791185,0.828503090142008,2.81431271977315,1.80062061461015,0.710234206755631,1.96764231747404,2.46827380619805,2.55787339225449,0.536546802799238,1.5179494507732,0.493679549740441,1.31333971263276,0.162137619091711,0.146199987425332,0.219550115291051,0.134206418760372,0.841159794256509,4.52780294468852,0,0.264450566663544,2.98603550749328,3.48355007790658,0.38660238396628,0.201683524623343,0.22237804384487,0.380451252225118,0,0.658795818896044,0.251335208800269,0.198956472041151,0.58489226135736,0.898819408654221,0.864552199498777,0.398282546508734,0.379335801906163,1.82797620175566,0,2.44381593414377,0.775809948670503,2.17421041659988,0.442655759869801,0.885660887877613,1.56998727841375,0,0.592905254174298,0.333690211432188,0.786235980452812,1.34917267430912,1.21716072833102,0.241177159752417,0.50925170356284,0.863088412352432,1.78348749452539,2.19649130550465,24.4405951096503,0.372140947668503,0.936113019343682,0.505157755894224,0.538192240565737,0.482443521363367,0,0.37898282354097,0.814824882210129,0.678980343100753,2.11221223459652,0.670025029767263,0.714130922658041,0.780534591431195,0.315270288212382,1.55025282754142,0.478364305972461,1.14704320301017,0.518054945597687,0.144649058581512,0,0,0,0.275936746304732,0.481651769963376,1.05490517932983,1.96721934452011,0,0.315508219416257,1.17131623288992,1.29254038639679,0.477937595905104,1.33679204449436,0,1.61924280669958,0.876767573733936,0,1.28528526568723,0.141940085208269,0.890328018336276,1.14020871547503,0.494910368917606,0,0.971122544619926,0,0.754420319023592,0,0.307435147943927,0,0.363533729477506,1.42598951353889,0.316036757935816,0,0,0,1.08036656418786,0.258717367565509,0.643011105094777,1.06404140185364,2.14042581122485,0.329098041204242,0.304464949114599,0.469343416127421,0,0,0.16488625294148,0.484393280087717,0.301564624640779,0.119372344003136,0.328281799490123,0.874442509889552,1.66882771809459,0.341741761595705,0.206386867963223,0.740778109478847,2.63715839806567,2.32380187125743,1.14389086603261,0.169978429993855,0.279902904647316,0.276399947608848,0,0.316335993581135,0.203319467126849,1.18805874903981,1.04544148007234,0.436725127492355,1.75323650300267,0.165306911450672,0.26175594198403,0.259229946583586,0,6.20062232552609,0.747582730219894,0.165458490457098,0.388902376688095,0.645799117388655,1.68956125490778,2.58185925020659,1.8228613878153,0.734015410979976,15.2197996120384,6.62469014393091,0,0.810900861160657,1.33524244314275,1.68897069871134,0.895133478337407,1.39076948346885,1.20195449519969,1.32920574457119,1.61546319917036,0.838274873204998,1.51239277705261,2.63136277997332,1.44317762460494,1.5193997283604,0,1.10992976687032,0.807424709485281,1.00730769818447,0.19318959403219,0,0.183151624267265,0,0.501572104035363,2.82375921308533,3.68260189205742,4.01026859407578,1.71853182343688,2.05524755931193,5.2877572817279,2.02506750069542,4.95353323546643,1.81256963593682,3.62432218226274,2.69847103718859,0.399024873401031,0.341467211508268,0.486213434136588,0.628839487883947,0,1.77797382241292,0.412070114477788,0.320919209591815,0.252697211763798,0.760437899670719,0.754505365544305,0.187283014939765,0.640251524048693,0.574354689556133,0.952587382566147,0.463537303779422,0.964546102318525,0,0.735994600671987,1.37147700954166,1.24233064311536,0.953744759789284,0.436039249896986,0.564656282491984,0.169229215783353,0.73171189149109,2.36762740294059,0.679020569229309,0,0.949080144993393,0.788035859004508,1.22769312950907,0.154936841185966,0.192906610981141,0.499621155875892,0.467863216890817,0,0,0,0.231867835620421 | |phase1_expression=0.160148847104794,0,0,0,0,0,0.233612640595526,0.387369970324729,0.422366166455,0,0,0.239316476986009,0.171200729931206,0.437102012094987,0.333109761815663,0.607425802169478,0,0.157731082679119,0.411343300817216,0,1.02051948181284,0.198581902401771,0.522399578277871,0.159992422793407,0,0,0,0,0,0,0.221730510655305,0,0.61506478758457,0,0,0,0.204169356262369,0,0,0,0,0.683045484958446,0,0.125896817975577,0.202753862439029,0.183546752161682,0,0.218025156380447,0,0.388859798148567,0,1.43752564364972,0.838913030288682,0,0,0.257259436035947,0.286533439938757,0.515672092277442,0.809265843438391,1.05798195854407,1.90149421051854,0,0,0,0,0,0,0.384218305321555,1.97010263386108,0.945041568321835,1.26194976810829,1.14260393761521,0.441737081903227,0.61245399607477,0.958454710182364,0.919218786610021,2.20231761998777,2.29837208553338,2.30409799884365,0.791317726381163,0.914876436024097,0,0.837548997004143,0.56276261003168,1.37518422999129,3.83017161115768,4.55589378557129,1.3047961207771,0.227178579999552,0,0,0,0,0,0,0,0.140444420131752,0.681721290312231,0,0,0,0,0,0,0.432982082022428,0.253359865475099,0.505524445014783,0.22836775943812,0.517875767294343,0.148442139064825,0.867426633830679,0.304465478312141,0.461230994512117,1.3565037649736,0.587943535678524,0.502666365318702,0.247194967734374,0,0.884610551949874,0.323533699894818,0.883366073841574,0.969750506270444,0,0.878342391034642,1.67557365450764,0.255457055208591,0.359445373517761,0,0.254140454146129,1.64769703345305,3.20250421973039,3.5183218591602,1.04294592115366,2.30143911597297,1.66230435647648,1.62241263067758,1.83310854930569,0.248813941220186,0,0.210441855886474,2.86264974517948,0,0.720248519221397,4.06903008156431,3.74200745332303,2.8185018462667,1.03071897015702,0.517406741478031,0.862271971731369,1.89106080167819,0.879755620819744,0,2.50242524303038,0.696504333044333,0,0.59710280045548,0,0,0.568326998791185,0.828503090142008,2.81431271977315,1.80062061461015,0.710234206755631,1.96764231747404,2.46827380619805,2.55787339225449,0.536546802799238,1.5179494507732,0.493679549740441,1.31333971263276,0.162137619091711,0.146199987425332,0.219550115291051,0.134206418760372,0.841159794256509,4.52780294468852,0,0.264450566663544,2.98603550749328,3.48355007790658,0.38660238396628,0.201683524623343,0.22237804384487,0.380451252225118,0,0.658795818896044,0.251335208800269,0.198956472041151,0.58489226135736,0.898819408654221,0.864552199498777,0.398282546508734,0.379335801906163,1.82797620175566,0,2.44381593414377,0.775809948670503,2.17421041659988,0.442655759869801,0.885660887877613,1.56998727841375,0,0.592905254174298,0.333690211432188,0.786235980452812,1.34917267430912,1.21716072833102,0.241177159752417,0.50925170356284,0.863088412352432,1.78348749452539,2.19649130550465,24.4405951096503,0.372140947668503,0.936113019343682,0.505157755894224,0.538192240565737,0.482443521363367,0,0.37898282354097,0.814824882210129,0.678980343100753,2.11221223459652,0.670025029767263,0.714130922658041,0.780534591431195,0.315270288212382,1.55025282754142,0.478364305972461,1.14704320301017,0.518054945597687,0.144649058581512,0,0,0,0.275936746304732,0.481651769963376,1.05490517932983,1.96721934452011,0,0.315508219416257,1.17131