FFCP PHASE1:Hg19::chr4:43341791..43341824,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:43341791..43341824,+ | |||
|coexpression_cluster_id=C1401 | |coexpression_cluster_id=C1401 | ||
|description=CAGE_peak_at_chr4:43341791..43341824,+ | |description=CAGE_peak_at_chr4:43341791..43341824,+ | ||
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|ontology_enrichment_celltype=CL:0000055!5.42e-23!180;CL:0000680!2.72e-18!57;CL:0000056!2.72e-18!57;CL:0000355!2.72e-18!57;CL:0000057!3.40e-17!75;CL:0000187!1.21e-15!54;CL:0000183!1.57e-15!59;CL:0000048!3.81e-13!430;CL:0000393!4.43e-13!60;CL:0000211!4.43e-13!60;CL:0000723!1.59e-12!436;CL:0000034!9.95e-12!444;CL:0000548!3.22e-11!679;CL:0000004!3.22e-11!679;CL:0000255!3.22e-11!679;CL:0002620!3.60e-11!23;CL:0000012!5.59e-11!682;CL:0000192!1.51e-10!42;CL:0000514!1.51e-10!42;CL:0000188!8.08e-10!9;CL:0002539!1.02e-09!10;CL:0000144!1.79e-09!625;CL:0002371!1.74e-08!591;CL:0000222!3.21e-08!119;CL:0000003!5.58e-08!722;CL:0002570!5.79e-08!8;CL:0002551!1.09e-07!6;CL:0000359!4.11e-07!32 | |ontology_enrichment_celltype=CL:0000055!5.42e-23!180;CL:0000680!2.72e-18!57;CL:0000056!2.72e-18!57;CL:0000355!2.72e-18!57;CL:0000057!3.40e-17!75;CL:0000187!1.21e-15!54;CL:0000183!1.57e-15!59;CL:0000048!3.81e-13!430;CL:0000393!4.43e-13!60;CL:0000211!4.43e-13!60;CL:0000723!1.59e-12!436;CL:0000034!9.95e-12!444;CL:0000548!3.22e-11!679;CL:0000004!3.22e-11!679;CL:0000255!3.22e-11!679;CL:0002620!3.60e-11!23;CL:0000012!5.59e-11!682;CL:0000192!1.51e-10!42;CL:0000514!1.51e-10!42;CL:0000188!8.08e-10!9;CL:0002539!1.02e-09!10;CL:0000144!1.79e-09!625;CL:0002371!1.74e-08!591;CL:0000222!3.21e-08!119;CL:0000003!5.58e-08!722;CL:0002570!5.79e-08!8;CL:0002551!1.09e-07!6;CL:0000359!4.11e-07!32 | ||
|ontology_enrichment_celltype_v019=CL:0000188;1.69e-16;9!CL:0000680;6.44e-16;7!CL:0002570;3.35e-10;8!CL:0000056;1.19e-09;4!CL:0000723;1.27e-08;61!CL:0000594;5.97e-08;3!CL:0002582;8.03e-08;3!CL:0000515;1.27e-07;3!CL:0002622;1.58e-07;3!CL:0000034;4.57e-07;69!CL:0000187;5.54e-07;55!CL:0000134;8.45e-07;55 | |ontology_enrichment_celltype_v019=CL:0000188;1.69e-16;9!CL:0000680;6.44e-16;7!CL:0002570;3.35e-10;8!CL:0000056;1.19e-09;4!CL:0000723;1.27e-08;61!CL:0000594;5.97e-08;3!CL:0002582;8.03e-08;3!CL:0000515;1.27e-07;3!CL:0002622;1.58e-07;3!CL:0000034;4.57e-07;69!CL:0000187;5.54e-07;55!CL:0000134;8.45e-07;55 | ||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.80e-16,9;CL:0000680,4.52e-14,58;CL:0000056,4.52e-14,58;CL:0000355,4.52e-14,58;CL:0000187,8.36e-11,55;CL:0002570,3.25e-10,8;CL:0000515,7.76e-10,4;CL:0000393,2.85e-09,61;CL:0000211,2.85e-09,61;CL:0000048,2.29e-08,427;CL:0000723,4.87e-08,433;CL:0000594,6.06e-08,3;CL:0002582,6.67e-08,3;CL:0002622,1.23e-07,3;CL:0000034,1.28e-07,441 | |||
|ontology_enrichment_development_v019=CL:0000515;1.19e-09;4!CL:0000355;1.55e-08;58 | |ontology_enrichment_development_v019=CL:0000515;1.19e-09;4!CL:0000355;1.55e-08;58 | ||
