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MCL coexpression mm9:84: Difference between revisions

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{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=GO:0005179;hormone activity;1.55673854052896e-06;18976,12640,14599,14308,16866,19109!GO:0005102;receptor binding;0.000667694344920263;18976,76071,12640,14599,14308,16866,19109!GO:0030141;secretory granule;0.00139708723143257;18976,14599,19109!GO:0040018;positive regulation of multicellular organism growth;0.0265181819214404;18736,14599!GO:0045927;positive regulation of growth;0.0297602743015208;18736,14599!GO:0005126;hematopoietin/interferon-class (D200-domain) cytokine receptor binding;0.0340312509722374;14599,19109!GO:0032962;positive regulation of inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0032958;inositol phosphate biosynthetic process;0.0340312509722374;18736!GO:0032960;regulation of inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0032959;inositol trisphosphate biosynthetic process;0.0340312509722374;18736!GO:0004968;gonadotropin-releasing hormone receptor activity;0.0340312509722374;14715!GO:0016023;cytoplasmic membrane-bound vesicle;0.0340312509722374;18976,14599,19109!GO:0031988;membrane-bound vesicle;0.0340312509722374;18976,14599,19109!GO:0007612;learning;0.0340312509722374;18163,11419!GO:0019717;synaptosome;0.0340312509722374;50791,11419!GO:0040014;regulation of multicellular organism growth;0.0340312509722374;18736,14599!GO:0008283;cell proliferation;0.0340312509722374;18736,14308,26934,19109!GO:0006021;inositol biosynthetic process;0.0340312509722374;18736!GO:0005148;prolactin receptor binding;0.0340312509722374;19109!GO:0043647;inositol phosphate metabolic process;0.0340312509722374;18736!GO:0032957;inositol trisphosphate metabolic process;0.0340312509722374;18736!GO:0005131;growth hormone receptor binding;0.0340312509722374;14599!GO:0060133;somatotropin secreting cell development;0.0340312509722374;18736!GO:0035264;multicellular organism growth;0.0340312509722374;18736,14599!GO:0007611;learning and/or memory;0.0404508747914723;18163,11419!GO:0060126;somatotropin secreting cell differentiation;0.0404508747914723;18736!GO:0007262;STAT protein nuclear translocation;0.0404508747914723;19109!GO:0001101;response to acid;0.0404508747914723;11419!GO:0033143;regulation of steroid hormone receptor signaling pathway;0.0404508747914723;14599!GO:0043567;regulation of insulin-like growth factor receptor signaling pathway;0.0404508747914723;18736!GO:0060011;Sertoli cell proliferation;0.0466662557784434;14308!GO:0045913;positive regulation of carbohydrate metabolic process;0.0466662557784434;18736!GO:0050811;GABA receptor binding;0.0466662557784434;76071!GO:0043255;regulation of carbohydrate biosynthetic process;0.0466662557784434;18736!GO:0031410;cytoplasmic vesicle;0.0466662557784434;18976,14599,19109!GO:0005515;protein binding;0.0466662557784434;81630,76071,18163,50791,18976,18736,12640,14308,14599,16866,19109,12695!GO:0031982;vesicle;0.0474248118340476;18976,14599,19109!}}