623288992,1.29254038639679,0.477937595905104,1.33679204449436,0,1.61924280669958,0.876767573733936,0,1.28528526568723,0.141940085208269,0.890328018336276,1.14020871547503,0.494910368917606,0,0.971122544619926,0,0.754420319023592,0,0.307435147943927,0,0.363533729477506,1.42598951353889,0.316036757935816,0,0,0,1.08036656418786,0.258717367565509,0.643011105094777,1.06404140185364,2.14042581122485,0.329098041204242,0.304464949114599,0.469343416127421,0,0,0.16488625294148,0.484393280087717,0.301564624640779,0.119372344003136,0.328281799490123,0.874442509889552,1.66882771809459,0.341741761595705,0.206386867963223,0.740778109478847,2.63715839806567,2.32380187125743,1.14389086603261,0.169978429993855,0.279902904647316,0.276399947608848,0,0.316335993581135,0.203319467126849,1.18805874903981,1.04544148007234,0.436725127492355,1.75323650300267,0.165306911450672,0.26175594198403,0.259229946583586,0,6.20062232552609,0.747582730219894,0.165458490457098,0.388902376688095,0.645799117388655,1.68956125490778,2.58185925020659,1.8228613878153,0.734015410979976,15.2197996120384,6.62469014393091,0,0.810900861160657,1.33524244314275,1.68897069871134,0.895133478337407,1.39076948346885,1.20195449519969,1.32920574457119,1.61546319917036,0.838274873204998,1.51239277705261,2.63136277997332,1.44317762460494,1.5193997283604,0,1.10992976687032,0.807424709485281,1.00730769818447,0.19318959403219,0,0.183151624267265,0,0.501572104035363,2.82375921308533,3.68260189205742,4.01026859407578,1.71853182343688,2.05524755931193,5.2877572817279,2.02506750069542,4.95353323546643,1.81256963593682,3.62432218226274,2.69847103718859,0.399024873401031,0.341467211508268,0.486213434136588,0.628839487883947,0,1.77797382241292,0.412070114477788,0.320919209591815,0.252697211763798,0.760437899670719,0.754505365544305,0.187283014939765,0.640251524048693,0.574354689556133,0.952587382566147,0.463537303779422,0.964546102318525,0,0.735994600671987,1.37147700954166,1.24233064311536,0.953744759789284,0.436039249896986,0.564656282491984,0.169229215783353,0.73171189149109,2.36762740294059,0.679020569229309,0,0.949080144993393,0.788035859004508,1.22769312950907,0.154936841185966,0.192906610981141,0.499621155875892,0.467863216890817,0,0,0,0.231867835620421 | ||
|short_description=p@chr4:83114536..83114556,- | |short_description=p@chr4:83114536..83114556,- | ||
}} | }} |
Latest revision as of 18:36, 5 August 2015
Short description: | p@chr4:83114536..83114556, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:83114536..83114556, - |
Coexpression cluster: | MCL_coexpression_mm9:1321 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.77e-10 | 64 |
neural plate | 2.77e-10 | 64 |
presumptive neural plate | 2.77e-10 | 64 |
occipital lobe | 3.97e-10 | 10 |
visual cortex | 3.97e-10 | 10 |
neocortex | 3.97e-10 | 10 |
central nervous system | 5.94e-10 | 73 |
regional part of nervous system | 1.23e-09 | 54 |
nervous system | 2.25e-09 | 75 |
structure with developmental contribution from neural crest | 1.47e-08 | 92 |
neural tube | 2.18e-08 | 52 |
neural rod | 2.18e-08 | 52 |
future spinal cord | 2.18e-08 | 52 |
neural keel | 2.18e-08 | 52 |
pre-chordal neural plate | 2.29e-08 | 49 |
ectoderm-derived structure | 3.23e-08 | 95 |
ectoderm | 3.23e-08 | 95 |
presumptive ectoderm | 3.23e-08 | 95 |
gray matter | 5.70e-08 | 34 |
ecto-epithelium | 1.06e-07 | 73 |
anterior neural tube | 6.49e-07 | 40 |