|ontology_enrichment_disease=DOID:2394!2.16e-14!14;DOID:120!2.88e-11!27;DOID:193!4.04e-10!29 | |ontology_enrichment_disease=DOID:2394!2.16e-14!14;DOID:120!2.88e-11!27;DOID:193!4.04e-10!29 | ||
|ontology_enrichment_disease_v019=DOID:2394;3.16e-18;14!DOID:120;1.18e-11;27!DOID:193;1.23e-10;29 | |ontology_enrichment_disease_v019=DOID:2394;3.16e-18;14!DOID:120;1.18e-11;27!DOID:193;1.23e-10;29 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,3.42e-18,14;DOID:120,1.12e-11,27;DOID:193,1.17e-10,29 | |||
|ontology_enrichment_uberon=UBERON:0000914!6.86e-21!83;UBERON:0002329!6.86e-21!83;UBERON:0003077!6.86e-21!83;UBERON:0003059!6.86e-21!83;UBERON:0007282!6.86e-21!83;UBERON:0009618!6.86e-21!83;UBERON:0007285!6.86e-21!83;UBERON:0004290!1.01e-19!70;UBERON:0000486!2.07e-19!82;UBERON:0001134!2.39e-16!61;UBERON:0002036!2.39e-16!61;UBERON:0003082!2.39e-16!61;UBERON:0002385!1.78e-15!63;UBERON:0001015!1.78e-15!63;UBERON:0000383!1.78e-15!63;UBERON:0005256!1.16e-11!143;UBERON:0001135!2.38e-10!15;UBERON:0004573!4.36e-10!33;UBERON:0004571!4.36e-10!33;UBERON:0003102!8.60e-10!95;UBERON:0004237!1.02e-09!10;UBERON:0004695!1.02e-09!10;UBERON:0002111!1.02e-09!10;UBERON:0004178!1.02e-09!10;UBERON:0001637!2.48e-09!42;UBERON:0003509!2.48e-09!42;UBERON:0004572!2.48e-09!42;UBERON:0000947!5.14e-09!21;UBERON:0010191!5.14e-09!21;UBERON:0003100!9.11e-09!41;UBERON:0003134!3.09e-08!37;UBERON:0000474!3.09e-08!37;UBERON:0000490!5.54e-08!138;UBERON:0002199!2.42e-07!45;UBERON:0002416!2.42e-07!45;UBERON:0000992!2.43e-07!13;UBERON:0002100!4.16e-07!216;UBERON:0005156!5.07e-07!59;UBERON:0000990!5.07e-07!59 | |ontology_enrichment_uberon=UBERON:0000914!6.86e-21!83;UBERON:0002329!6.86e-21!83;UBERON:0003077!6.86e-21!83;UBERON:0003059!6.86e-21!83;UBERON:0007282!6.86e-21!83;UBERON:0009618!6.86e-21!83;UBERON:0007285!6.86e-21!83;UBERON:0004290!1.01e-19!70;UBERON:0000486!2.07e-19!82;UBERON:0001134!2.39e-16!61;UBERON:0002036!2.39e-16!61;UBERON:0003082!2.39e-16!61;UBERON:0002385!1.78e-15!63;UBERON:0001015!1.78e-15!63;UBERON:0000383!1.78e-15!63;UBERON:0005256!1.16e-11!143;UBERON:0001135!2.38e-10!15;UBERON:0004573!4.36e-10!33;UBERON:0004571!4.36e-10!33;UBERON:0003102!8.60e-10!95;UBERON:0004237!1.02e-09!10;UBERON:0004695!1.02e-09!10;UBERON:0002111!1.02e-09!10;UBERON:0004178!1.02e-09!10;UBERON:0001637!2.48e-09!42;UBERON:0003509!2.48e-09!42;UBERON:0004572!2.48e-09!42;UBERON:0000947!5.14e-09!21;UBERON:0010191!5.14e-09!21;UBERON:0003100!9.11e-09!41;UBERON:0003134!3.09e-08!37;UBERON:0000474!3.09e-08!37;UBERON:0000490!5.54e-08!138;UBERON:0002199!2.42e-07!45;UBERON:0002416!2.42e-07!45;UBERON:0000992!2.43e-07!13;UBERON:0002100!4.16e-07!216;UBERON:0005156!5.07e-07!59;UBERON:0000990!5.07e-07!59 | ||