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vesicle;0.0340312509722374;18976,14599,19109!GO:0031988;membrane-bound vesicle;0.0340312509722374;18976,14599,19109!GO:0007612;learning;0.0340312509722374;18163,11419!GO:0019717;synaptosome;0.0340312509722374;50791,11419!GO:0040014;regulation of multicellular organism growth;0.0340312509722374;18736,14599!GO:0008283;cell proliferation;0.0340312509722374;18736,14308,26934,19109!GO:0006021;inositol biosynthetic process;0.0340312509722374;18736!GO:0005148;prolactin receptor binding;0.0340312509722374;19109!GO:0043647;inositol phosphate metabolic process;0.0340312509722374;18736!GO:0032957;inositol trisphosphate metabolic process;0.0340312509722374;18736!GO:0005131;growth hormone receptor binding;0.0340312509722374;14599!GO:0060133;somatotropin secreting cell development;0.0340312509722374;18736!GO:0035264;multicellular organism growth;0.0340312509722374;18736,14599!GO:0007611;learning and/or memory;0.0404508747914723;18163,11419!GO:0060126;somatotropin secreting cell differentiation;0.0404508747914723;18736!GO:0007262;STAT protein nuclear translocation;0.0404508747914723;19109!GO:0001101;response to acid;0.0404508747914723;11419!GO:0033143;regulation of steroid hormone receptor signaling pathway;0.0404508747914723;14599!GO:0043567;regulation of insulin-like growth factor receptor signaling pathway;0.0404508747914723;18736!GO:0060011;Sertoli cell proliferation;0.0466662557784434;14308!GO:0045913;positive regulation of carbohydrate metabolic process;0.0466662557784434;18736!GO:0050811;GABA receptor binding;0.0466662557784434;76071!GO:0043255;regulation of carbohydrate biosynthetic process;0.0466662557784434;18736!GO:0031410;cytoplasmic vesicle;0.0466662557784434;18976,14599,19109!GO:0005515;protein binding;0.0466662557784434;81630,76071,18163,50791,18976,18736,12640,14308,14599,16866,19109,12695!GO:0031982;vesicle;0.0474248118340476;18976,14599,19109!|ontology_enrichment_celltype=|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0000007!6.68e-44!8;UBERON:0003296!6.68e-44!8;UBERON:0010133!6.68e-44!8;UBERON:0001894!2.37e-35!10;UBERON:0006222!2.37e-35!10;UBERON:0002780!9.26e-10!39;UBERON:0001890!9.26e-10!39;UBERON:0006240!9.26e-10!39;UBERON:0003080!1.55e-09!40;UBERON:0002616!2.15e-08!46;UBERON:0000955!3.12e-08!47;UBERON:0006238!3.12e-08!47;UBERON:0003056!6.29e-08!49;UBERON:0001049!1.63e-07!52;UBERON:0005068!1.63e-07!52;UBERON:0006241!1.63e-07!52;UBERON:0007135!1.63e-07!52;UBERON:0000073!2.91e-07!54|tfbs_overrepresentation_for_novel_motifs=0.192068,0.0189241,0.00294593,0.594255,0.736243,0.229617,0.00511781,0.932512,1.05798,0.0458021,0.0105005,0.183503,0.0109636,0.000843902,0.2509,0,0.0