FFCP PHASE1:Hg19::chr2:109204953..109204968,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr2:109204953..109204968,+
|short_description=p10@LIMS1
|description=CAGE_peak_10_at_LIMS1_5end
|association_with_transcript=31bp_to_ENST00000393310,NM_0011934...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3987 | |EntrezGene=3987 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6616 | |HGNC=6616 | ||
|TSSclassifier=strong | |||
|UniProt=P48059 | |UniProt=P48059 | ||
|association_with_transcript=31bp_to_ENST00000393310,NM_001193488,uc002teh.2_5end | |||
|cluster_id=chr2:109204953..109204968,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_10_at_LIMS1_5end | |||
|id=chr2:109204953..109204968,+ | |||
|ontology_enrichment_celltype=CL:0000763!6.01e-54!112;CL:0000049!6.01e-54!112;CL:0000766!5.57e-48!76;CL:0002057!1.35e-46!42;CL:0000557!4.10e-43!71;CL:0000860!2.57e-42!45;CL:0000839!4.01e-42!70;CL:0002009!6.82e-40!65;CL:0002194!7.77e-40!63;CL:0000576!7.77e-40!63;CL:0000040!7.77e-40!63;CL:0000559!7.77e-40!63;CL:0000037!1.26e-30!172;CL:0000566!1.26e-30!172;CL:0002032!4.76e-29!165;CL:0000837!4.76e-29!165;CL:0000988!2.52e-27!182;CL:0000738!5.84e-22!140;CL:0002031!1.34e-17!124;CL:0002087!1.55e-16!119;CL:0002393!1.03e-09!9;CL:0002397!1.03e-09!9;CL:0000134!7.33e-08!358;CL:0002320!3.06e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.34e-59;33!CL:0002057;2.34e-59;33!CL:0000473;1.55e-46;39!CL:0000234;1.55e-46;39!CL:0000576;4.75e-39;48!CL:0000766;1.60e-32;69!CL:0000763;8.65e-22;100!CL:0000738;2.94e-11;136!CL:0002393;3.85e-09;6!CL:0002397;3.85e-09;6!CL:0002087;4.25e-09;104!CL:0000988;2.28e-08;177!CL:0000775;7.22e-08;3!CL:0000840;2.41e-07;5!CL:0000094;4.39e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,9.85e-75,42;CL:0002057,9.85e-75,42;CL:0000763,3.24e-72,108;CL:0000049,3.24e-72,108;CL:0000766,7.78e-72,72;CL:0000473,1.97e-71,48;CL:0000234,1.97e-71,48;CL:0002009,7.65e-66,61;CL:0000557,3.15e-65,67;CL:0002194,3.58e-65,59;CL:0000576,3.58e-65,59;CL:0000040,3.58e-65,59;CL:0000559,3.58e-65,59;CL:0000839,2.55e-63,66;CL:0002032,2.45e-43,161;CL:0000837,2.45e-43,161;CL:0000037,1.92e-42,168;CL:0000988,1.76e-39,177;CL:0000738,6.08e-35,136;CL:0002031,5.37e-31,120;CL:0002087,2.57e-29,115;CL:0000134,3.83e-14,354;CL:0002320,1.46e-13,361;CL:0000219,1.57e-11,386;CL:0002393,2.30e-11,9;CL:0002397,2.30e-11,9;CL:0000034,1.51e-10,441;CL:0000048,1.24e-09,427;CL:0000723,2.75e-09,433;CL:0000775,6.03e-08,3;CL:0000840,2.56e-07,5;CL:0001029,2.56e-07,5;CL:0000094,4.25e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.50e-53;42!CL:0000049;6.49e-20;108 | |||
|ontology_enrichment_disease=DOID:8692!4.44e-08!31;DOID:1036!2.52e-07!8 | |||
|ontology_enrichment_disease_v019=DOID:1036;1.47e-10;8!DOID:8692;4.83e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:1036,1.36e-10,8;DOID:8692,2.98e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!3.17e-48!102;UBERON:0003061!3.17e-48!102;UBERON:0002193!7.94e-47!112;UBERON:0002371!2.77e-37!80;UBERON:0001474!6.79e-35!86;UBERON:0002405!6.23e-30!115;UBERON:0004765!1.14e-27!101;UBERON:0001434!1.14e-27!101;UBERON:0003081!2.27e-21!216;UBERON:0002204!1.96e-12!167;UBERON:0000178!3.68e-10!15;UBERON:0000179!3.68e-10!15;UBERON:0000463!3.68e-10!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.19e-14;15!UBERON:0000179;1.19e-14;15!UBERON:0000463;1.19e-14;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.07e-64,98;UBERON:0003061,1.07e-64,98;UBERON:0002193,2.26e-57,108;UBERON:0002371,4.52e-56,76;UBERON:0001474,7.15e-54,82;UBERON:0004765,5.71e-48,90;UBERON:0002405,1.41e-43,93;UBERON:0001434,6.48e-42,100;UBERON:0003081,1.64e-28,203;UBERON:0002204,3.35e-21,167;UBERON:0000178,1.34e-14,15;UBERON:0000179,1.34e-14,15;UBERON:0000463,1.34e-14,15;UBERON:0000926,8.71e-14,315;UBERON:0004120,8.71e-14,315;UBERON:0006603,8.71e-14,315;UBERON:0002384,8.96e-13,371 