FF:1286-20C6: Difference between revisions

Latest revision as of 18:46, 4 June 2020

Name:	stomach, embryo E18
Species:	Mouse (Mus musculus)
Library ID:	CNhs10999
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	stomach
dev stage	18 days embryo
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005926

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10999		CAGE		DRX009095		DRR009969

Accession ID Mm9

Library id		BAM		CTSS
CNhs10999		DRZ001394		DRZ002777

Accession ID Mm10

Library id		BAM		CTSS
CNhs10999		DRZ012744		DRZ014127

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs10999

0	0
1	0
10	0
100	0
1000	0.122
1001	0.0822
1002	0.428
1003	0.0939
1004	0
1005	0.197
1006	-0.0659
1007	-0.0227
1008	0
1009	0.121
101	0.00106
1010	0
1011	0
1012	0
1013	0.0443
1014	0.538
1015	-0.00708
1016	0.0847
1017	0.852
1018	0.631
1019	0
102	0
1020	0
1021	0
1022	0.0154
1023	0
1024	0.0565
1025	0.757
1026	0.0563
1027	0
1028	0
1029	0.304
103	0.273
1030	0
1031	0.349
1032	0.219
1033	0
1034	0
1035	0
1036	0.0466
1037	0
1038	0.0126
1039	-0.0106
104	0
1040	0.0979
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10999

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.415
MA0003.1	MA0003.1	0.285
MA0004.1	MA0004.1	0.304
MA0006.1	MA0006.1	0.0852
MA0007.1	MA0007.1	0.778
MA0009.1	MA0009.1	0.0502
MA0014.1	MA0014.1	0.757
MA0017.1	MA0017.1	0.063
MA0018.2	MA0018.2	2.66634e-5
MA0019.1	MA0019.1	0.623
MA0024.1	MA0024.1	0.23
MA0025.1	MA0025.1	9.49205e-4
MA0027.1	MA0027.1	0.0179
MA0028.1	MA0028.1	0.00178
MA0029.1	MA0029.1	0.915
MA0030.1	MA0030.1	0.289
MA0031.1	MA0031.1	0.718
MA0035.2	MA0035.2	0.168
MA0038.1	MA0038.1	0.589
MA0039.2	MA0039.2	0.00315
MA0040.1	MA0040.1	0.587
MA0041.1	MA0041.1	0.127
MA0042.1	MA0042.1	0.193
MA0043.1	MA0043.1	3.14172e-4
MA0046.1	MA0046.1	4.18051e-24
MA0047.2	MA0047.2	1.65062e-6
MA0048.1	MA0048.1	0.585
MA0050.1	MA0050.1	0.467
MA0051.1	MA0051.1	0.033
MA0052.1	MA0052.1	0.00366
MA0055.1	MA0055.1	0.373
MA0057.1	MA0057.1	0.0668
MA0058.1	MA0058.1	0.114
MA0059.1	MA0059.1	0.444
MA0060.1	MA0060.1	0.0846
MA0061.1	MA0061.1	0.829
MA0062.2	MA0062.2	2.16164e-8
MA0065.2	MA0065.2	0.086
MA0066.1	MA0066.1	0.166
MA0067.1	MA0067.1	0.159
MA0068.1	MA0068.1	0.0671
MA0069.1	MA0069.1	0.0434
MA0070.1	MA0070.1	0.494
MA0071.1	MA0071.1	0.0529
MA0072.1	MA0072.1	0.323
MA0073.1	MA0073.1	0.606
MA0074.1	MA0074.1	0.963
MA0076.1	MA0076.1	1.61676e-4
MA0077.1	MA0077.1	0.306
MA0078.1	MA0078.1	0.233
MA0079.2	MA0079.2	0.475
MA0080.2	MA0080.2	0.0317
MA0081.1	MA0081.1	0.00121
MA0083.1	MA0083.1	1.50976e-5
MA0084.1	MA0084.1	0.945
MA0087.1	MA0087.1	0.298
MA0088.1	MA0088.1	0.178
MA0090.1	MA0090.1	0.0801
MA0091.1	MA0091.1	0.679
MA0092.1	MA0092.1	0.213
MA0093.1	MA0093.1	0.261
MA0099.2	MA0099.2	2.81008e-5
MA0100.1	MA0100.1	0.00702
MA0101.1	MA0101.1	0.343
MA0102.2	MA0102.2	0.769
MA0103.1	MA0103.1	5.42171e-5
MA0104.2	MA0104.2	0.181
MA0105.1	MA0105.1	0.0674
MA0106.1	MA0106.1	0.0927
MA0107.1	MA0107.1	0.379
MA0108.2	MA0108.2	1.44913e-7
MA0111.1	MA0111.1	0.855
MA0112.2	MA0112.2	0.00455
MA0113.1	MA0113.1	0.509
MA0114.1	MA0114.1	0.00241
MA0115.1	MA0115.1	0.976
MA0116.1	MA0116.1	0.0415
MA0117.1	MA0117.1	0.194
MA0119.1	MA0119.1	0.0986
MA0122.1	MA0122.1	0.182
MA0124.1	MA0124.1	0.997
MA0125.1	MA0125.1	0.576
MA0131.1	MA0131.1	0.238
MA0135.1	MA0135.1	0.355
MA0136.1	MA0136.1	7.20797e-5
MA0137.2	MA0137.2	0.737
MA0138.2	MA0138.2	0.745
MA0139.1	MA0139.1	0.25
MA0140.1	MA0140.1	0.318
MA0141.1	MA0141.1	0.361
MA0142.1	MA0142.1	0.0504
MA0143.1	MA0143.1	0.138
MA0144.1	MA0144.1	0.185
MA0145.1	MA0145.1	0.00923
MA0146.1	MA0146.1	0.655
MA0147.1	MA0147.1	0.153
MA0148.1	MA0148.1	2.06192e-7
MA0149.1	MA0149.1	0.491
MA0150.1	MA0150.1	0.602
MA0152.1	MA0152.1	0.728
MA0153.1	MA0153.1	1.20894e-16
MA0154.1	MA0154.1	0.00876
MA0155.1	MA0155.1	0.275
MA0156.1	MA0156.1	0.0023
MA0157.1	MA0157.1	0.321
MA0159.1	MA0159.1	0.89
MA0160.1	MA0160.1	0.194
MA0162.1	MA0162.1	0.255
MA0163.1	MA0163.1	0.0139
MA0164.1	MA0164.1	0.834
MA0258.1	MA0258.1	0.17
MA0259.1	MA0259.1	0.177