507427,1.81357,0.011254,0.424527,1.73133,0.0680323,0.125979,0.129503,0.152405,0.442147,1.95624,0.281326,0.0457539,0.826434,0.0851132,0.252864,0.110086,0.235758,0.000666028,2.07683e-06,3.87802e-05,0.291966,0.965102,6.06653e-05,0.444317,0.160935,0.237639,1.49691,0.0369515,0.00284435,0.308718,0.472373,0.291056,1.18719,0.256234,0.343591,0.135939,0.0591355,1.80407,1.03253,2.30142,0.162688,0.793003,0.0642899,0.0206521,0.113479,1.22374,0.00760783,0.0738103,4.5281,0.380888,0.887271,1.02253,0.232452,0.0147565,0.0134716,7.58737e-08,0.264762,2.08633e-07,0.0363233,0.781792,0.286523,0.975052,1.07376,0.404226,0.0119852,1.70748,0.0424078,0.0407696,1.69778e-09,1.7239e-05,0.0301785,0.0259112,0.459155,0.154721,0.162505,0.502505,0.390812,1.81703e-06,0.00964254,0.339392,0.273555,0.00429696,2.50813,0.1371,0.10298,1.17224,0.68965,0.443747,0.0182873,0.0149239,0.115263,0.0122265,0.0817313,0.108442,0.200054,0.708663,0.0328349,0.478968,0.17519,0.000598373,1.02217,0.750339,1.37213,0.965053,0.208423,0.447612,0.284792,1.05445,0.667718,2.25256,0.0251799,0.119067,0.00988285,2.65434,0.0582598,0.105647,0.268631,0.979596,0.000381564,0.132977,0.547898,0.442713,0.779721,0.433535,0.122,1.23344,0.109878,0.041413,0.161721,1.35263,0.743537,0.452902,0.0169687,0.099931,3.47047e-10,0.0596353,0.0603789,0.0750167,4.17339,0.529292,0.400015,0.115407,0.00173211,0.14891,0.361671,0.0835361,0.0291396,0.240464,0.398231,0.454524,0.447625,0.0318579|tfbs_overrepresentation_jaspar=MA0003.1;1.4706e-14,MA0004.1;0.0119637,MA0006.1;0.000562255,MA0007.1;0.699403,MA0009.1;1.22521,MA0014.1;2.3556e-11,MA0017.1;0.00134063,MA0019.1;0.360704,MA0024.1;0.230852,MA0025.1;0.691084,MA0027.1;1.2534,MA0028.1;0.00245755,MA0029.1;0.0802336,MA0030.1;0.212442,MA0031.1;0.861448,MA0038.1;0.877003,MA0040.1;2.22445,MA0041.1;0.880609,MA0042.1;0.245766,MA0043.1;0.197542,MA0046.1;0.614573,MA0048.1;0.201078,MA0050.1;0.796144,MA0051.1;0.46901,MA0052.1;0.135267,MA0055.1;0.163807,MA0056.1;0,MA0057.1;0.000229736,MA0058.1;0.0124434,MA0059.1;0.0655186,MA0060.1;0.00388665,MA0061.1;0.0109223,MA0063.1;0,MA0066.1;0.598128,MA0067.1;0.15781,MA0068.1;0.0207406,MA0069.1;0.135517,MA0070.1;0.8823,MA0071.1;0.182281,MA0072.1;1.23643,MA0073.1;0,MA0074.1;0.191933,MA0076.1;0.0065091,MA0077.1;0.262717,MA0078.1;0.00243335,MA0081.1;0.0105071,MA0083.1;0.0532146,MA0084.1;0.976498,MA0087.1;0.160118,MA0088.1;0.00196395,MA0089.1;0,MA0090.1;0.132952,MA0091.1;2.98564,MA0092.1;0.598233,MA0093.1;0.00792638,MA0095.1;0,MA0098.1;0,MA0100.1;1.07302,MA0101.1;0.0192571,MA0103.1;2.18359,MA0105.1;0.0092573,MA0106.1;0.241241,MA0107.1;0.0108955,MA0108.2;2.0307,MA0109.1;0,MA0111.1;0.158118,MA0113.1;1.2797,MA0114.1;0.0892649,MA0115.1;0.0542926,MA0116.1;0.0406616,MA0117.1;0.388877,MA0119.1;0.200478,MA0122.1;0.0506202,MA0124.1;0.13046,MA0125.1;0.0967451,MA0130.1;0,MA0131.1;0.00545487,MA0132.1;0,MA0133.1;0,MA0135.1;0.500276,MA0136.1;0.023299,MA0139.1;0