FFCP PHASE1:Hg19::chr22:40297105..40297116,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr22:40297105..40297116,+
|short_description=p7@GRAP2
|description=CAGE_peak_7_at_GRAP2_5end
|association_with_transcript=0bp_to_ENST00000540310_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9402 | |EntrezGene=9402 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4563 | |HGNC=4563 | ||
|TSSclassifier=strong | |||
|UniProt=F5H548 | |UniProt=F5H548 | ||
|association_with_transcript=0bp_to_ENST00000540310_5end | |||
|cluster_id=chr22:40297105..40297116,+ | |||
|coexpression_cluster_id=C2218 | |||
|description=CAGE_peak_7_at_GRAP2_5end | |||
|id=chr22:40297105..40297116,+ | |||
|ontology_enrichment_celltype=CL:0000542!3.61e-40!53;CL:0000051!3.61e-40!53;CL:0000838!5.32e-39!52;CL:0000791!2.33e-28!18;CL:0000789!2.33e-28!18;CL:0002420!2.33e-28!18;CL:0002419!2.33e-28!18;CL:0000790!2.33e-28!18;CL:0000084!5.04e-26!25;CL:0000827!5.04e-26!25;CL:0000037!6.15e-26!172;CL:0000566!6.15e-26!172;CL:0000738!3.46e-25!140;CL:0002032!2.00e-23!165;CL:0000837!2.00e-23!165;CL:0000988!2.13e-23!182;CL:0002031!6.10e-21!124;CL:0002087!1.46e-19!119;CL:0000625!8.57e-19!11;CL:0000945!2.04e-11!24;CL:0000826!2.04e-11!24;CL:0002274!4.62e-10!5;CL:0000457!4.62e-10!5;CL:0002191!4.62e-10!5;CL:0000097!4.62e-10!5;CL:0000831!4.62e-10!5;CL:0002028!4.62e-10!5;CL:0000624!4.78e-10!6;CL:0000236!5.46e-09!14 | |||
|ontology_enrichment_celltype_v019=CL:0000791;1.20e-37;18!CL:0000789;1.20e-37;18!CL:0002419;1.20e-37;18!CL:0000084;1.60e-33;25!CL:0000625;4.63e-29;11!CL:0000542;4.82e-18;53!CL:0000097;9.58e-18;5!CL:0000624;8.48e-13;6!CL:0000898;5.43e-10;3!CL:0000623;1.06e-09;3!CL:0000163;1.16e-09;9!CL:0000815;4.11e-07;2!CL:0000792;4.11e-07;2!CL:0002677;4.11e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,5.55e-38,52;CL:0000791,8.32e-38,18;CL:0000789,8.32e-38,18;CL:0002420,8.32e-38,18;CL:0002419,8.32e-38,18;CL:0000790,8.32e-38,18;CL:0000542,3.99e-37,53;CL:0000051,3.99e-37,53;CL:0000084,1.06e-33,25;CL:0000827,1.06e-33,25;CL:0000625,3.49e-29,11;CL:0000738,9.94e-23,136;CL:0000037,1.01e-21,168;CL:0000988,4.20e-20,177;CL:0002031,3.39e-19,120;CL:0002032,4.48e-19,161;CL:0000837,4.48e-19,161;CL:0000097,9.80e-18,5;CL:0002028,9.80e-18,5;CL:0002087,1.66e-15,115;CL:0000624,7.59e-13,6;CL:0000898,7.21e-10,3;CL:0000623,1.14e-09,3;CL:0000825,1.14e-09,3;CL:0000163,1.18e-09,9;CL:0000815,5.21e-07,2;CL:0000792,5.21e-07,2;CL:0002677,5.21e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;1.20e-37;18!CL:0000051;4.82e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!2.56e-11!7;UBERON:0007023!3.74e-09!115;UBERON:0002370!1.31e-07!4;UBERON:0005058!1.31e-07!4;UBERON:0009113!1.31e-07!4;UBERON:0003295!1.31e-07!4;UBERON:0005562!1.31e-07!4;UBERON:0000178!3.43e-07!15;UBERON:0000179!3.43e-07!15;UBERON:0000463!3.43e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.26e-09;15!UBERON:0000179;8.26e-09;15!UBERON:0000463;8.26e-09;15!UBERON:0002370;4.67e-08;2!UBERON:0005058;4.67e-08;2!UBERON:0009113;4.67e-08;2!UBERON:0002390;2.76e-07;32!UBERON:0004177;7.53e-07;5!UBERON:0005057;7.53e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.11e-08,15;UBERON:0000179,1.11e-08,15;UBERON:0000463,1.11e-08,15;UBERON:0002370,2.80e-08,4;UBERON:0005058,2.80e-08,4;UBERON:0009113,2.80e-08,4;UBERON:0003295,2.80e-08,4;UBERON:0005562,2.80e-08,4;UBERON:0004177,5.36e-08,7;UBERON:0005057,5.36e-08,7 | |||
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| ||
|short_description=p7@GRAP2 | |||
}} | }} |
Latest revision as of 19:18, 24 September 2015
Short description: | p7@GRAP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_GRAP2_5end |
Coexpression cluster: | C2218_Mast_splenic_CD8_thymus_CD4_Hodgkin_Natural |
Association with transcript: | 0bp_to_ENST00000540310_5end |
EntrezGene: | GRAP2 |
HGNC: | 4563 |
UniProt: | F5H548 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 5.55e-38 | 52 |
mature alpha-beta T cell | 8.32e-38 | 18 |
alpha-beta T cell | 8.32e-38 | 18 |
immature T cell | 8.32e-38 | 18 |
mature T cell | 8.32e-38 | 18 |
immature alpha-beta T cell | 8.32e-38 | 18 |
lymphocyte | 3.99e-37 | 53 |
common lymphoid progenitor | 3.99e-37 | 53 |
T cell | 1.06e-33 | 25 |
pro-T cell | 1.06e-33 | 25 |
CD8-positive, alpha-beta T cell | 3.49e-29 | 11 |
leukocyte | 9.94e-23 | 136 |
hematopoietic stem cell | 1.01e-21 | 168 |
hematopoietic cell | 4.20e-20 | 177 |
hematopoietic lineage restricted progenitor cell | 3.39e-19 | 120 |
hematopoietic oligopotent progenitor cell | 4.48e-19 | 161 |
hematopoietic multipotent progenitor cell | 4.48e-19 | 161 |
mast cell | 9.80e-18 | 5 |
basophil mast progenitor cell | 9.80e-18 | 5 |
nongranular leukocyte | 1.66e-15 | 115 |
CD4-positive, alpha-beta T cell | 7.59e-13 | 6 |
naive T cell | 7.21e-10 | 3 |
natural killer cell | 1.14e-09 | 3 |
pro-NK cell | 1.14e-09 | 3 |
endocrine cell | 1.18e-09 | 9 |
regulatory T cell | 5.21e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 5.21e-07 | 2 |
naive regulatory T cell | 5.21e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.11e-08 | 15 |
haemolymphatic fluid | 1.11e-08 | 15 |
organism substance | 1.11e-08 | 15 |
thymus | 2.80e-08 | 4 |
hemolymphoid system gland | 2.80e-08 | 4 |
thymic region | 2.80e-08 | 4 |
pharyngeal gland | 2.80e-08 | 4 |
thymus primordium | 2.80e-08 | 4 |
hemopoietic organ | 5.36e-08 | 7 |
immune organ | 5.36e-08 | 7 |