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MCL coexpression mm9:477: Difference between revisions

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{{MCL_coexpression_mm9
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|gostat_on_MCL_coexpression=
}}

Latest revision as of 15:22, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:127675090..127675125,+p7@LOC100504989
p7@Timeless
Mm9::chr11:75751228..75751254,-p3@Rph3al
Mm9::chr14:109313061..109313076,-p5@Slitrk1
Mm9::chr17:29505790..29505796,-p@chr17:29505790..29505796
-
Mm9::chr17:29505902..29505928,+p3@Fgd2
Mm9::chr17:29505934..29505953,+p5@Fgd2
Mm9::chr2:157397006..157397025,-p3@Blcap
Mm9::chr2:157397040..157397052,-p8@Blcap
Mm9::chr4:139040826..139040847,+p@chr4:139040826..139040847
+
Mm9::chr5:33861619..33861630,-p@chr5:33861619..33861630
-
Mm9::chr7:119534763..119534783,+p@chr7:119534763..119534783
+
Mm9::chr7:86027505..86027520,+p@chr7:86027505..86027520
+
Mm9::chr8:121989176..121989205,+p@chr8:121989176..121989205
+
Mm9::chr8:122701320..122701335,-p1@Fam92b
Mm9::chrX:149441004..149441047,+p1@Usp51


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
pituitary gland2.84e-128
gland of diencephalon2.84e-128
neuroendocrine gland2.84e-128
diencephalon1.99e-1110
future diencephalon1.99e-1110


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.13442
MA0004.10.239244
MA0006.10.118059
MA0007.10.227553
MA0009.10.623671
MA0014.10.0171266
MA0017.10.420732
MA0019.10.456268
MA0024.10.582844
MA0025.10.845702
MA0027.12.24512
MA0028.10.12472
MA0029.10.562703
MA0030.10.568779
MA0031.10.535959
MA0038.10.942753
MA0040.10.635404
MA0041.10.18185
MA0042.10.172351
MA0043.10.71494
MA0046.10.657417
MA0048.11.11639
MA0050.10.270164
MA0051.10.366328
MA0052.10.642973
MA0055.12.15001
MA0056.10
MA0057.10.431584
MA0058.10.167504
MA0059.10.176308
MA0060.10.249987
MA0061.12.09879
MA0063.10
MA0066.10.349199
MA0067.10.953264
MA0068.10.724284
MA0069.10.643292
MA0070.11.53283
MA0071.10.269487
MA0072.10.626238
MA0073.14.04718
MA0074.10.318792
MA0076.10.148159
MA0077.10.605975
MA0078.10.395048
MA0081.10.193203
MA0083.10.714187
MA0084.11.27474
MA0087.10.673355
MA0088.10.499348
MA0089.10
MA0090.10.212772
MA0091.10.696557
MA0092.10.213012
MA0093.10.130107
MA0095.10
MA0098.10
MA0100.10.309116
MA0101.10.538493
MA0103.10.439015
MA0105.12.94794
MA0106.11.83098
MA0107.10.428571
MA0108.22.08405
MA0109.10
MA0111.10.635898
MA0113.10.377232
MA0114.10.291992
MA0115.10.717599
MA0116.11.80308
MA0117.10.686999
MA0119.10.53953
MA0122.10.705806
MA0124.10.901619
MA0125.10.830088
MA0130.10
MA0131.10.452196
MA0132.10
MA0133.10
MA0135.10.749615
MA0136.10.335579
MA0139.10.45049
MA0140.10.30902
MA0141.10.472769
MA0142.10.522654
MA0143.10.391481
MA0144.10.296781
MA0145.11.15108
MA0146.10.780669
MA0147.10.0952713
MA0148.10.252062
MA0149.11.04619
MA0062.20.0394542
MA0035.20.312946
MA0039.21.65816
MA0138.20.445088
MA0002.21.21215
MA0137.20.153989
MA0104.20.0641853
MA0047.20.357963
MA0112.20.0599393
MA0065.20.822318
MA0150.10.227466
MA0151.10
MA0152.10.358055
MA0153.10.765498
MA0154.11.96183
MA0155.10.916876
MA0156.10.147567
MA0157.10.493416
MA0158.10
MA0159.10.332142
MA0160.11.30669
MA0161.10
MA0162.10.458181
MA0163.11.09661
MA0164.10.892289
MA0080.20.430071
MA0018.20.344133
MA0099.20.439458
MA0079.21.56027
MA0102.21.32652
MA0258.10.0789466
MA0259.10.0890842
MA0442.10
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