.00937969,MA0140.1;0.284461,MA0141.1;1.65205,MA0142.1;1.1386,MA0143.1;0.561936,MA0144.1;0.849043,MA0145.1;0.977605,MA0146.1;0.000948144,MA0147.1;3.01636e-05,MA0148.1;0.676883,MA0149.1;0.000746534,MA0062.2;0.000777294,MA0035.2;0.446124,MA0039.2;5.20737e-15,MA0138.2;1.78224,MA0002.2;0.049961,MA0137.2;0.0373254,MA0104.2;7.46926e-06,MA0047.2;0.637419,MA0112.2;0.413722,MA0065.2;0.0104441,MA0150.1;0.526091,MA0151.1;0,MA0152.1;0.637837,MA0153.1;0.248069,MA0154.1;0.144961,MA0155.1;0.445362,MA0156.1;0.030974,MA0157.1;0.998608,MA0158.1;0,MA0159.1;0.0211646,MA0160.1;1.13533,MA0161.1;0,MA0162.1;4.21334e-11,MA0163.1;5.29187e-08,MA0164.1;0.00622955,MA0080.2;0.0111344,MA0018.2;1.05186,MA0099.2;1.37122,MA0079.2;0,MA0102.2;0.414497,MA0258.1;0.828177,MA0259.1;1.82151e-05,MA0442.1;0}}

Latest revision as of 14:39, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:117549570..117549587,+p@chr10:117549570..117549587
+
Mm9::chr10:12780191..12780206,-p@chr10:12780191..12780206
-
Mm9::chr10:12780231..12780238,-p@chr10:12780231..12780238
-
Mm9::chr10:12780335..12780344,+p12@Plagl1
Mm9::chr10:12780505..12780529,+p10@Plagl1
Mm9::chr10:55944786..55944790,+p@chr10:55944786..55944790
+
Mm9::chr11:106161617..106161686,-p@chr11:106161617..106161686
-
Mm9::chr11:106161619..106161650,+p@chr11:106161619..106161650
+
Mm9::chr11:106161652..106161682,+p@chr11:106161652..106161682
+
Mm9::chr11:106161688..106161710,-p@chr11:106161688..106161710
-
Mm9::chr11:106161701..106161704,+p@chr11:106161701..106161704
+
Mm9::chr11:106161714..106161723,-p@chr11:106161714..106161723
-
Mm9::chr11:106161784..106161839,+p@chr11:106161784..106161839
+
Mm9::chr11:106161787..106161792,-p@chr11:106161787..106161792
-
Mm9::chr11:106161814..106161832,-p@chr11:106161814..106161832
-
Mm9::chr11:106161842..106161880,-p@chr11:106161842..106161880
-
Mm9::chr11:106162089..106162093,+p@chr11:106162089..106162093
+
Mm9::chr11:106162094..106162117,+p@chr11:106162094..106162117
+
Mm9::chr11:106162124..106162125,-p@chr11:106162124..106162125
-
Mm9::chr11:106162129..106162134,-p@chr11:106162129..106162134
-
Mm9::chr11:106162136..106162156,-p@chr11:106162136..106162156
-
Mm9::chr11:106162158..106162204,-p@chr11:106162158..106162204
-
Mm9::chr11:106162161..106162168,+p@chr11:106162161..106162168
+
Mm9::chr11:106162210..106162243,-p@chr11:106162210..106162243
-
Mm9::chr11:106162483..106162501,+p@chr11:106162483..106162501
+
Mm9::chr11:106162491..106162507,-p@chr11:106162491..106162507
-
Mm9::chr11:106162514..106162530,-p@chr11:106162514..106162530
-
Mm9::chr11:106162697..106162723,+p@chr11:106162697..106162723
+
Mm9::chr11:106162749..106162774,-p@chr11:106162749..106162774
-
Mm9::chr11:106162784..106162791,+p@chr11:106162784..106162791
+
Mm9::chr11:106162842..106162853,-p@chr11:106162842..106162853
-
Mm9::chr11:106162861..106162875,-p@chr11:106162861..106162875
-
Mm9::chr11:106163115..106163130,-p1@Gh
