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MCL coexpression mm9:53: Difference between revisions

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{{MCL_coexpression_mm9
{
|coexpression_dpi_cluster_scores_mean=0

Latest revision as of 14:35, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:129717274..129717298,-p1@Neurod4
Mm9::chr10:129717308..129717319,-p2@Neurod4
Mm9::chr10:44180766..44180773,-p@chr10:44180766..44180773
-
Mm9::chr10:44184001..44184021,-p@chr10:44184001..44184021
-
Mm9::chr10:44188645..44188654,+p@chr10:44188645..44188654
+
Mm9::chr10:44190515..44190527,-p@chr10:44190515..44190527
-
Mm9::chr10:44195793..44195802,+p@chr10:44195793..44195802
+
Mm9::chr10:73284605..73284619,+p1@Pcdh15
Mm9::chr10:77770114..77770138,-p10@Agpat3
Mm9::chr11:100512025..100512063,-p2@Zfp385c
Mm9::chr11:113658786..113658790,-p@chr11:113658786..113658790
-
Mm9::chr11:114641803..114641811,+p@chr11:114641803..114641811
+
Mm9::chr11:43124561..43124572,-p2@ENSMUST00000144024
Mm9::chr11:43124612..43124613,-p3@ENSMUST00000144024
Mm9::chr11:43124637..43124647,-p1@ENSMUST00000144024
Mm9::chr11:71949490..71949511,-p7@Pitpnm3
Mm9::chr11:77532228..77532251,+p@chr11:77532228..77532251
+
Mm9::chr11:95705118..95705137,+p8@Gngt2
Mm9::chr11:95705150..95705170,+p3@Gngt2
Mm9::chr11:95705180..95705189,+p17@Gngt2
Mm9::chr11:99999082..99999101,-p@chr11:99999082..99999101
-
Mm9::chr12:15822378..15822389,-p@chr12:15822378..15822389
-
Mm9::chr12:15822402..15822419,-p@chr12:15822402..15822419
-
Mm9::chr12:5815070..5815110,+p2@uc007myy.1
p2@uc007myz.1
Mm9::chr12:73279727..73279739,-p@chr12:73279727..73279739
-
Mm9::chr12:74046430..74046453,-p@chr12:74046430..74046453
-
Mm9::chr12:85887105..85887144,-p@chr12:85887105..85887144
-
Mm9::chr13:37861800..37861804,-p@chr13:37861800..37861804
-
Mm9::chr13:81684267..81684272,-p@chr13:81684267..81684272
-
Mm9::chr13:81772118..81772152,-p1@Gpr98
Mm9::chr13:98614728..98614737,+p@chr13:98614728..98614737
+
Mm9::chr14:101018573..101018580,-p@chr14:101018573..101018580
-
Mm9::chr14:49200296..49200300,+p@chr14:49200296..49200300
+
Mm9::chr14:49282415..49282426,-p4@Otx2
Mm9::chr14:49284773..49284790,-p2@Otx2
Mm9::chr14:49287107..49287125,-p3@Otx2
Mm9::chr14:49287186..49287225,-p1@Otx2
Mm9::chr14:49287326..49287328,+p@chr14:49287326..49287328
+
Mm9::chr14:57676404..57676426,-p2@Gja3
Mm9::chr14:57677052..57677058,+p@chr14:57677052..57677058
+
Mm9::chr14:58655443..58655454,+p@chr14:58655443..58655454
+
Mm9::chr14:58655501..58655506,+p@chr14:58655501..58655506
+
Mm9::chr14:58655515..58655530,+p@chr14:58655515..58655530
+
Mm9::chr14:60996420..60996431,+p@chr14:60996420..60996431
+
Mm9::chr14:60996440..60996447,+p@chr14:60996440..60996447
+
Mm9::chr15:36655026..36655032,+p@chr15:36655026..36655032
+
Mm9::chr15:37902441..37902448,-p@chr15:37902441..37902448
-
Mm9::chr15:73787551..73787588,+p@chr15:73787551..73787588
+
Mm9::chr15:75445547..75445560,+p@chr15:75445547..75445560
+
Mm9::chr15:75445590..75445596,+p@chr15:75445590..75445596
+
Mm9::chr15:79788821..79788836,-p@chr15:79788821..79788836
-
Mm9::chr15:79788839..79788856,-p@chr15:79788839..79788856
-
Mm9::chr15:84276483..84276494,+p@chr15:84276483..84276494
+
Mm9::chr15:84313273..84313295,-p@chr15:84313273..84313295
