FFCP PHASE1:Hg19::chr2:211543284..211543294,+: Difference between revisions
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|id=chr2:211543284..211543294,+
|short_description=p@chr2:211543284..211543294,+
|description=CAGE_peak_at_chr2:211543284..211543294,+
|association_with_transcript=...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:211543284..211543294,+ | |||
|coexpression_cluster_id=C768 | |||
|description=CAGE_peak_at_chr2:211543284..211543294,+ | |||
|id=chr2:211543284..211543294,+ | |||
|ontology_enrichment_celltype=CL:0002150!3.82e-13!3;CL:0000861!3.82e-13!3 | |||
|ontology_enrichment_celltype_v019=CL:0002561;4.29e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002561,3.93e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.66e-25;29 | |||
|ontology_enrichment_disease=DOID:305!1.54e-10!106;DOID:0050687!2.31e-10!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,7.75e-10,106;DOID:0050687,6.00e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.74e-37!9;UBERON:0001557!8.06e-17!19;UBERON:0008947!2.56e-13!38;UBERON:0003258!2.56e-13!38;UBERON:0004921!3.93e-11!129;UBERON:0004185!3.93e-11!129;UBERON:0001041!9.29e-11!98;UBERON:0000072!1.52e-10!46;UBERON:0001007!2.58e-10!155;UBERON:0001555!2.58e-10!155;UBERON:0007026!2.58e-10!155;UBERON:0004119!5.45e-09!169;UBERON:0000925!5.45e-09!169;UBERON:0006595!5.45e-09!169;UBERON:0000077!6.36e-09!130;UBERON:0000065!8.20e-09!53;UBERON:0001048!2.34e-07!168;UBERON:0002107!2.71e-07!19;UBERON:0006925!2.71e-07!19;UBERON:0008836!2.71e-07!19;UBERON:0009497!3.80e-07!25;UBERON:0000015!3.80e-07!25;UBERON:0002423!3.80e-07!25;UBERON:0006235!3.80e-07!25;UBERON:0004161!3.80e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.64e-82;9!UBERON:0001557;1.64e-82;9!UBERON:0000072;4.17e-18;37!UBERON:0000065;2.16e-16;44!UBERON:0002107;3.43e-10;19!UBERON:0006925;3.43e-10;19!UBERON:0001004;2.17e-08;65!UBERON:0002423;8.61e-08;25!UBERON:0005933;4.29e-07;2!UBERON:0005942;4.29e-07;2!UBERON:0005932;4.29e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.70e-83,9;UBERON:0001557,5.46e-39,19;UBERON:0008947,3.96e-19,38;UBERON:0003258,3.96e-19,38;UBERON:0001041,5.69e-18,87;UBERON:0000072,2.60e-15,47;UBERON:0000065,3.22e-13,54;UBERON:0004921,1.04e-12,118;UBERON:0001048,9.78e-11,160;UBERON:0002107,3.64e-10,19;UBERON:0006925,3.64e-10,19;UBERON:0008836,3.64e-10,19;UBERON:0001007,4.70e-10,145;UBERON:0001555,4.70e-10,145;UBERON:0007026,4.70e-10,145;UBERON:0001004,2.07e-09,74;UBERON:0004119,5.83e-09,160;UBERON:0000925,5.83e-09,160;UBERON:0006595,5.83e-09,160;UBERON:0008835,8.31e-09,22;UBERON:0003894,8.31e-09,22;UBERON:0009854,1.97e-08,23;UBERON:0007499,9.01e-08,25;UBERON:0009497,9.01e-08,25;UBERON:0000015,9.01e-08,25;UBERON:0002423,9.01e-08,25;UBERON:0006235,9.01e-08,25;UBERON:0004161,9.01e-08,25;UBERON:0009856,1.77e-07,26;UBERON:0005933,3.93e-07,2;UBERON:0005942,3.93e-07,2;UBERON:0005932,3.93e-07,2;UBERON:0011216,5.22e-07,223 | |||
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| ||
|short_description=p@chr2:211543284..211543294,+ | |||
}} | }} |
Latest revision as of 05:45, 29 July 2015
Short description: | p@chr2:211543284..211543294, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:211543284..211543294, + |
Coexpression cluster: | C768_Hepatocyte_liver_cervical_Hep2_epitheloid_large_nonsmall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
outer root sheath cell | 3.93e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.70e-83 | 9 |
upper respiratory tract | 5.46e-39 | 19 |
respiratory primordium | 3.96e-19 | 38 |
endoderm of foregut | 3.96e-19 | 38 |
foregut | 5.69e-18 | 87 |
segment of respiratory tract | 2.60e-15 | 47 |
respiratory tract | 3.22e-13 | 54 |
subdivision of digestive tract | 1.04e-12 | 118 |
primordium | 9.78e-11 | 160 |
liver | 3.64e-10 | 19 |
digestive gland | 3.64e-10 | 19 |
liver bud | 3.64e-10 | 19 |
digestive system | 4.70e-10 | 145 |
digestive tract | 4.70e-10 | 145 |
primitive gut | 4.70e-10 | 145 |
respiratory system | 2.07e-09 | 74 |
endoderm-derived structure | 5.83e-09 | 160 |
endoderm | 5.83e-09 | 160 |
presumptive endoderm | 5.83e-09 | 160 |
hepatic diverticulum | 8.31e-09 | 22 |
liver primordium | 8.31e-09 | 22 |
digestive tract diverticulum | 1.97e-08 | 23 |
epithelial sac | 9.01e-08 | 25 |
epithelium of foregut-midgut junction | 9.01e-08 | 25 |
anatomical boundary | 9.01e-08 | 25 |
hepatobiliary system | 9.01e-08 | 25 |
foregut-midgut junction | 9.01e-08 | 25 |
septum transversum | 9.01e-08 | 25 |
sac | 1.77e-07 | 26 |
hair root sheath | 3.93e-07 | 2 |
hair outer root sheath | 3.93e-07 | 2 |
bulb of hair follicle | 3.93e-07 | 2 |
organ system subdivision | 5.22e-07 | 223 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 7.75e-10 | 106 |
cell type cancer | 6.00e-07 | 143 |