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|ontology_enrichment_uberon_v019_2=UBERON:0000486,4.27e-16,83;UBERON:0002329,1.47e-15,71;UBERON:0003059,1.47e-15,71;UBERON:0007282,1.47e-15,71;UBERON:0004290,1.47e-15,71;UBERON:0009618,1.47e-15,71;UBERON:0003077,3.03e-15,72;UBERON:0007285,3.03e-15,72;UBERON:0007524,6.13e-15,73;UBERON:0007503,1.56e-13,78;UBERON:0001134,8.75e-13,62;UBERON:0002036,8.75e-13,62;UBERON:0003082,8.75e-13,62;UBERON:0002385,3.33e-12,64;UBERON:0001015,3.33e-12,64;UBERON:0000383,3.33e-12,64;UBERON:0002119,1.65e-10,4;UBERON:0005256,2.01e-09,122;UBERON:0000992,2.24e-08,13;UBERON:0003100,2.29e-08,41;UBERON:0003134,2.50e-08,37;UBERON:0000474,2.50e-08,37;UBERON:0001013,3.12e-07,14;UBERON:0000490,3.54e-07,148 | |||
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| ||
|short_description=p@chr4:43341791..43341824,+ | |short_description=p@chr4:43341791..43341824,+ | ||
}} | }} |
Latest revision as of 05:20, 30 July 2015
Short description: | p@chr4:43341791..43341824, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:43341791..43341824, + |
Coexpression cluster: | C1401_Smooth_Fibroblast_leiomyoma_malignant_Small_Skeletal_Preadipocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.80e-16 | 9 |
muscle precursor cell | 4.52e-14 | 58 |
myoblast | 4.52e-14 | 58 |
multi-potent skeletal muscle stem cell | 4.52e-14 | 58 |
muscle cell | 8.36e-11 | 55 |
mesenchymal stem cell of adipose | 3.25e-10 | 8 |
skeletal muscle myoblast | 7.76e-10 | 4 |
electrically responsive cell | 2.85e-09 | 61 |
electrically active cell | 2.85e-09 | 61 |
multi fate stem cell | 2.29e-08 | 427 |
somatic stem cell | 4.87e-08 | 433 |
skeletal muscle satellite cell | 6.06e-08 | 3 |
visceral preadipocyte | 6.67e-08 | 3 |
prostate stromal cell | 1.23e-07 | 3 |
stem cell | 1.28e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 4.27e-16 | 83 |
somite | 1.47e-15 | 71 |
presomitic mesoderm | 1.47e-15 | 71 |
presumptive segmental plate | 1.47e-15 | 71 |
dermomyotome | 1.47e-15 | 71 |
trunk paraxial mesoderm | 1.47e-15 | 71 |
paraxial mesoderm | 3.03e-15 | 72 |
presumptive paraxial mesoderm | 3.03e-15 | 72 |
dense mesenchyme tissue | 6.13e-15 | 73 |
epithelial vesicle | 1.56e-13 | 78 |
skeletal muscle tissue | 8.75e-13 | 62 |
striated muscle tissue | 8.75e-13 | 62 |
myotome | 8.75e-13 | 62 |
muscle tissue | 3.33e-12 | 64 |
musculature | 3.33e-12 | 64 |
musculature of body | 3.33e-12 | 64 |
left ovary | 1.65e-10 | 4 |
trunk mesenchyme | 2.01e-09 | 122 |
female gonad | 2.24e-08 | 13 |
female organism | 2.29e-08 | 41 |
female reproductive organ | 2.50e-08 | 37 |
female reproductive system | 2.50e-08 | 37 |
adipose tissue | 3.12e-07 | 14 |
unilaminar epithelium | 3.54e-07 | 148 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.42e-18 | 14 |
female reproductive organ cancer | 1.12e-11 | 27 |
reproductive organ cancer | 1.17e-10 | 29 |