Mm9::chr11:22679310..22679315,-p@chr11:22679310..22679315
-
Mm9::chr11:60289788..60289803,+p@chr11:60289788..60289803
+
Mm9::chr11:65874808..65874817,-p@chr11:65874808..65874817
-
Mm9::chr11:77693081..77693097,+p@chr11:77693081..77693097
+
Mm9::chr12:110853720..110853736,-p@chr12:110853720..110853736
-
Mm9::chr12:12857520..12857529,-p@chr12:12857520..12857529
-
Mm9::chr12:30215972..30216008,-p1@uc007ngc.1
Mm9::chr12:32555447..32555451,+p@chr12:32555447..32555451
+
Mm9::chr12:3954943..3954957,+p1@Pomc
Mm9::chr12:59103731..59103754,+p@chr12:59103731..59103754
+
Mm9::chr12:74750260..74750280,+p@chr12:74750260..74750280
+
Mm9::chr13:27149440..27149453,+p1@Prl
Mm9::chr13:27149470..27149480,+p2@Prl
Mm9::chr13:27151251..27151260,+p@chr13:27151251..27151260
+
Mm9::chr13:27151301..27151308,+p@chr13:27151301..27151308
+
Mm9::chr13:27151367..27151376,+p@chr13:27151367..27151376
+
Mm9::chr13:27153396..27153407,+p@chr13:27153396..27153407
+
Mm9::chr13:27156213..27156225,+p@chr13:27156213..27156225
+
Mm9::chr13:27157011..27157017,+p@chr13:27157011..27157017
+
Mm9::chr13:55014587..55014588,+p3@ENSMUST00000154615
Mm9::chr13:55014590..55014601,+p1@ENSMUST00000154615
Mm9::chr13:55014610..55014611,+p4@ENSMUST00000154615
Mm9::chr13:99870653..99870674,+p1@ENSMUST00000099271
p1@uc007rpk.1
Mm9::chr14:37587682..37587687,-p@chr14:37587682..37587687
-
Mm9::chr15:30934527..30934553,+p13@Ctnnd2
Mm9::chr15:73190865..73190881,-p@chr15:73190865..73190881
-
Mm9::chr15:92915843..92915850,-p@chr15:92915843..92915850
-
Mm9::chr15:97600620..97600631,-p@chr15:97600620..97600631
-
Mm9::chr15:97600641..97600663,-p@chr15:97600641..97600663
-
Mm9::chr15:99468218..99468227,-p4@Racgap1
Mm9::chr15:99468236..99468247,-p3@Racgap1
Mm9::chr15:99522649..99522660,+p3@Accn2
Mm9::chr16:23257005..23257026,+p@chr16:23257005..23257026
+
Mm9::chr16:65523906..65523918,+p@chr16:65523906..65523918
+
Mm9::chr16:65534318..65534330,+p@chr16:65534318..65534330
+
Mm9::chr16:65534337..65534346,+p@chr16:65534337..65534346
+
Mm9::chr16:72083353..72083356,+p@chr16:72083353..72083356
+
Mm9::chr16:86358436..86358442,-p@chr16:86358436..86358442
-
Mm9::chr16:9150948..9150952,-p@chr16:9150948..9150952
-
Mm9::chr17:25940337..25940350,+p@chr17:25940337..25940350
+
Mm9::chr17:34056001..34056008,+p22@Tapbp
Mm9::chr17:52742025..52742042,+p5@Kcnh8
Mm9::chr17:52896416..52896418,+p@chr17:52896416..52896418
+
Mm9::chr18:60795823..60795828,+p@chr18:60795823..60795828
+
Mm9::chr18:65857907..65857931,+p1@5330437I02Rik
Mm9::chr19:10478471..10478486,+p@chr19:10478471..10478486
+
Mm9::chr19:53927404..53927413,+p@chr19:53927404..53927413
+
Mm9::chr1:157077259..157077273,-p@chr1:157077259..157077273
-
Mm9::chr1:157077321..157077330,-p@chr1:157077321..157077330
-
Mm9::chr1:160888300..160888311,-p1@Pappa2
Mm9::chr1:160961090..160961100,-p@chr1:160961090..160961100
-
Mm9::chr1:190858662..190858674,+p@chr1:190858662..190858674