-
Mm9::chr16:21743134..21743139,-p@chr16:21743134..21743139
-
Mm9::chr16:57352926..57352938,+p8@Filip1l
Mm9::chr17:15868934..15868947,+p@chr17:15868934..15868947
+
Mm9::chr17:29817472..29817483,+p8@Ftsjd2
Mm9::chr17:30734819..30734830,-p@chr17:30734819..30734830
-
Mm9::chr17:48015645..48015689,-p9@Foxp4
Mm9::chr17:55585536..55585555,+p4@St6gal2
Mm9::chr17:80405604..80405609,-p@chr17:80405604..80405609
-
Mm9::chr18:35813995..35814003,-p@chr18:35813995..35814003
-
Mm9::chr18:55148492..55148507,-p@chr18:55148492..55148507
-
Mm9::chr18:55699408..55699420,+p@chr18:55699408..55699420
+
Mm9::chr18:66179613..66179645,-p5@Lman1
Mm9::chr18:72362248..72362252,-p@chr18:72362248..72362252
-
Mm9::chr18:84890263..84890281,+p2@Fam69c
Mm9::chr18:84890533..84890538,+p@chr18:84890533..84890538
+
Mm9::chr19:19010644..19010646,-p@chr19:19010644..19010646
-
Mm9::chr19:19010867..19010874,-p@chr19:19010867..19010874
-
Mm9::chr19:19010881..19010918,-p@chr19:19010881..19010918
-
Mm9::chr19:19011103..19011115,-p@chr19:19011103..19011115
-
Mm9::chr19:19011181..19011199,-p@chr19:19011181..19011199
-
Mm9::chr19:19106733..19106739,-p@chr19:19106733..19106739
-
Mm9::chr19:19125441..19125444,-p@chr19:19125441..19125444
-
Mm9::chr19:19153566..19153581,-p@chr19:19153566..19153581
-
Mm9::chr19:19154032..19154035,-p@chr19:19154032..19154035
-
Mm9::chr19:19174263..19174267,-p@chr19:19174263..19174267
-
Mm9::chr19:19174760..19174763,-p@chr19:19174760..19174763
-
Mm9::chr19:19185671..19185693,-p1@Rorb
Mm9::chr19:20084629..20084638,-p2@uc008gyh.1
Mm9::chr19:20191153..20191156,-p@chr19:20191153..20191156
-
Mm9::chr19:20198357..20198364,-p@chr19:20198357..20198364
-
Mm9::chr19:20198380..20198398,-p@chr19:20198380..20198398
-
Mm9::chr19:20198400..20198409,-p@chr19:20198400..20198409
-
Mm9::chr19:50647664..50647668,-p@chr19:50647664..50647668
-
Mm9::chr19:56500246..56500261,+p@chr19:56500246..56500261
+
Mm9::chr1:134263646..134263661,-p9@Tmcc2
Mm9::chr1:141111379..141111382,-p@chr1:141111379..141111382
-
Mm9::chr1:141201344..141201351,-p@chr1:141201344..141201351
-
Mm9::chr1:141273546..141273560,-p5@Crb1
Mm9::chr1:141273596..141273611,-p3@Crb1
Mm9::chr1:141273624..141273655,-p1@Crb1
Mm9::chr1:141273671..141273687,-p4@Crb1
Mm9::chr1:157589131..157589176,-p1@Lhx4
Mm9::chr1:157589255..157589266,-p2@Lhx4
Mm9::chr1:157589639..157589645,+p@chr1:157589639..157589645
+
Mm9::chr1:187265594..187265614,-p1@9630028B13Rik
Mm9::chr1:187265620..187265640,-p2@9630028B13Rik
Mm9::chr1:44608593..44608603,+p7@Gulp1
Mm9::chr1:65095132..65095134,+p@chr1:65095132..65095134
+
Mm9::chr1:65108757..65108768,-p@chr1:65108757..65108768
-
Mm9::chr1:65126802..65126820,+p@chr1:65126802..65126820
+
Mm9::chr1:9675616..9675620,-p@chr1:9675616..9675620
-
Mm9::chr1:9690398..9690410,-p2@Mybl1
Mm9::chr2:105523171..105523175,+p24@Pax6
Mm9::chr2:132550027..132550036,+p@chr2:132550027..132550036
+
Mm9::chr2:154242199..154242202,-p@chr2:154242199..154242202
-
Mm9::chr2:154247044..154247056,-p@chr2:154247044..154247056
-
Mm9::chr2:158435337..158435348,+p@chr2:158435337..158435348
+
Mm9::chr2:163031389..163031394,+p@chr2:163031389..163031394
+
Mm9::chr2:173094940..173094948,-p@chr2:173094940..173094948
-
Mm9::chr2:29108331..29108346,-p5@6530402F18Rik