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10999

Novel motif	Logo	P-value
1	1	0.532
10	10	0.439
100	100	0.604
101	101	0.717
102	102	0.789
103	103	0.0414
104	104	0.868
105	105	0.779
106	106	0.00757
107	107	0.0151
108	108	0.637
109	109	0.199
11	11	0.657
110	110	0.479
111	111	0.505
112	112	0.161
113	113	0.517
114	114	0.995
115	115	0.931
116	116	0.167
117	117	0.617
118	118	0.366
119	119	0.159
12	12	0.83
120	120	0.523
121	121	0.454
122	122	0.341
123	123	0.629
124	124	0.768
125	125	0.876
126	126	0.117
127	127	0.569
128	128	0.0188
129	129	0.945
13	13	0.0231
130	130	0.461
131	131	0.845
132	132	0.322
133	133	0.77
134	134	0.402
135	135	0.998
136	136	0.807
137	137	0.887
138	138	0.00633
139	139	0.49
14	14	0.768
140	140	0.045
141	141	0.369
142	142	0.677
143	143	0.0809
144	144	0.207
145	145	0.0916
146	146	0.346
147	147	0.787
148	148	0.559
149	149	0.213
15	15	0.825
150	150	0.456
151	151	0.773
152	152	0.0833
153	153	0.563
154	154	0.868
155	155	0.946
156	156	0.00513
157	157	0.275
158	158	0.807
159	159	0.151
160	160	0.0384
161	161	0.22
162	162	0.256
163	163	0.978
164	164	0.519
165	165	0.784
166	166	0.225
167	167	0.29
168	168	0.0739
169	169	0.025
17	17	0.0374
18	18	0.685
19	19	0.0316
2	2	0.244
20	20	0.24
21	21	0.274
22	22	0.215
23	23	0.134
24	24	0.615
25	25	0.358
26	26	0.0161
27	27	0.693
28	28	0.879
29	29	0.921
3	3	0.57
30	30	0.103
31	31	0.902
32	32	0.0412
33	33	0.727
34	34	0.72
35	35	0.697
36	36	0.371
37	37	0.193
38	38	0.69
39	39	0.156
4	4	0.198
40	40	0.765
41	41	0.379
42	42	0.659
43	43	0.216
44	44	0.774
45	45	0.266
46	46	0.299
47	47	0.531
48	48	0.762
49	49	0.457
5	5	0.517
50	50	0.526
51	51	0.421
52	52	0.0431
53	53	0.275
54	54	0.21
55	55	0.961
56	56	0.377
57	57	0.387
58	58	0.626
59	59	0.226
6	6	0.17
60	60	0.0538
61	61	0.438
62	62	0.759
63	63	0.408
64	64	0.873
65	65	0.365
66	66	0.528
67	67	0.901
68	68	0.0774
69	69	0.319
7	7	0.246
70	70	0.875
71	71	0.0785
72	72	0.572
73	73	0.306
74	74	0.517
75	75	0.715
76	76	0.121
77	77	0.00339
78	78	0.245
79	79	0.915
8	8	0.687
80	80	0.181
81	81	0.592
82	82	0.285
83	83	0.988
84	84	0.897
85	85	0.17
86	86	0.556
87	87	0.484
88	88	0.145
89	89	0.352
9	9	0.265
90	90	0.846
91	91	0.671
92	92	0.113
93	93	0.266
94	94	0.522
95	95	0.656
96	96	0.43
97	97	0.266
98	98	0.871
99	99	0.0344