+
Mm9::chr1:194660751..194660752,-p1@ENSMUST00000057543
Mm9::chr1:75435802..75435813,+p@chr1:75435802..75435813
+
Mm9::chr1:95114042..95114044,+p@chr1:95114042..95114044
+
Mm9::chr2:106897477..106897480,-p@chr2:106897477..106897480
-
Mm9::chr2:106899136..106899137,-p@chr2:106899136..106899137
-
Mm9::chr2:106899803..106899815,-p1@Fshb
Mm9::chr2:157387211..157387221,+p@chr2:157387211..157387221
+
Mm9::chr2:174675488..174675494,-p@chr2:174675488..174675494
-
Mm9::chr2:174678719..174678724,-p5@ENSMUST00000149377
Mm9::chr2:174678745..174678752,-p3@ENSMUST00000149377
Mm9::chr2:174678782..174678802,-p1@ENSMUST00000149377
Mm9::chr2:174678804..174678811,-p4@ENSMUST00000149377
Mm9::chr2:174678856..174678860,-p2@ENSMUST00000149377
Mm9::chr2:178362498..178362505,-p@chr2:178362498..178362505
-
Mm9::chr2:178362512..178362530,-p@chr2:178362512..178362530
-
Mm9::chr2:30510391..30510400,+p@chr2:30510391..30510400
+
Mm9::chr3:58614474..58614492,-p@chr3:58614474..58614492
-
Mm9::chr3:84841876..84841878,-p@chr3:84841876..84841878
-
Mm9::chr3:95838168..95838175,-p@chr3:95838168..95838175
-
Mm9::chr4:150943126..150943160,-p@chr4:150943126..150943160
-
Mm9::chr4:34840978..34840987,+p3@Cga
Mm9::chr4:34841000..34841008,+p4@Cga
Mm9::chr4:34841021..34841036,+p1@Cga
Mm9::chr4:34841043..34841065,+p2@Cga
Mm9::chr4:34852398..34852407,+p@chr4:34852398..34852407
+
Mm9::chr4:68248939..68248946,+p@chr4:68248939..68248946
+
Mm9::chr4:94143858..94143898,-p1@ENSMUST00000127678
p1@ENSMUST00000133884
p1@uc008trz.1
Mm9::chr4:98103495..98103511,+p12@Inadl
Mm9::chr5:118487983..118487997,+p@chr5:118487983..118487997
+
Mm9::chr5:118488029..118488037,+p@chr5:118488029..118488037
+
Mm9::chr5:129410127..129410141,-p@chr5:129410127..129410141
-
Mm9::chr5:20207947..20208032,+p3@Magi2
Mm9::chr5:37482313..37482324,+p@chr5:37482313..37482324
+
Mm9::chr5:86626872..86626881,-p3@Gnrhr
Mm9::chr5:86626906..86626920,-p1@Gnrhr
Mm9::chr5:86626950..86626960,-p2@Gnrhr
Mm9::chr6:112643587..112643598,-p@chr6:112643587..112643598
-
Mm9::chr7:112717893..112717907,+p@chr7:112717893..112717907
+
Mm9::chr7:136975437..136975441,+p@chr7:136975437..136975441
+
Mm9::chr7:52676276..52676284,+p3@Lhb
Mm9::chr7:52676309..52676316,+p2@Lhb
Mm9::chr7:76005128..76005135,+p@chr7:76005128..76005135
+
Mm9::chr7:86030505..86030537,+p@chr7:86030505..86030537
+
Mm9::chr8:4248188..4248219,+p2@Gm14378
Mm9::chr8:4248223..4248241,+p3@Gm14378
Mm9::chr8:4248248..4248267,+p1@Gm14378
Mm9::chr8:4249457..4249459,+p@chr8:4249457..4249459
+
Mm9::chr8:4250307..4250319,+p4@Gm14378
Mm9::chr8:94583590..94583594,-p@chr8:94583590..94583594
-
Mm9::chr8:9702589..9702592,-p@chr8:9702589..9702592
-
Mm9::chr9:112407509..112407516,+p@chr9:112407509..112407516
+
Mm9::chr9:44754012..44754020,-p@chr9:44754012..44754020
-
Mm9::chr9:50693593..50693603,+p@chr9:50693593..50693603
+
Mm9::chr9:75221009..75221059,-p@chr9:75221009..75221059