Mm9::chr2:29108347..29108352,-p13@6530402F18Rik
Mm9::chr2:29108357..29108372,-p4@6530402F18Rik
Mm9::chr2:32678693..32678720,-p@chr2:32678693..32678720
-
Mm9::chr2:38021610..38021640,-p4@Dennd1a
Mm9::chr2:4221583..4221614,+p16@Frmd4a
Mm9::chr2:4221636..4221645,+p46@Frmd4a
Mm9::chr2:4221650..4221663,+p26@Frmd4a
Mm9::chr2:4221669..4221681,+p35@Frmd4a
Mm9::chr2:51893505..51893521,+p4@Tnfaip6
Mm9::chr2:51893525..51893540,+p3@Tnfaip6
Mm9::chr2:79249757..79249759,-p@chr2:79249757..79249759
-
Mm9::chr2:79295122..79295129,-p@chr2:79295122..79295129
-
Mm9::chr2:79295178..79295188,-p@chr2:79295178..79295188
-
Mm9::chr2:93906859..93906868,-p3@Hsd17b12
Mm9::chr2:93906904..93906912,-p5@Hsd17b12
Mm9::chr3:121876656..121876674,+p@chr3:121876656..121876674
+
Mm9::chr3:129525343..129525350,-p@chr3:129525343..129525350
-
Mm9::chr3:129525389..129525400,-p@chr3:129525389..129525400
-
Mm9::chr3:129525405..129525428,-p1@Rrh
Mm9::chr3:17227906..17227926,-p@chr3:17227906..17227926
-
Mm9::chr3:17303172..17303175,-p@chr3:17303172..17303175
-
Mm9::chr3:17614648..17614652,-p@chr3:17614648..17614652
-
Mm9::chr3:17661249..17661267,-p@chr3:17661249..17661267
-
Mm9::chr3:17685607..17685616,-p@chr3:17685607..17685616
-
Mm9::chr3:26052563..26052579,-p10@Nlgn1
Mm9::chr3:26220574..26220578,-p@chr3:26220574..26220578
-
Mm9::chr3:58425133..58425136,-p@chr3:58425133..58425136
-
Mm9::chr3:96503225..96503227,+p@chr3:96503225..96503227
+
Mm9::chr4:106799222..106799227,+p4@ENSMUST00000145510
p4@uc008tzg.1
Mm9::chr4:106799277..106799294,+p1@ENSMUST00000145510
p1@uc008tzg.1
Mm9::chr4:106799303..106799321,+p2@ENSMUST00000145510
p2@uc008tzg.1
Mm9::chr4:106799632..106799635,+p@chr4:106799632..106799635
+
Mm9::chr4:106800550..106800554,+p@chr4:106800550..106800554
+
Mm9::chr4:106807736..106807740,+p@chr4:106807736..106807740
+
Mm9::chr4:107641207..107641250,+p@chr4:107641207..107641250
+
Mm9::chr4:117701804..117701843,-p@chr4:117701804..117701843
-
Mm9::chr4:133524064..133524068,+p@chr4:133524064..133524068
+
Mm9::chr4:133524526..133524536,-p11@Hmgn2-ps1
p12@Gm10282
p12@Gm6594
p12@Gm6750
p12@Gm7931
p12@Gm9525
p12@Hmgn2
Mm9::chr4:136465750..136465765,+p@chr4:136465750..136465765
+
Mm9::chr4:136465766..136465773,+p@chr4:136465766..136465773
+
Mm9::chr4:136501530..136501533,+p@chr4:136501530..136501533
+
Mm9::chr4:136501539..136501549,+p@chr4:136501539..136501549
+
Mm9::chr4:136501555..136501581,+p@chr4:136501555..136501581
+
Mm9::chr4:136501594..136501609,+p@chr4:136501594..136501609
+
Mm9::chr4:136501616..136501621,+p@chr4:136501616..136501621
+
Mm9::chr4:136508940..136508946,+p@chr4:136508940..136508946
+
Mm9::chr4:136512486..136512493,-p@chr4:136512486..136512493
-
Mm9::chr4:148315176..148315190,+p@chr4:148315176..148315190
+
Mm9::chr4:149123540..149123549,-p@chr4:149123540..149123549
-
Mm9::chr4:149123561..149123574,-p@chr4:149123561..149123574
-
Mm9::chr4:151505442..151505445,-p18@Espn
Mm9::chr4:151505519..151505529,-p15@Espn
Mm9::chr4:151506454..151506470,-p14@Espn
Mm9::chr4:151506506..151506524,-p8@Espn
Mm9::chr4:151862414..151862441,+p6@Nphp4
Mm9::chr4:153068355..153068367,+p@chr4:153068355..153068367
+
Mm9::chr4:19208009..19208054,+p1@Cngb3
Mm9::chr4:19208057..19208066,+p3@Cngb3
Mm9::chr4:19208067..19208078,+p2@Cngb3