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0,0.464448369948228,0,0,0,0,0,0.293600439334847,1.66198622559563,1.40381113229099,1.30206522429511,0.223915474239924,0.32389366601898,0,2.76256653681173,8.31327076115381,3.63876091781724,4.88100977501938,13.1573724166984,15.7950249156503,4.02769349251011,6.40401766322752,6.85798466676897,13.7898272294647,20.0100251910986,12.1883837934908,7.52969358170419,13.9182136529501,24.0454128356241,16.5285301880287,40.4370574115878,37.7208904221434,1.31940520074686,4.58766412529753,2.13112375266347,10.447532590629,11.9150897185139,9.9651559839292,3.01498398308092,5.21482918420201,8.03598725408932,2.42159801053347,25.7794345191295,12.6584954976354,2.5350634357433,1.91343869968539,0.628975936525128,0.561643155732475,0.450530678524519,0.16072558669708,1.14005097496499,1.19350006319454,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,1.58030450865046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0,0,0,15.2537275017701,16.3681953061311,7.84451967061304,0.238490624305342,0,0,0,0,0,1.13061588384802,0,0,0,0.516833518338658,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0.183201743930407,1.31780417436063,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0,0.469634776943287,0.144366447761074,0,0,0,0,0,3.7440682422278,0.891786973732369,0,0.335964256397719,0,0,0,0,11.3312544716067,2.3773077183571,0.207328115540772,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,1.09970290300263,0,1.50677127429638,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,1.49801404789436,5.9832291840805,3.31532410748828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,1.07857100409308,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32687795048244,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,1.83778720165568,5.58192370155386,5.35246044999663,3.98753031021914,3.57347663186684,2.05681136543097,7.78167973431261,7.02040868409549,2.37937552888281,0,0,0,0,0,0,0,0.59873811429845,4.0216127727797,4.02179807175377,0,0.842391534340376,0,0.313359791546046,0,3.04725200042886,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,0,2.16364542780786,0.66614393599564,0,0,0.146508179271894,0.242721043499027,0,0,0,0.296964680832639,0,0,0.281338832821026,0,0,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0,0,0.0986434056369336,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0.627921025580099,4.32150372940407,4.28631755172643,3.72518815203705,5.70593395717865,1.3282761290693,5.56278026431325,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0.242780379534093,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0,15.0917976642465,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0,1.03082936549324,0,0,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0.268733889946905,0,0,0,0,0,0,0,0,0,0,0,0,2.0247650239635,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,2.29859058098149,0,0,0,0,0.517131825446202,0.13223260174269,0,0,0.106787412567695,0.628817220398664,0,0,0.790446527591777,0.365377795142688,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591420599958536,0.318593534327405,0,0.310525913752519,0,0,0,1.05180326298053,0,0,0.363697318405119,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0.256241518587947,0,0,0.276516872303462,0.389720617678777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.413373593002368,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0,0.271878931907327,0,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,4.65725755210022,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,0,0.0939839179798536,0.128915775947154,0.0999411559249289,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.426467963801962,0,0.129177819672012,0.186224142887574,0,0,0,0.217716747896961,0,0.202056159043763,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,0,0.464448369948228,0,0,0,0,0,0.293600439334847,1.66198622559563,1.40381113229099,1.30206522429511,0.223915474239924,0.32389366601898,0,2.76256653681173,8.31327076115381,3.63876091781724,4.88100977501938,13.1573724166984,15.7950249156503,4.02769349251011,6.40401766322752,6.85798466676897,13.7898272294647,20.0100251910986,12.1883837934908,7.52969358170419,13.9182136529501,24.0454128356241,16.5285301880287,40.4370574115878,37.7208904221434,1.31940520074686,4.58766412529753,2.13112375266347,10.447532590629,11.9150897185139,9.9651559839292,3.01498398308092,5.21482918420201,8.03598725408932,2.42159801053347,25.7794345191295,12.6584954976354,2.5350634357433,1.91343869968539,0.628975936525128,0.561643155732475,0.450530678524519,0.16072558669708,1.14005097496499,1.19350006319454,0.730656615058536,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,1.12101712596307,1.58030450865046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