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10999

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011514 mouse stomach- embryo E18 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000945 (stomach)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000302 (mouse embryonic day 18 sample)
0011514 (mouse stomach- embryo E18 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005926
+|accession_numbers=CAGE;DRX009095;DRR009969;DRZ001394;DRZ002777;DRZ012744;DRZ014127
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr5:77543897..77543911,-!p2@Hopx!2.10!233.87!Hopx;;chr13:55932591..55932622,-!p1@Pitx1!1.99!113.77!Pitx1;;chr4:135129538..135129558,-!p1@Grhl3!1.85!102.85!Grhl3;;chr5:77543935..77543947,-!p4@Hopx!1.81!63.76!Hopx;;chr1:137155026..137155042,-!p1@Elf3!1.68!261.82!Elf3;;chr2:103143336..103143367,-!p1@Ehf!1.65!69.44!Ehf;;chr10:22539932..22539956,-!p1@Tcf21!1.64!110.93!Tcf21;;chr16:25801993..25802014,+!p1@Trp63!1.62!40.62!Trp63;;chr13:48758276..48758291,+!p1@Barx1!1.55!34.72!Barx1;;chr8:59799772..59799789,+!p1@Hand2!1.54!94.55!Hand2;;chr11:121380640..121380655,-!p1@Zfp750!1.52!52.19!Zfp750;;chr13:31650185..31650201,+!p1@Foxq1!1.51!107.00!Foxq1;;chr2:163332558..163332596,+!p2@Hnf4a!1.49!29.92!Hnf4a;;chr17:27865882..27865901,-!p1@Spdef!1.49!29.70!Spdef;;chr8:123608252..123608268,+!p1@Foxf1a!1.44!38.87!Foxf1a;;chr12:58646974..58647003,-!p1@Foxa1!1.42!33.85!Foxa1;;chr2:103143315..103143328,-!p2@Ehf!1.39!23.80!Ehf;;chr19:5560600..5560617,-!p1@Ovol1!1.38!27.95!Ovol1;;chr13:55937467..55937516,-!p3@Pitx1!1.38!23.15!Pitx1;;chr13:55932624..55932641,-!p2@Pitx1!1.30!19.00!Pitx1;;chr13:55937432..55937460,-!p4@Pitx1!1.30!19.00!Pitx1;;chr3:3634145..3634161,+!p1@Hnf4g!1.30!19.00!Hnf4g;;chr10:88969376..88969395,-!p1@Nr1h4!1.29!18.56!Nr1h4;;chr7:19608891..19608895,-!p1@Foxa3!1.28!23.58!Foxa3;;chr14:118636214..118636235,-!p1@Sox21!1.28!21.62!Sox21;;chr16:38294860..38294924,-!p1@Nr1i2!1.25!16.81!Nr1i2;;chr3:34548909..34548927,+!p1@Sox2!1.24!27.30!Sox2;;chr13:48758358..48758415,+!p2@Barx1!1.24!16.38!Barx1;;chr13:31717548..31717596,+!p1@Foxf2!1.17!27.08!Foxf2;;chr11:121380594..121380609,-!p2@Zfp750!1.17!24.02!Zfp750;;chr14:63864056..63864102,-!p1@Gata4!1.15!22.93!Gata4;;chr2:103264245..103264268,+!p2@Elf5!1.15!13.10!Elf5;;chr1:189821714..189821761,+!p1@Esrrg!1.14!23.80!Esrrg;;chr5:144951153..144951203,+!p1@Bhlha15!1.14!18.78!Bhlha15;;chr2:164228702..164228719,+!p1@Rbpjl!1.11!12.01!Rbpjl;;chr14:99697871..99697934,+!p1@Klf5!1.10!226.44!Klf5;;chr7:17647736..17647772,-!p1@Hif3a!1.10!41.05!Hif3a;;chr11:121380611..121380625,-!p3@Zfp750!1.09!13.98!Zfp750;;chr10:80555320..80555378,-!p1@Creb3l3!1.09!13.10!Creb3l3;;chr10:12810631..12810649,+!p1@Plagl1!1.08!289.99!Plagl1;;chr15:102865088..102865107,+!p1@Hoxc4!1.07!14.41!Hoxc4;;chr9:31720843..31720888,-!p1@Barx2!1.06!11.57!Barx2;;chr3:90046995..90047031,-!p2@Creb3l4!1.05!12.88!Creb3l4;;chr12:57796615..57796687,+!p1@Pax9!1.03!9.83!Pax9;;chr13:117099847..117099907,-!p1@Isl1!1.02!17.91!Isl1;;chr3:34548946..34548972,+!p2@Sox2!1.02!10.48!Sox2;;chr2:180069370..180069409,-!p1@Gata5!0.98!10.04!Gata5;;chr2:19367259..19367278,+!p1@Ptf1a!0.97!8.30!Ptf1a;;chr13:72766250..72766273,+!p1@Irx2!0.96!12.67!Irx2;;chr3:3508024..3508069,+!p2@Hnf4g!0.96!8.08!Hnf4g;;chr15:102865131..102865151,+!p2@Hoxc4!0.95!8.95!Hoxc4;;chr2:103264213..103264233,+!p1@Elf5!0.95!7.86!Elf5;;chr13:40829137..40829205,-!p1@Tfap2a!0.93!8.52!Tfap2a;;chr2:172375081..172375105,+!p1@Tfap2c!0.93!7.42!Tfap2c;;chr4:87452180..87452196,-!p3@Mllt3!0.90!13.98!Mllt3;;chr14:118636238..118636257,-!p2@Sox21!0.90!6.99!Sox21;;chr4:55545337..55545357,-!p1@Klf4!0.89!103.72!Klf4;;chr13:31650026..31650045,+!p2@Foxq1!0.89!11.79!Foxq1;;chr12:25257265..25257294,+!p2@Grhl1!0.89!6.77!Grhl1;;chr18:76219118..76219155,+!p1@Zbtb7c!0.88!12.01!Zbtb7c;;chr2:103252231..103252256,+!p4@Elf5!0.88!6.55!Elf5;;chr11:96880072..96880079,+!p1@Sp6!0.88!6.55!Sp6;;chr3:30408603..30408668,-!p1@Mecom!0.87!15.50!Mecom;;chr10:44178521..44178557,-!p1@Prdm1!0.87!11.79!Prdm1;;chr11:94981424..94981439,+!p1@Dlx3!0.87!7.42!Dlx3;;chr11:69468531..69468557,+!p1@Sox15!0.87!6.33!Sox15;;chr3:29911808..29911833,-!p8@Mecom!0.87!6.33!Mecom;;chr14:118635860..118635885,-!p3@Sox21!0.87!6.33!Sox21;;chr3:30408674..30408716,-!p2@Mecom!0.85!10.26!Mecom;;chr4:46356509..46356527,+!p1@Foxe1!0.84!5.90!Foxe1;;chr14:63890491..63890516,-!p2@Gata4!0.84!5.90!Gata4;;chr2:147871627..147871641,-!p1@Foxa2!0.84!5.90!Foxa2;;chr10:126778916..126778974,-!p1@Gli1!0.83!13.54!Gli1;;chr7:6649134..6649167,-!p1@Zim1!0.82!32.75!Zim1;;chr7:108966820..108966835,+!p1@Phox2a!0.82!5.68!Phox2a;;chr5:148118639..148118715,-!p1@Cdx2!0.81!5.46!Cdx2;;chr9:31720746..31720762,-!p4@Barx2!0.81!5.46!Barx2;;chr17:86087592..86087615,-!p1@Six2!0.80!5.24!Six2;;chr6:86619104..86619119,-!p1@Mxd1!0.77!43.67!Mxd1;;chr1:170361991..170362015,-!p6@Pbx1!0.77!11.57!Pbx1;;chr18:64499674..64499696,+!p1@Onecut2!0.77!8.95!Onecut2;;chr6:14851287..14851342,+!p1@Foxp2!0.76!17.03!Foxp2;;chr6:115311030..115311065,+!p4@Pparg!0.75!6.99!Pparg;;chr19:5560570..5560582,-!p2@Ovol1!0.75!4.59!Ovol1;;chr11:121381087..121381108,-!p4@Zfp750!0.75!4.59!Zfp750;;chr2:133377954..133377973,+!p1@Bmp2!0.74!15.72!Bmp2;;chr6:52163319..52163342,-!p1@Hoxa3!0.74!6.77!Hoxa3;;chr3:30408384..30408431,-!p4@Mecom!0.74!5.90!Mecom;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.73!13.54!Tfcp2l1;;chr6:14851440..14851497,+!p2@Foxp2!0.73!11.57!Foxp2;;chr4:87452200..87452229,-!p2@Mllt3!0.73!10.04!Mllt3;;chr5:67490284..67490302,-!p1@Phox2b!0.73!4.37!Phox2b;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.72!18.56!Ppp1r13l;;chr6:51382677..51382783,+!p1@Nfe2l3!0.72!11.79!Nfe2l3;;chr6:52114821..52114828,-!p1@Hoxa2!0.72!6.77!Hoxa2;;chr19:10315179..10315241,-!p1@Gm98!0.71!49.13!Gm98;;chr2:77357622..77357704,-!p1@Zfp385b!0.71!12.01!Zfp385b;;chr19:43686789..43686811,+!p1@Nkx2-3!0.71!4.15!Nkx2-3;;chr15:102839948..102839975,+!p3@Hoxc6!0.71!4.15!Hoxc6;;chr15:102828658..102828678,+!p1@Hoxc6!0.71!4.15!Hoxc6;;chr1:194979315..194979359,+!p1@Irf6!0.70!27.30!Irf6;;chr13:72766279..72766296,+!p2@Irx2!0.70!6.33!Irx2;;chr18:64499706..64499721,+!p2@Onecut2!0.70!5.90!Onecut2;;chr18:11052642..11052659,+!p1@Gata6!0.69!22.27!Gata6;;chr7:123182248..123182264,-!p3@Sox6!0.69!4.80!Sox6;;chr15:102844431..102844445,+!p1@Hoxc5!0.69!3.93!Hoxc5;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.68!6.99!Hoxb2;;chr6:52154414..52154462,-!p1@Hoxa5!0.68!5.46!Hoxa5;;chr10:119913310..119913366,-!p1@Hmga2!0.67!32.75!Hmga2;;chr15:102820964..102821006,+!p1@Hoxc8!0.67!3.71!Hoxc8;;chr12:39510206..39510249,+!p3@Etv1!0.67!3.71!Etv1;;chr13:31717597..31717613,+!p2@Foxf2!0.67!3.71!Foxf2;;chr16:14705961..14705978,+!p2@Snai2!0.66!19.22!Snai2;;chr12:25257141..25257173,+!p1@Grhl1!0.66!8.08!Grhl1;;chr10:86956396..86956411,-!p1@Ascl1!0.66!5.90!Ascl1;;chr11:96153767..96153822,+!p1@Hoxb6!0.66!5.90!Hoxb6;;chr1:194979361..194979373,+!p2@Irf6!0.66!5.02!Irf6;;chr4:135129447..135129467,-!p2@Grhl3!0.65!4.37!Grhl3;;chr2:103264277..103264292,+!p3@Elf5!0.65!3.49!Elf5;;chr17:28409136..28409150,+!p3@Ppard!0.65!3.49!Ppard;;chr12:25257176..25257190,+!p3@Grhl1!0.64!3.93!Grhl1;;chr11:18918917..18918944,-!p1@Meis1!0.63!49.35!Meis1;;chr9:71743854..71743909,-!p1@Tcf12!0.63!30.79!Tcf12;;chr4:148275237..148275311,+!p2@Casz1!0.63!15.50!Casz1;;chr10:61595830..61595846,+!p1@Neurog3!0.63!3.28!Neurog3;;chr15:102865048..102865073,+!p3@Hoxc4!0.62!4.15!Hoxc4;;chr15:37162834..37162849,+!p2@Grhl2!0.62!3.93!Grhl2;;chr11:96143666..96143725,+!p1@Hoxb8!0.62!3.71!Hoxb8;;chr4:124805061..124805087,-!p1@Zc3h12a!0.61!10.92!Zc3h12a;;chr4:148178559..148178603,+!p1@Casz1!0.61!10.04!Casz1;;chr15:102087880..102087927,-!p2@Rarg!0.61!8.08!Rarg;;chr6:52141694..52141715,-!p1@Hoxa4!0.61!4.15!Hoxa4;;chr8:77396591..77396639,+!p1@Isx!0.61!3.06!Isx;;chr14:63890519..63890539,-!p3@Gata4!0.61!3.06!Gata4;;chr15:37163124..37163153,+!p3@Grhl2!0.61!3.06!Grhl2;;chr12:39507680..39507715,+!p2@Etv1!0.60!6.55!Etv1;;chr8:94881733..94881790,+!p1@Irx5!0.60!6.55!Irx5;;chr11:18918959..18918976,-!p2@Meis1!0.59!47.60!Meis1;;chr10:44178493..44178520,-!p3@Prdm1!0.59!4.37!Prdm1;;chr6:15135215..15135244,+!p11@Foxp2!0.58!2.84!Foxp2;;chr13:72766234..72766243,+!p3@Irx2!0.58!2.84!Irx2;;chr15:102839976..102839989,+!p4@Hoxc6!0.58!2.84!Hoxc6;;chr15:81977802..81977828,+!p2@Srebf2!0.57!28.39!Srebf2;;chr3:128916868..128916890,+!p1@Pitx2!0.56!3.93!Pitx2;;chr11:96213434..96213452,+!p@chr11:96213434..96213452,+!0.56!3.71!Hoxb2;;chr11:83664365..83664383,+!p1@Hnf1b!0.56!2.62!Hnf1b;;chr4:148178459..148178482,+!p4@Casz1!0.56!2.62!Casz1;;chr2:147871948..147871977,-!p3@Foxa2!0.56!2.62!Foxa2;;chr13:40826961..40827001,-!p4@Tfap2a!0.56!2.62!Tfap2a;;chr13:48758431..48758443,+!p3@Barx1!0.56!2.62!Barx1;;chr9:74709695..74709722,+!p1@Onecut1!0.56!2.62!Onecut1;;chr4:154010940..154010962,-!p3@Prdm16!0.55!6.55!Prdm16;;chr6:52154386..52154407,-!p2@Hoxa5!0.55!3.49!Hoxa5;;chr14:17407549..17407575,-!p3@Rarb!0.54!4.15!Rarb;;chr14:63864337..63864381,-!p6@Gata4!0.53!2.40!Gata4;;chr14:63890545..63890560,-!p5@Gata4!0.53!2.40!Gata4;;chr13:55932739..55932756,-!p5@Pitx1!0.53!2.40!Pitx1;;chr11:78200071..78200100,-!p1@Foxn1!0.53!2.40!Foxn1;;chr11:96164821..96164865,+!p1@Hoxb5!0.53!2.40!Hoxb5;;chr1:136186574..136186592,+!p1@Myog!0.53!2.40!Myog;;chr5:42155788..42155800,-!p1@Nkx3-2!0.53!2.40!Nkx3-2;;chr5:148081686..148081715,+!p1@Pdx1!0.53!2.40!Pdx1;;chr16:14705925..14705951,+!p1@Snai2!0.52!20.53!Snai2;;chr17:32506357..32506377,-!p3@Wiz!0.52!5.68!Wiz;;chr7:38554763..38554780,-!p1@Zfp536!0.52!4.80!Zfp536;;chr12:9581262..9581282,+!p1@Osr1!0.51!35.16!Osr1;;chrX:45245679..45245702,-!p1@Smarca1!0.51!12.67!Smarca1;;chr1:120879128..120879183,-!p3@Gli2!0.51!5.02!Gli2;;chr12:34642510..34642530,+!p1@Twist1!0.50!8.52!Twist1;;chr18:11052606..11052633,+!p4@Gata6!0.50!6.55!Gata6;;chr2:115891381..115891392,-!p5@Meis2!0.50!5.02!Meis2;;chr18:76219161..76219176,+!p4@Zbtb7c!0.50!3.06!Zbtb7c;;chr12:25257114..25257131,+!p4@Grhl1!0.50!3.06!Grhl1;;chr7:38554745..38554756,-!p7@Zfp536!0.50!2.18!Zfp536;;chr2:163372884..163372904,+!p1@Hnf4a!0.50!2.18!Hnf4a;;chr3:3508005..3508021,+!p3@Hnf4g!0.50!2.18!Hnf4g;;chr2:71367871..71367898,+!p1@Dlx1!0.50!2.18!Dlx1;;chr4:133109285..133109308,+!p1@Nr0b2!0.50!2.18!Nr0b2;;chr2:115891534..115891589,-!p1@Meis2!0.49!39.31!Meis2;;chr4:3865501..3865548,-!p1@Plag1!0.49!13.76!Plag1;;chr4:154010918..154010931,-!p1@Prdm16!0.49!7.64!Prdm16;;chr7:87170879..87170914,+!p2@Zfp710!0.49!5.90!Zfp710;;chr2:104966766..104966786,+!p1@Wt1!0.49!3.71!Wt1;;chr6:99470943..99471024,-!p3@Foxp1!0.48!25.77!Foxp1;;chr11:85646303..85646329,+!p1@Tbx2!0.48!17.69!Tbx2;;chr15:40486754..4048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Zfp667;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.22!1.53!Ncoa4;;chr6:53523332..53523343,+!p2@Creb5!0.22!1.31!Creb5;;chr17:21626041..21626052,+!p3@Zfp53!0.22!1.09!Zfp53;;chr4:150503457..150503498,-!p3@Camta1!0.22!0.87!Camta1;;chr3:29912079..29912096,-!p10@Mecom!0.22!0.87!Mecom;;chr2:77357593..77357606,-!p6@Zfp385b!0.22!0.87!Zfp385b;;chr3:89191265..89191276,-!p16@Zbtb7b!0.22!0.66!Zbtb7b;;chr3:128916838..128916856,+!p4@Pitx2!0.22!0.66!Pitx2;;chr2:74543103..74543135,+!p4@Hoxd8!0.22!0.66!Hoxd8;;chr3:29912310..29912321,-!p23@Mecom!0.22!0.66!Mecom;;chr4:13678723..13678739,+!p10@Runx1t1!0.22!0.66!Runx1t1;;chr3:29911947..29911958,-!p14@Mecom!0.22!0.66!Mecom;;chr2:71367142..71367167,+!p2@Dlx1!0.22!0.66!Dlx1;;chr2:75543161..75543173,-!p