Mm9::chr4:21612929..21612952,-p1@Prdm13
Mm9::chr4:41581884..41581932,+p@chr4:41581884..41581932
+
Mm9::chr4:41678256..41678295,-p1@Arid3c
Mm9::chr4:82207594..82207596,-p@chr4:82207594..82207596
-
Mm9::chr4:82333725..82333726,-p@chr4:82333725..82333726
-
Mm9::chr4:82351527..82351541,-p16@Nfib
Mm9::chr4:82351544..82351563,-p15@Nfib
Mm9::chr4:82351566..82351607,-p10@Nfib
Mm9::chr4:97251354..97251368,-p2@ENSMUST00000147925
Mm9::chr4:99656517..99656527,+p@chr4:99656517..99656527
+
Mm9::chr4:99656590..99656616,+p@chr4:99656590..99656616
+
Mm9::chr5:100151001..100151005,-p@chr5:100151001..100151005
-
Mm9::chr5:100157820..100157831,-p2@ENSMUST00000160803
Mm9::chr5:100157875..100157901,-p1@ENSMUST00000160803
Mm9::chr5:114724254..114724278,-p4@Foxn4
Mm9::chr5:115879705..115879716,+p8@Msi1
Mm9::chr5:115881368..115881391,+p@chr5:115881368..115881391
+
Mm9::chr5:115884983..115884995,+p28@Msi1
Mm9::chr5:115885009..115885038,+p11@Msi1
Mm9::chr5:115885049..115885073,+p19@Msi1
Mm9::chr5:115885085..115885098,+p21@Msi1
Mm9::chr5:115885103..115885114,+p23@Msi1
Mm9::chr5:115885136..115885153,+p25@Msi1
Mm9::chr5:115885425..115885444,+p4@Msi1
Mm9::chr5:115885454..115885461,+p24@Msi1
Mm9::chr5:116995054..116995064,-p@chr5:116995054..116995064
-
Mm9::chr5:121185018..121185063,+p@chr5:121185018..121185063
+
Mm9::chr5:123752411..123752420,+p7@Wdr66
Mm9::chr5:123752422..123752435,+p4@Wdr66
Mm9::chr5:123752506..123752517,+p3@Wdr66
Mm9::chr5:123760358..123760369,-p1@ENSMUST00000133476
Mm9::chr5:123760508..123760531,+p@chr5:123760508..123760531
+
Mm9::chr5:123760542..123760553,+p@chr5:123760542..123760553
+
Mm9::chr5:134266664..134266676,-p@chr5:134266664..134266676
-
Mm9::chr5:134266678..134266685,-p@chr5:134266678..134266685
-
Mm9::chr5:134266714..134266721,-p@chr5:134266714..134266721
-
Mm9::chr5:35738305..35738311,+p@chr5:35738305..35738311
+
Mm9::chr5:35742664..35742672,-p@chr5:35742664..35742672
-
Mm9::chr5:38891401..38891407,+p@chr5:38891401..38891407
+
Mm9::chr5:46398781..46398796,-p@chr5:46398781..46398796
-
Mm9::chr5:46398809..46398820,-p@chr5:46398809..46398820
-
Mm9::chr5:46398830..46398841,-p@chr5:46398830..46398841
-
Mm9::chr5:4779936..4779937,-p@chr5:4779936..4779937
-
Mm9::chr5:66728864..66728885,-p5@Apbb2
Mm9::chr6:124790076..124790087,-p4@Gnb3
Mm9::chr6:124790210..124790223,-p2@Gnb3
Mm9::chr6:126485015..126485052,-p@chr6:126485015..126485052
-
Mm9::chr6:134742488..134742497,-p16@Dusp16
Mm9::chr6:144996125..144996134,-p20@Bcat1
Mm9::chr6:144997058..144997068,+p@chr6:144997058..144997068
+
Mm9::chr6:29330517..29330520,-p6@Opn1sw
Mm9::chr6:29348920..29348931,+p4@Ccdc136
Mm9::chr6:29348959..29348966,+p6@Ccdc136
Mm9::chr6:30097094..30097108,-p@chr6:30097094..30097108
-
Mm9::chr6:30107565..30107569,-p@chr6:30107565..30107569
-
Mm9::chr6:30124100..30124109,-p@chr6:30124100..30124109
-
Mm9::chr6:30124117..30124136,-p@chr6:30124117..30124136
-
Mm9::chr6:30126481..30126485,+p1@BB283400
Mm9::chr6:96065908..96065912,-p@chr6:96065908..96065912
-
Mm9::chr7:106124484..106124507,-p@chr7:106124484..106124507
-
Mm9::chr7:108311543..108311551,+p@chr7:108311543..108311551
+
Mm9::chr7:119283904..119283915,-p@chr7:119283904..119283915
-
Mm9::chr7:133725277..133725290,-p@chr7:133725277..133725290