-
Mm9::chr9:7556270..7556278,-p@chr9:7556270..7556278
-
Mm9::chr9:7572741..7572752,-p@chr9:7572741..7572752
-
Mm9::chr9:7593439..7593443,-p@chr9:7593439..7593443
-
Mm9::chr9:7604109..7604118,-p@chr9:7604109..7604118
-
Mm9::chr9:7604127..7604130,-p@chr9:7604127..7604130
-
Mm9::chr9:7604145..7604167,-p@chr9:7604145..7604167
-
Mm9::chr9:77247115..77247160,-p1@5730403I07Rik
Mm9::chrX:135891273..135891283,-p4@C330013F16Rik
Mm9::chrX:18796273..18796278,-p@chrX:18796273..18796278
-
Mm9::chrX:47151047..47151077,-p3@Igsf1
Mm9::chrX:54307057..54307085,+p2@Htatsf1
Mm9::chrX:91705113..91705115,-p@chrX:91705113..91705115
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0005179hormone activity1.55673854052896e-06
GO:0005102receptor binding0.000667694344920263
GO:0030141secretory granule0.00139708723143257
GO:0040018positive regulation of multicellular organism growth0.0265181819214404
GO:0045927positive regulation of growth0.0297602743015208
GO:0005126hematopoietin/interferon-class (D200-domain) cytokine receptor binding0.0340312509722374
GO:0032962positive regulation of inositol trisphosphate biosynthetic process0.0340312509722374
GO:0032958inositol phosphate biosynthetic process0.0340312509722374
GO:0032960regulation of inositol trisphosphate biosynthetic process0.0340312509722374
GO:0032959inositol trisphosphate biosynthetic process0.0340312509722374
GO:0004968gonadotropin-releasing hormone receptor activity0.0340312509722374
GO:0016023cytoplasmic membrane-bound vesicle0.0340312509722374
GO:0031988membrane-bound vesicle0.0340312509722374
GO:0007612learning0.0340312509722374
GO:0019717synaptosome0.0340312509722374
GO:0040014regulation of multicellular organism growth0.0340312509722374
GO:0008283cell proliferation0.0340312509722374
GO:0006021inositol biosynthetic process0.0340312509722374
GO:0005148prolactin receptor binding0.0340312509722374
GO:0043647inositol phosphate metabolic process0.0340312509722374
GO:0032957inositol trisphosphate metabolic process0.0340312509722374
GO:0005131growth hormone receptor binding0.0340312509722374
GO:0060133somatotropin secreting cell development0.0340312509722374
GO:0035264multicellular organism growth0.0340312509722374
GO:0007611learning and/or memory0.0404508747914723
GO:0060126somatotropin secreting cell differentiation0.0404508747914723
GO:0007262STAT protein nuclear translocation0.0404508747914723
GO:0001101response to acid0.0404508747914723
GO:0033143regulation of steroid hormone receptor signaling pathway0.0404508747914723
GO:0043567regulation of insulin-like growth factor receptor signaling pathway0.0404508747914723
GO:0060011Sertoli cell proliferation0.0466662557784434
GO:0045913positive regulation of carbohydrate metabolic process0.0466662557784434
GO:0050811GABA receptor binding0.0466662557784434
GO:0043255regulation of carbohydrate biosynthetic process0.0466662557784434