5@Nfe2l2!0.22!0.66!Nfe2l2;;chr3:94181376..94181403,+!p2@Rorc!0.22!0.66!Rorc;;chr16:94085471..94085495,+!p1@Sim2!0.22!0.66!Sim2;;chr18:76400957..76400968,+!p12@Smad2!0.22!0.66!Smad2;;chr18:61195865..61195880,-!p1@Cdx1!0.22!0.66!Cdx1;;chr15:79178559..79178584,+!p8@Maff!0.22!0.66!Maff;;chr18:64499879..64499895,+!p3@Onecut2!0.22!0.66!Onecut2;;chr16:94085162..94085179,+!p3@Sim2!0.22!0.66!Sim2;;chr16:38294929..38294940,-!p2@Nr1i2!0.22!0.66!Nr1i2;;chr13:53568081..53568094,-!p3@Msx2!0.22!0.66!Msx2;;chr12:87702062..87702081,+!p4@Esrrb!0.22!0.66!Esrrb;;chr13:40829337..40829360,-!p5@Tfap2a!0.22!0.66!Tfap2a;;chr12:39510042..39510069,+!p8@Etv1!0.22!0.66!Etv1;;chr15:102820912..102820923,+!p5@Hoxc8!0.22!0.66!Hoxc8;;chr12:36219283..36219298,-!p2@Ahr!0.22!0.66!Ahr;;chr13:40824310..40824314,-!p6@Tfap2a!0.22!0.66!Tfap2a;;chr12:28027256..28027282,-!p2@Sox11!0.22!0.66!Sox11;;chr10:80555398..80555409,-!p2@Creb3l3!0.22!0.66!Creb3l3;;chr11:96180069..96180089,+!p3@Hoxb4!0.22!0.66!Hoxb4;;chr11:100721732..100721742,+!p3@Stat5a!0.22!0.66!Stat5a;;chr11:97524329..97524348,+!p6@Mllt6!0.22!0.66!Mllt6;;chr11:57645506..57645523,-!p1@Hand1!0.22!0.66!Hand1;;chr11:100721640..100721658,+!p2@Stat5a!0.22!0.66!Stat5a;;chr10:51397572..51397595,+!p1@Rfx6!0.22!0.66!Rfx6;;chr10:80555299..80555306,-!p3@Creb3l3!0.22!0.66!Creb3l3;;chr11:96145362..96145389,+!p4@Hoxb7!0.22!0.66!Hoxb7;;chr11:98822047..98822072,+!p9@Rara!0.22!0.66!Rara;;chr11:98826216..98826227,+!p10@Rara!0.22!0.66!Rara;;chr11:96143962..96144035,+!p2@Hoxb8!0.22!0.66!Hoxb8;;chr11:78200195..78200211,-!p2@Foxn1!0.22!0.66!Foxn1;;chr5:29805170..29805178,-!p2@Mnx1!0.22!0.66!Mnx1;;chr6:30908793..30908815,-!p1@Klf14!0.22!0.66!Klf14;;chr6:6831928..6831949,-!p3@Dlx5!0.22!0.66!Dlx5;;chr5:67490346..67490357,-!p4@Phox2b!0.22!0.66!Phox2b;;chr6:64679112..64679126,+!p1@Atoh1!0.22!0.66!Atoh1;;chr7:138697803..138697813,+!p1@Hmx2!0.22!0.66!Hmx2;;chr7:122989632..122989668,-!p2@Sox6!0.22!0.66!Sox6;;chr5:144951136..144951139,+!p2@Bhlha15!0.22!0.66!Bhlha15;;chr5:148118809..148118832,-!p5@Cdx2!0.22!0.66!Cdx2;;chr6:14851403..14851422,+!p8@Foxp2!0.22!0.66!Foxp2;;chr5:148118614..148118625,-!p4@Cdx2!0.22!0.66!Cdx2;;chr5:115420882..115420896,-!p3@Hnf1a!0.22!0.66!Hnf1a;;chr6:14851212..14851226,+!p12@Foxp2!0.22!0.66!Foxp2;;chr9:96159133..96159145,+!p9@Tfdp2!0.22!0.66!Tfdp2;;chr9:59796330..59796350,-!p6@Nr2e3!0.22!0.66!Nr2e3;;chr2:169458593..169458603,+!p13@Tshz2!0.22!0.66!Tshz2;;chr2:105002682..105002691,+!p10@Wt1!0.22!0.66!Wt1;;chr2:104966662..104966673,+!p4@Wt1!0.22!0.66!Wt1;;chr1:194982959..194983007,+!p5@Irf6!0.22!0.66!Irf6;;chr11:5420973..5420992,+!p1@Xbp1!0.21!155.47!Xbp1;;chr11:112643496..112643562,+!p1@Sox9!0.21!53.94!Sox9;;chr10:93610652..93610711,+!p1@Nr2c1!0.21!20.09!Nr2c1;;chr13:5860749..5860772,+!p2@Klf6!0.21!13.54!Klf6;;chr17:71199121..71199165,-!p2@Tgif1!0.21!9.83!Tgif1;;chrX:45807329..45807370,-!p1@Elf4!0.21!9.61!Elf4;;chr6:53018556..53018650,-!p1@Jazf1!0.21!9.17!Jazf1;;chr11:98821749..98821799,+!p2@Rara!0.21!8.52!Rara;;chr3:135354476..135354528,-!p2@Nfkb1!0.21!7.42!Nfkb1;;chr18:24178808..24178865,-!p2@Zfp191!0.21!7.21!Zfp191;;chr11:23980664..23980706,+!p2@Bcl11a!0.21!5.68!Bcl11a;;chr18:69504123..69504155,+!p5@Tcf4!0.21!4.59!Tcf4;;chr18:69505414..69505465,+!p6@Tcf4!0.21!4.59!Tcf4;;chrX:48558950..48559016,-!p1@Mbnl3!0.21!3.93!Mbnl3;;chr1:133904901..133904934,+!p3@Elk4!0.21!3.49!Elk4;;chr11:5761871..5761882,+!p3@Aebp1!0.21!3.06!Aebp1;;chr11:120494669..120494688,-!p2@Mafg!0.21!2.84!Mafg;;chr18:14130694..14130697,-!p2@Zfp521!0.21!2.62!Zfp521;;chr17:47278081..47278103,+!p1@Trerf1!0.21!2.62!Trerf1;;chr11:23977565..23977612,+!p5@Bcl11a!0.21!2.40!Bcl11a;;chr11:5761979..5761992,+!p2@Aebp1!0.21!2.18!Aebp1;;chr6:39068181..39068206,-!p3@Parp12!0.21!2.18!Parp12;;chr4:97444120..97444141,+!p13@Nfia!0.21!1.97!Nfia;;chr11:70043257..70043263,-!p1@Bcl6b!0.21!1.75!Bcl6b;;chr8:111227493..111227517,+!p@chr8:111227493..111227517,+!0.21!1.75!Zfhx3;;chr15:40486615..40486628,+!p3@Zfpm2!0.21!1.53!Zfpm2;;chr18:79306603..79306620,-!p4@Setbp1!0.21!1.53!Setbp1;;chr2:115891521..115891532,-!p8@Meis2!0.21!1.31!Meis2;;chr15:79178013..79178028,+!p3@Maff!0.21!1.09!Maff;;chr15:79178060..79178074,+!p2@Maff!0.21!1.09!Maff;;chr9:63869890..63869908,-!p6@Smad6!0.21!1.09!Smad6;;chr9:68501549..68501564,+!p6@Rora!0.21!1.09!Rora;;chr15:50720589..50720600,-!p12@Trps1!0.21!1.09!Trps1;;chr10:88145766..88145770,-!p1@Spic!0.21!1.09!Spic;;chr10:126723307..126723319,-!p6@Mbd6!0.21!1.09!Mbd6;;chr15:85566051..85566080,+!p4@Ppara!0.21!0.87!Ppara;;chr2:27532513..27532525,+!p8@Rxra!0.21!0.87!Rxra;;chr1:93698068..93698085,+!p2@Twist2!0.21!0.87!Twist2;;chr13:44936126..44936164,+!p6@Jarid2!0.21!0.87!Jarid2;;chr13:15555428..15555440,+!p7@Gli3!0.21!0.87!Gli3;;chr6:15135439..15135452,+!p13@Foxp2!0.21!0.87!Foxp2;;chr19:55816300..55816332,+!p1@Tcf7l2!0.20!66.82!Tcf7l2;;chr2:153067094..153067130,-!p1@Plagl2!0.20!35.16!Plagl2;;chr6:133985839..133985915,+!p1@Etv6!0.20!23.58!Etv6;;chr17:21625946..21626024,+!p1@Zfp53!0.20!14.85!Zfp53;;chr17:88840054..88840081,+!p2@Foxn2!0.20!11.35!Foxn2;;chr1:170362040..170362113,-!p2@Pbx1!0.20!10.48!Pbx1;;chr4:120488308..120488366,-!p1@Nfyc!0.20!7.64!Nfyc;;chr14:64562503..64562524,+!p1@Sox7!0.20!7.64!Sox7;;chr6:65728988..65729056,+!p1@Prdm5!0.20!6.33!Prdm5;;chr6:131338363..131338383,-!p4@Csda!0.20!5.68!Csda;;chr2:48805044..48805063,+!p3@Mbd5!0.20!5.46!Mbd5;;chr15:79177964..79177986,+!p1@Maff!0.20!4.15!Maff;;chr3:89197551..89197606,-!p2@Zbtb7b!0.20!4.15!Zbtb7b;;chr3:95021663..95021687,-!p3@Gabpb2!0.20!4.15!Gabpb2;;chr15:57907991..57908010,-!p3@Zhx1,p6@9130401M01Rik!0.20!3.06!Zhx1;;chr13:22036953..22037009,+!p1@Zfp184!0.20!3.06!Zfp184;;chr4:82151583..82151594,-!p6@Nfib!0.20!1.97!Nfib;;chr4:149943326..149943351,+!p4@Rere!0.20!1.97!Rere;;chr4:122673187..122673201,+!p2@Mycl1!0.20!1.75!Mycl1;;chr11:101755669..101755686,-!p1@Meox1!0.20!1.75!Meox1;;chr12:3891753..3891801,+!p4@Dnmt3a!0.20!1.53!Dnmt3a;;chr1:165243379..165243402,-!p3@Prrx1!0.20!1.31!Prrx1;;chr13:15555555..15555574,+!p5@Gli3!0.20!1.09!Gli3;;chr18:65741911..65741929,+!p3@Zfp532!0.20!1.09!Zfp532;;chr8:87237711..87237727,-!p11@Nfix!0.20!1.09!Nfix;;chr7:89137163..89137200,-!p1@Bnc1!0.20!0.87!Bnc1;;chr7:144505980..144506010,-!p3@Ebf3!0.20!0.87!Ebf3;;chr10:128082840..128082872,-!p1@Ikzf4!0.20!0.87!Ikzf4;;chr15:61818859..61818873,+!p8@Myc!0.20!0.87!Myc;;chr14:79915521..79915539,+!p5@Elf1!0.20!0.87!Elf1;;chr12:81213989..81214006,-!p1@Zfp36l1!0.19!72.50!Zfp36l1;;chr8:118231723..118231740,-!p1@Maf!0.19!30.57!Maf;;chr11:5420954..5420969,+!p2@Xbp1!0.19!17.03!Xbp1;;chr19:6996243..6996293,-!p1@Esrra!0.19!14.63!Esrra;;chr12:86940338..86940357,+!p1@Jdp2!0.19!13.10!Jdp2;;chr8:124806048..124806094,+!p1@Zfpm1!0.19!12.23!Zfpm1;;chr10:114821444..114821491,-!p1@Thap2!0.19!10.48!Thap2;;chr5:24107779..24107825,-!p1@Smarcd3!0.19!8.73!Smarcd3;;chr1:39250584..39250643,+!p1@Npas2!0.19!6.33!Npas2;;chr4:82151622..82151643,-!p4@Nfib!0.19!5.02!Nfib;;chr17:48061605..48061629,-!p6@Foxp4!0.19!5.02!Foxp4;;chr12:3806536..3806571,+!p3@Dnmt3a!0.19!4.37!Dnmt3a;;chr2:166888058..166888105,-!p2@Znfx1!0.19!3.71!Znfx1;;chr7:134519542..134519569,-!p1@Zfp747!0.19!3.49!Zfp747;;chr7:37483021..37483078,+!p1@Tshz3!0.19!3.49!Tshz3;;chr13:23460838..23460880,-!p2@Zfp322a!0.19!3.28!Zfp322a;;chr1:186556323..186556370,-!p2@Hlx!0.19!3.06!Hlx;;chr1:52176406..52176433,+!p2@Stat1!0.19!2.62!Stat1;;chr12:87027598..87027652,+!p1@Batf!0.19!2.40!Batf;;chr5:76733981..76734018,-!p3@Clock!0.19!2.18!Clock;;chr13:44825008..44825066,+!p5@Jarid2!0.19!1.97!Jarid2;;chr11:101645830..101645881,-!p2@Etv4!0.19!1.75!Etv4;;chr7:135381498..135381509,-!p2@9130023H24Rik!0