-
Mm9::chr7:135458294..135458313,+p@chr7:135458294..135458313
+
Mm9::chr7:139912327..139912347,-p@chr7:139912327..139912347
-
Mm9::chr7:139912393..139912395,-p@chr7:139912393..139912395
-
Mm9::chr7:140951820..140951854,-p7@Dhx32
Mm9::chr7:146516701..146516707,+p@chr7:146516701..146516707
+
Mm9::chr7:146533663..146533678,+p@chr7:146533663..146533678
+
Mm9::chr7:149558646..149558680,-p5@6330512M04Rik
Mm9::chr7:16471513..16471522,+p@chr7:16471513..16471522
+
Mm9::chr7:17478458..17478472,+p@chr7:17478458..17478472
+
Mm9::chr7:28041498..28041523,+p@chr7:28041498..28041523
+
Mm9::chr7:29095406..29095436,-p@chr7:29095406..29095436
-
Mm9::chr7:38208067..38208071,-p@chr7:38208067..38208071
-
Mm9::chr7:38555336..38555360,-p@chr7:38555336..38555360
-
Mm9::chr7:56415792..56415804,+p@chr7:56415792..56415804
+
Mm9::chr7:56415878..56415890,+p@chr7:56415878..56415890
+
Mm9::chr7:56416069..56416082,+p@chr7:56416069..56416082
+
Mm9::chr7:56416086..56416093,+p@chr7:56416086..56416093
+
Mm9::chr7:56416097..56416138,+p@chr7:56416097..56416138
+
Mm9::chr7:56416146..56416158,+p@chr7:56416146..56416158
+
Mm9::chr8:123012391..123012410,+p8@Gse1
Mm9::chr9:106216669..106216673,-p@chr9:106216669..106216673
-
Mm9::chr9:107964319..107964338,-p11@Rnf123
Mm9::chr9:110147424..110147448,+p@chr9:110147424..110147448
+
Mm9::chr9:110147453..110147468,+p@chr9:110147453..110147468
+
Mm9::chr9:123760159..123760194,+p@chr9:123760159..123760194
+
Mm9::chr9:30928447..30928454,-p@chr9:30928447..30928454
-
Mm9::chr9:59797847..59797858,-p5@Nr2e3
Mm9::chr9:82908462..82908471,+p@chr9:82908462..82908471
+
Mm9::chr9:83006179..83006201,-p6@Hmgn3
Mm9::chr9:83006202..83006225,-p5@Hmgn3
Mm9::chr9:83507551..83507555,-p@chr9:83507551..83507555
-
Mm9::chr9:83558570..83558573,+p@chr9:83558570..83558573
+
Mm9::chrX:166365481..166365521,+p10@Mid1
Mm9::chrX:34718174..34718176,+p@chrX:34718174..34718176
+
Mm9::chrX:34719593..34719602,+p@chrX:34719593..34719602
+
Mm9::chrX:34730435..34730439,+p@chrX:34730435..34730439
+
Mm9::chrX:80288440..80288464,+p20@Dmd
Mm9::chrX:80288558..80288565,+p23@Dmd
Mm9::chrX:80288567..80288579,+p11@Dmd
Mm9::chrX:80288631..80288645,+p19@Dmd


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0007423sensory organ development9.47654986616679e-07
GO:0046530photoreceptor cell differentiation9.47654986616679e-07
GO:0001654eye development3.26497410914507e-06
GO:0007601visual perception3.26497410914507e-06
GO:0050953sensory perception of light stimulus3.26497410914507e-06
GO:0001754eye photoreceptor cell differentiation1.10678440117758e-05
GO:0042461photoreceptor cell development1.23801671709141e-05
GO:0048856anatomical structure development2.52104981925866e-05
GO:0007399nervous system development6.54879175569097e-05
GO:0048731system development7.40857937582976e-05
GO:0007275multicellular organismal development0.000259376274293575
GO:0048592eye morphogenesis0.000354937556089943
GO:0042462eye photoreceptor cell development0.000389619127512225
GO:0045165cell fate commitment0.000424267990315689
GO:0030182neuron differentiation0.000518589445024273
GO:0000904cellular morphogenesis during differentiation0.000533046302310004
GO:0048699generation of neurons0.00101406563058271