GO:0031410cytoplasmic vesicle0.0466662557784434
GO:0005515protein binding0.0466662557784434
GO:0031982vesicle0.0474248118340476



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
pituitary gland6.68e-448
gland of diencephalon6.68e-448
neuroendocrine gland6.68e-448
diencephalon2.37e-3510
future diencephalon2.37e-3510
regional part of forebrain9.26e-1039
forebrain9.26e-1039
future forebrain9.26e-1039
anterior neural tube1.55e-0940
regional part of brain2.15e-0846
brain3.12e-0847
future brain3.12e-0847
pre-chordal neural plate6.29e-0849
neural tube1.63e-0752
neural rod1.63e-0752
future spinal cord1.63e-0752
neural keel1.63e-0752
regional part of nervous system2.91e-0754


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.11.4706e-14
MA0004.10.0119637
MA0006.10.000562255
MA0007.10.699403
MA0009.11.22521
MA0014.12.3556e-11
MA0017.10.00134063
MA0019.10.360704
MA0024.10.230852
MA0025.10.691084
MA0027.11.2534
MA0028.10.00245755
MA0029.10.0802336
MA0030.10.212442
MA0031.10.861448
MA0038.10.877003
MA0040.12.22445
MA0041.10.880609
MA0042.10.245766
MA0043.10.197542
MA0046.10.614573
MA0048.10.201078
MA0050.10.796144
MA0051.10.46901
MA0052.10.135267
MA0055.10.163807
MA0056.10
MA0057.10.000229736
MA0058.10.0124434
MA0059.10.0655186
MA0060.10.00388665
MA0061.10.0109223
MA0063.10
MA0066.10.598128
MA0067.10.15781
MA0068.10.0207406
MA0069.10.135517
MA0070.10.8823
MA0071.10.182281
MA0072.11.23643
MA0073.10
MA0074.10.191933
MA0076.10.0065091
MA0077.10.262717
MA0078.10.00243335
MA0081.10.0105071
MA0083.10.0532146
MA0084.10.976498
MA0087.10.160118
MA0088.10.00196395
MA0089.10
MA0090.10.132952
MA0091.12.98564
MA0092.10.598233
MA0093.10.00792638
MA0095.10
MA0098.10
MA0100.11.07302
MA0101.10.0192571
MA0103.12.18359
MA0105.10.0092573
MA0106.10.241241
MA0107.10.0108955
MA0108.22.0307
MA0109.10
MA0111.10.158118
MA0113.11.2797
MA0114.10.0892649
MA0115.10.0542926
MA0116.10.0406616
MA0117.10.388877
MA0119.10.200478
MA0122.10.0506202
MA0124.10.13046
MA0125.10.0967451
MA0130.10
MA0131.10.00545487
MA0132.10
MA0133.10
MA0135.10.500276
MA0136.10.023299
MA0139.10.00937969
MA0140.10.284461
MA0141.11.65205
MA0142.11.1386
MA0143.10.561936
MA0144.10.849043
MA0145.10.977605
MA0146.10.000948144
MA0147.13.01636e-05
MA0148.10.676883
MA0149.10.000746534
MA0062.20.000777294
MA0035.20.446124
MA0039.25.20737e-15
MA0138.21.78224
MA0002.20.049961
MA0137.20.0373254
MA0104.27.46926e-06
MA0047.20.637419
MA0112.20.413722
MA0065.20.0104441
MA0150.10.526091
MA0151.10
MA0152.10.637837
MA0153.10.248069
MA0154.10.144961
MA0155.10.445362
MA0156.10.030974
MA0157.10.998608
MA0158.10
MA0159.10.0211646
MA0160.11.13533
MA0161.10
MA0162.14.21334e-11
MA0163.15.29187e-08
MA0164.10.00622955
MA0080.20.0111344
MA0018.21.05186
MA0099.21.37122
MA0079.20
MA0102.20.414497
MA0258.10.828177
MA0259.11.82151e-05
MA0442.10
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