0,0,0,15.2537275017701,16.3681953061311,7.84451967061304,0.238490624305342,0,0,0,0,0,1.13061588384802,0,0,0,0.516833518338658,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0.183201743930407,1.31780417436063,0,0,0,0,0,0,0,0,0,0.24666754841716,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0,0,0,0,0,0.469634776943287,0.144366447761074,0,0,0,0,0,3.7440682422278,0.891786973732369,0,0.335964256397719,0,0,0,0,11.3312544716067,2.3773077183571,0.207328115540772,0.144119953416961,0.37872730027914,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,1.09970290300263,0,1.50677127429638,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0,1.49801404789436,5.9832291840805,3.31532410748828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.82707210449155,1.07857100409308,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32687795048244,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,1.83778720165568,5.58192370155386,5.35246044999663,3.98753031021914,3.57347663186684,2.05681136543097,7.78167973431261,7.02040868409549,2.37937552888281,0,0,0,0,0,0,0,0.59873811429845,4.0216127727797,4.02179807175377,0,0.842391534340376,0,0.313359791546046,0,3.04725200042886,0,0,0,0.343505344755765,0,0,0,0,0.278406173895242,0,2.16364542780786,0.66614393599564,0,0,0.146508179271894,0.242721043499027,0,0,0,0.296964680832639,0,0,0.281338832821026,0,0,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0,0,0.0986434056369336,4.7896618469388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0.627921025580099,4.32150372940407,4.28631755172643,3.72518815203705,5.70593395717865,1.3282761290693,5.56278026431325,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0.242780379534093,1.18375320854817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.51595809741485,0,0,0,0,15.0917976642465,0,0.137041924646751,0,0,0,0,0.213452994739353,0,0,1.03082936549324,0,0,0,0,0,0,0,0.288950589901519,0,0.273810757783986,0,0,0,0,0,0,0,0,0,0.268733889946905,0,0,0,0,0,0,0,0,0,0,0,0,2.0247650239635,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,2.29859058098149,0,0,0,0,0.517131825446202,0.13223260174269,0,0,0.106787412567695,0.628817220398664,0,0,0.790446527591777,0.365377795142688,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0.248385611765534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.591420599958536,0.318593534327405,0,0.310525913752519,0,0,0,1.05180326298053,0,0,0.363697318405119,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0.256241518587947,0,0,0.276516872303462,0.389720617678777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128458450192919,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.413373593002368,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0.115233987555779,0,0.271878931907327,0,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,4.65725755210022,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0.196308467114945,0.297046400327086,0.4226557275834,0,0.0939839179798536,0.128915775947154,0.0999411559249289,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0.426467963801962,0,0.129177819672012,0.186224142887574,0,0,0,0.217716747896961,0,0.202056159043763,0.0717222053926763,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p10@LIMS1 | |||
}} | }} |
Latest revision as of 06:22, 16 September 2015
Short description: | p10@LIMS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LIMS1_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | 31bp_to_ENST00000393310, NM_001193488, uc002teh.2_5end |
EntrezGene: | LIMS1 |
HGNC: | 6616 |
UniProt: | P48059 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.07e-64 | 98 |
blood island | 1.07e-64 | 98 |
hemolymphoid system | 2.26e-57 | 108 |
bone marrow | 4.52e-56 | 76 |
bone element | 7.15e-54 | 82 |
skeletal element | 5.71e-48 | 90 |
immune system | 1.41e-43 | 93 |
skeletal system | 6.48e-42 | 100 |
lateral plate mesoderm | 1.64e-28 | 203 |
musculoskeletal system | 3.35e-21 | 167 |
blood | 1.34e-14 | 15 |
haemolymphatic fluid | 1.34e-14 | 15 |
organism substance | 1.34e-14 | 15 |
mesoderm | 8.71e-14 | 315 |
mesoderm-derived structure | 8.71e-14 | 315 |
presumptive mesoderm | 8.71e-14 | 315 |
connective tissue | 8.96e-13 | 371 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.36e-10 | 8 |
myeloid leukemia | 2.98e-07 | 31 |