GO:0048663neuron fate commitment0.00101406563058271
GO:0000902cell morphogenesis0.00128380490666511
GO:0032989cellular structure morphogenesis0.00128380490666511
GO:0022008neurogenesis0.00128380490666511
GO:0048468cell development0.00128380490666511
GO:0048513organ development0.00152786075503962
GO:0043010camera-type eye development0.00163647959389495
GO:0003677DNA binding0.00289419787113146
GO:0045449regulation of transcription0.00354737439227846
GO:0048869cellular developmental process0.00354737439227846
GO:0030154cell differentiation0.00354737439227846
GO:0050910detection of mechanical stimulus during sensory perception of sound0.00380131779332607
GO:0032502developmental process0.00393525272557421
GO:0043565sequence-specific DNA binding0.00393525272557421
GO:0019219regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.00401755776928268
GO:0006350transcription0.00480664060392488
GO:0009582detection of abiotic stimulus0.00510922351920809
GO:0009581detection of external stimulus0.00643095129863435
GO:0010468regulation of gene expression0.00741015284542047
GO:0050974detection of mechanical stimulus during sensory perception0.00748900152014095
GO:0018298protein-chromophore linkage0.00748900152014095
GO:0006355regulation of transcription, DNA-dependent0.00748900152014095
GO:0009887organ morphogenesis0.00748900152014095
GO:0003676nucleic acid binding0.00748900152014095
GO:0007417central nervous system development0.00748900152014095
GO:0001764neuron migration0.00765330740335447
GO:0050906detection of stimulus during sensory perception0.00765330740335447
GO:0045893positive regulation of transcription, DNA-dependent0.00770577128692022
GO:0006351transcription, DNA-dependent0.00775924259884845
GO:0032774RNA biosynthetic process0.00784159824812893
GO:0050982detection of mechanical stimulus0.00843926355248047
GO:0031323regulation of cellular metabolic process0.00997870906888017
GO:0001750photoreceptor outer segment0.0108672016843637
GO:0009653anatomical structure morphogenesis0.0116299560046059
GO:0051606detection of stimulus0.012522675779904
GO:0048839inner ear development0.012522675779904
GO:0005902microvillus0.012522675779904
GO:0031513nonmotile primary cilium0.012522675779904
GO:0009612response to mechanical stimulus0.012522675779904
GO:0045941positive regulation of transcription0.0133412526354085
GO:0050794regulation of cellular process0.0139210877220211
GO:0019222regulation of metabolic process0.0139210877220211
GO:0045935positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0139210877220211
GO:0043583ear development0.0141951229000746
GO:0007411axon guidance0.0156180884435427
GO:0003700transcription factor activity0.0178220304677565
GO:0007420brain development0.0186601414133902
GO:0048523negative regulation of cellular process0.0192615543076
GO:0048489synaptic vesicle transport0.0195555378469325
GO:0045944positive regulation of transcription from RNA polymerase II promoter0.0228567259848923
GO:0009952anterior/posterior pattern formation0.023438590037867
GO:0045664regulation of neuron differentiation0.0236534286986665
GO:0044464cell part0.0236534286986665
GO:0005623cell0.0236534286986665
GO:0065007biological regulation0.0236534286986665
GO:0030900forebrain development0.0236534286986665