.19!1.53!9130023H24Rik;;chr1:170361633..170361644,-!p11@Pbx1!0.19!1.53!Pbx1;;chr15:81633139..81633152,+!p4@Tef!0.19!1.53!Tef;;chr17:32525943..32525992,-!p4@Wiz!0.19!1.31!Wiz;;chr10:80600725..80600737,+!p9@Zbtb7a!0.19!1.31!Zbtb7a;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.19!1.31!Ppp1r13l;;chr4:135700687..135700719,+!p2@Id3!0.19!1.31!Id3;;chrX:45245621..45245632,-!p3@Smarca1!0.19!1.09!Smarca1;;chr15:40486540..40486550,+!p6@Zfpm2!0.19!1.09!Zfpm2;;chr13:29045274..29045293,-!p6@Sox4!0.19!0.87!Sox4;;chr7:123177120..123177138,-!p10@Sox6!0.19!0.87!Sox6;;chr10:127095407..127095440,+!p3@Stat6!0.19!0.87!Stat6;;chr1:14746065..14746079,-!p1@Msc!0.19!0.87!Msc;;chr1:170361678..170361689,-!p13@Pbx1!0.19!0.87!Pbx1;;chr8:94325446..94325459,-!p8@Irx3!0.19!0.66!Irx3;;chr4:82151178..82151262,-!p1@Nfib!0.18!55.46!Nfib;;chr13:5860776..5860796,+!p1@Klf6!0.18!32.75!Klf6;;chr7:35904304..35904320,+!p1@Cebpa!0.18!27.51!Cebpa;;chr5:46248712..46248750,-!p1@Lcorl!0.18!20.09!Lcorl;;chr16:42907676..42907797,+!p1@Zbtb20!0.18!17.25!Zbtb20;;chr6:131338400..131338415,-!p3@Csda!0.18!13.54!Csda;;chr10:114821807..114821852,-!p2@Thap2!0.18!8.52!Thap2;;chr15:76709732..76709764,+!p1@Zfp7!0.18!5.90!Zfp7;;chr7:46773114..46773155,+!p1@Zfp619!0.18!4.37!Zfp619;;chr5:120121446..120121461,+!p2@Tbx3!0.18!3.71!Tbx3;;chrX:34443339..34443348,-!p2@Nkrf!0.18!2.84!Nkrf;;chr2:48805065..48805076,+!p4@Mbd5!0.18!2.62!Mbd5;;chr9:48644037..48644067,-!p2@Zbtb16!0.18!2.62!Zbtb16;;chr8:87297280..87297326,-!p2@Nfix!0.18!2.40!Nfix;;chr8:87297878..87297935,-!p3@Nfix!0.18!2.18!Nfix;;chr16:42907656..42907675,+!p10@Zbtb20!0.18!2.18!Zbtb20;;chr4:13670499..13670526,+!p2@Runx1t1!0.18!2.18!Runx1t1;;chr11:3189683..3189744,+!p2@Patz1!0.18!1.97!Patz1;;chr1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@@ Line 41: / Line 44: @@
 |is_a=EFO:0002091;;FF:0011514
 |is_obsolete=
+|library_id=CNhs10999
+|library_id_phase_based=2:CNhs10999
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1286
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1286
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E18.CNhs10999.1286-20C6.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E18.CNhs10999.1286-20C6.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E18.CNhs10999.1286-20C6.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E18.CNhs10999.1286-20C6.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/stomach%252c%2520embryo%2520E18.CNhs10999.1286-20C6.mm9.nobarcode.rdna.fa.gz
 |name=stomach, embryo E18
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10999,LSID730,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.118236018343616,0,0,0,0.0857765460992942,0.0493751600187335,0.325808079100612,0,0.0857765460992942,0,0,0.829790398911906,0,0,0,0,0,0,0.0269276579917574,0,0,0,0.0857765460992942,0,0,0,0,0,0,0,0,0,0.134470473957981,0,0,0,0.0857765460992942,0.00256577699639399,0.0819102547641905,0,-0.139077684810714,0.644063989522366,0.288882012054342,0,0,0,0,0,0,0,0,0,0,0.15737368738825,0,0.406057681804551,0.0857765460992942,0,0,0,0.130937465330752,0,-0.052009721756662,0,0,0.042971898756506,0.11598577550603,0.161412572028605,0.16243177727631,0.134853279447382,0,0.0793650866362981,-0.00986566960281243,0,0.0857765460992942,0,0.0066289217864404,-0.0904193974997281,0.0969783855414426,0.0785420925483421,0,0,0,0,0,0,0.0287724473985207,0.35152503283685,0.133066473321385,0.00916915067015403,0,0,0,0
@@ Line 62: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 82: / Line 97: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1286-20C6;search_select_hide=table117:1286-20C6
 }}

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FF:1286-20C6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:46, 4 June 2020

CNhs10999

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0