GO:0021902commitment of a neuronal cell to a specific type of neuron in the forebrain0.0236534286986665
GO:0042706eye photoreceptor cell fate commitment0.0236534286986665
GO:0021877forebrain neuron fate commitment0.0236534286986665
GO:0051494negative regulation of cytoskeleton organization and biogenesis0.0236534286986665
GO:0046552photoreceptor cell fate commitment0.0236534286986665
GO:0005223intracellular cGMP activated cation channel activity0.0236534286986665
GO:0051639actin filament network formation0.0236534286986665
GO:0003905alkylbase DNA N-glycosylase activity0.0236534286986665
GO:0048519negative regulation of biological process0.0236534286986665
GO:0031325positive regulation of cellular metabolic process0.0236534286986665
GO:0016866intramolecular transferase activity0.0243945073041304
GO:0048666neuron development0.0259588344427676
GO:0042995cell projection0.0273380407185353
GO:0009893positive regulation of metabolic process0.0283128065220449
GO:0005834heterotrimeric G-protein complex0.0300677457212821
GO:0032501multicellular organismal process0.0313232354750019
GO:0006357regulation of transcription from RNA polymerase II promoter0.0313643933982341
GO:0008285negative regulation of cell proliferation0.0332766878262687
GO:0006139nucleobase, nucleoside, nucleotide and nucleic acid metabolic process0.0374920788039573
GO:0007015actin filament organization0.0374920788039573
GO:0019870potassium channel inhibitor activity0.0374920788039573
GO:0021526medial motor column neuron differentiation0.0374920788039573
GO:0009082branched chain family amino acid biosynthetic process0.0374920788039573
GO:0003835beta-galactoside alpha-2,6-sialyltransferase activity0.0374920788039573
GO:0016080synaptic vesicle targeting0.0374920788039573
GO:0045872positive regulation of rhodopsin gene expression0.0374920788039573
GO:0050973detection of mechanical stimulus during equilibrioception0.0374920788039573
GO:0030046parallel actin filament bundle formation0.0374920788039573
GO:0004084branched-chain-amino-acid transaminase activity0.0374920788039573
GO:0015459potassium channel regulator activity0.0374920788039573
GO:0050789regulation of biological process0.0391773796645682
GO:0030902hindbrain development0.0404395852530488
GO:0006366transcription from RNA polymerase II promoter0.0409120841740169
GO:0009953dorsal/ventral pattern formation0.0410531829228835
GO:0048858cell projection morphogenesis0.0410531829228835
GO:0032990cell part morphogenesis0.0410531829228835
GO:0030030cell projection organization and biogenesis0.0410531829228835
GO:0016070RNA metabolic process0.0423573150372536
GO:0016477cell migration0.043554932354085
GO:0003707steroid hormone receptor activity0.046649963027169
GO:0004879ligand-dependent nuclear receptor activity0.046649963027169
GO:0003002regionalization0.046649963027169
GO:0050957equilibrioception0.046649963027169
GO:0021523somatic motor neuron differentiation0.046649963027169
GO:0005221intracellular cyclic nucleotide activated cation channel activity0.046649963027169
GO:0035035histone acetyltransferase binding0.046649963027169
GO:0007468regulation of rhodopsin gene expression0.046649963027169
GO:0045749negative regulation of S phase of mitotic cell cycle0.046649963027169
GO:0043267negative regulation of potassium ion transport0.046649963027169
GO:0019789SUMO ligase activity0.046649963027169
GO:0043855cyclic nucleotide-gated ion channel activity0.046649963027169
GO:0019897extrinsic to plasma membrane0.0476480414634001



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
eye2.30e-789
camera-type eye2.30e-789
simple eye2.30e-789
immature eye2.30e-789
ocular region2.30e-789
visual system2.30e-789
face2.30e-789
optic cup2.30e-789
optic vesicle2.30e-789
eye primordium2.30e-789
subdivision of head4.15e-6411
sense organ9.27e-5912
sensory system9.27e-5912
entire sense organ system9.27e-5912
head3.12e-5413
ectodermal placode3.12e-5413
craniocervical region2.00e-1936
anterior region of body3.35e-1643
pre-chordal neural plate3.63e-1449
neurectoderm9.81e-1164
neural plate9.81e-1164
presumptive neural plate9.81e-1164
ecto-epithelium2.40e-0973
structure with developmental contribution from neural crest2.71e-0792
ectoderm-derived structure4.82e-0795
ectoderm4.82e-0795
presumptive ectoderm4.82e-0795


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.92488e-09
MA0004.12.73421
MA0006.10.0382487
MA0007.10.0276986
MA0009.10.133894
MA0014.11.39528e-10
MA0017.10.152597
MA0019.10.271126
MA0024.10.0934332
MA0025.10.0263589
MA0027.11.00165
MA0028.10.000182174
MA0029.11.11802
MA0030.10.880399
MA0031.11.54348
MA0038.12.19478
MA0040.10.666348
MA0041.11.72803
MA0042.11.17137
MA0043.10.00852513
MA0046.11.35887
MA0048.10.0344471
MA0050.10.0127441
MA0051.10.0504146
MA0052.10.15607
MA0055.10.0222429
MA0056.10
MA0057.10.219272
MA0058.14.46774
MA0059.14.18594
MA0060.10.00213683
MA0061.10.327571
MA0063.10
MA0066.13.02408
MA0067.10.194737
MA0068.10.183229
MA0069.11.27761
MA0070.10.444073
MA0071.15.64111
MA0072.19.15312
MA0073.12.28554e-06
MA0074.10.00324229
MA0076.14.74676e-05
MA0077.12.5249
MA0078.11.75857
MA0081.10.371337
MA0083.10.122515
MA0084.12.42867
MA0087.11.1101
MA0088.10.00739779
MA0089.10
MA0090.10.0524376
MA0091.112.8795
MA0092.10.937985
MA0093.14.60458
MA0095.10
MA0098.10
MA0100.10.101171
MA0101.10.484423
MA0103.10.248883
MA0105.10.00358394
MA0106.10.0870837
MA0107.10.443467
MA0108.20.658013
MA0109.10
MA0111.11.07172
MA0113.10.866026
MA0114.10.252185
MA0115.10.26004
MA0116.10.0563075
MA0117.10.0342393
MA0119.10.231833
MA0122.10.657127
MA0124.10.349294
MA0125.12.47186
MA0130.10
MA0131.10.0186491
MA0132.10
MA0133.10
MA0135.15.87184
MA0136.10.00503415
MA0139.10.000543714
MA0140.10.325944
MA0141.10.0791752
MA0142.10.891331
MA0143.10.970123
MA0144.10.666653
MA0145.10.0368569
MA0146.11.88312e-05
MA0147.10.138843
MA0148.10.264562
MA0149.12.45202e-06
MA0062.22.48206e-09
MA0035.20.598197
MA0039.28.73328e-10
MA0138.20.0837648
MA0002.20.594661
MA0137.20.14777
MA0104.20.129458
MA0047.20.20967
MA0112.22.31272
MA0065.20.0761198
MA0150.10.790357
MA0151.10
MA0152.10.0436901
MA0153.10.0653808
MA0154.10.316983
MA0155.10.601358
MA0156.10.00801389
MA0157.10.541625
MA0158.10
MA0159.10.136709
MA0160.10.137012
MA0161.10
MA0162.11.47502e-09
MA0163.10.0592145
MA0164.11.37287
MA0080.20.000522195
MA0018.20.00620557
MA0099.20.00469675
MA0079.23.53185e-13
MA0102.20.230033
MA0258.11.00271
MA0259.10.0167827
MA0442.10
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