FFCP PHASE1:Hg19::chr22:37627503..37627591,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:37627503..37627591,-
|short_description=p6@RAC2
|description=CAGE_peak_6_at_RAC2_5end
|association_with_transcript=0bp_to_ENST00000481215_5end
|EntrezGen...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5880 | |EntrezGene=5880 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9802 | |HGNC=9802 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000481215_5end | |||
|cluster_id=chr22:37627503..37627591,- | |||
|coexpression_cluster_id=C98 | |||
|description=CAGE_peak_6_at_RAC2_5end | |||
|id=chr22:37627503..37627591,- | |||
|ontology_enrichment_celltype=CL:0000084!1.24e-34!25;CL:0000827!1.24e-34!25;CL:0000838!5.08e-27!52;CL:0000738!5.47e-27!140;CL:0000542!2.72e-26!53;CL:0000051!2.72e-26!53;CL:0000791!8.67e-26!18;CL:0000789!8.67e-26!18;CL:0002420!8.67e-26!18;CL:0002419!8.67e-26!18;CL:0000790!8.67e-26!18;CL:0000037!1.39e-23!172;CL:0000566!1.39e-23!172;CL:0002031!1.04e-22!124;CL:0002032!4.40e-22!165;CL:0000837!4.40e-22!165;CL:0002087!1.90e-21!119;CL:0000988!3.51e-21!182;CL:0000625!3.55e-19!11;CL:0000624!4.00e-10!6;CL:0002274!2.29e-07!5;CL:0000457!2.29e-07!5;CL:0002191!2.29e-07!5;CL:0000097!2.29e-07!5;CL:0000831!2.29e-07!5;CL:0002028!2.29e-07!5 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.24e-54;25!CL:0000791;2.42e-51;18!CL:0000789;2.42e-51;18!CL:0002419;2.42e-51;18!CL:0000625;2.24e-37;11!CL:0000624;7.73e-19;6!CL:0000542;4.91e-17;53!CL:0000226;1.38e-10;3!CL:0000842;1.38e-10;3!CL:0000898;5.10e-10;3!CL:0000623;5.70e-10;3!CL:0000815;3.18e-07;2!CL:0000792;3.18e-07;2!CL:0002677;3.18e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.10e-54,25;CL:0000827,1.10e-54,25;CL:0000791,1.98e-51,18;CL:0000789,1.98e-51,18;CL:0002420,1.98e-51,18;CL:0002419,1.98e-51,18;CL:0000790,1.98e-51,18;CL:0000625,2.25e-37,11;CL:0000838,7.94e-31,52;CL:0000542,4.02e-30,53;CL:0000051,4.02e-30,53;CL:0000624,6.29e-19,6;CL:0000738,1.40e-17,136;CL:0002087,1.95e-16,115;CL:0002031,5.23e-14,120;CL:0000037,1.07e-12,168;CL:0000988,1.19e-11,177;CL:0000226,1.22e-10,3;CL:0000842,1.22e-10,3;CL:0002032,1.64e-10,161;CL:0000837,1.64e-10,161;CL:0000898,4.57e-10,3;CL:0000623,8.33e-10,3;CL:0000825,8.33e-10,3;CL:0000815,2.80e-07,2;CL:0000792,2.80e-07,2;CL:0002677,2.80e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000790;2.42e-51;18!CL:0000051;4.91e-17;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!1.09e-14!15;UBERON:0000179!1.09e-14!15;UBERON:0000463!1.09e-14!15;UBERON:0002390!2.46e-12!102;UBERON:0003061!2.46e-12!102;UBERON:0002193!6.31e-12!112 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.90e-29;15!UBERON:0000179;1.90e-29;15!UBERON:0000463;1.90e-29;15!UBERON:0002390;2.45e-18;32!UBERON:0002193;4.37e-11;42!UBERON:0002370;2.47e-08;2!UBERON:0005058;2.47e-08;2!UBERON:0009113;2.47e-08;2!UBERON:0004177;8.42e-07;5!UBERON:0005057;8.42e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,1.57e-29,15;UBERON:0000179,1.57e-29,15;UBERON:0000463,1.57e-29,15;UBERON:0002370,2.08e-08,4;UBERON:0005058,2.08e-08,4;UBERON:0009113,2.08e-08,4;UBERON:0003295,2.08e-08,4;UBERON:0005562,2.08e-08,4;UBERON:0002390,3.78e-08,98;UBERON:0003061,3.78e-08,98;UBERON:0002193,6.90e-08,108;UBERON:0004177,6.99e-08,7;UBERON:0005057,6.99e-08,7 | |||
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| ||
|short_description=p6@RAC2 | |||
}} | }} |
Latest revision as of 04:36, 20 September 2015
Short description: | p6@RAC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RAC2_5end |
Coexpression cluster: | C98_CD8_Natural_Basophils_blood_CD4_Peripheral_Whole |
Association with transcript: | 0bp_to_ENST00000481215_5end |
EntrezGene: | RAC2 |
HGNC: | 9802 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.10e-54 | 25 |
pro-T cell | 1.10e-54 | 25 |
mature alpha-beta T cell | 1.98e-51 | 18 |
alpha-beta T cell | 1.98e-51 | 18 |
immature T cell | 1.98e-51 | 18 |
mature T cell | 1.98e-51 | 18 |
immature alpha-beta T cell | 1.98e-51 | 18 |
CD8-positive, alpha-beta T cell | 2.25e-37 | 11 |
lymphoid lineage restricted progenitor cell | 7.94e-31 | 52 |
lymphocyte | 4.02e-30 | 53 |
common lymphoid progenitor | 4.02e-30 | 53 |
CD4-positive, alpha-beta T cell | 6.29e-19 | 6 |
leukocyte | 1.40e-17 | 136 |
nongranular leukocyte | 1.95e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 5.23e-14 | 120 |
hematopoietic stem cell | 1.07e-12 | 168 |
hematopoietic cell | 1.19e-11 | 177 |
single nucleate cell | 1.22e-10 | 3 |
mononuclear cell | 1.22e-10 | 3 |
hematopoietic oligopotent progenitor cell | 1.64e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.64e-10 | 161 |
naive T cell | 4.57e-10 | 3 |
natural killer cell | 8.33e-10 | 3 |
pro-NK cell | 8.33e-10 | 3 |
regulatory T cell | 2.80e-07 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 2.80e-07 | 2 |
naive regulatory T cell | 2.80e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
blood | 1.57e-29 | 15 |
haemolymphatic fluid | 1.57e-29 | 15 |
organism substance | 1.57e-29 | 15 |
thymus | 2.08e-08 | 4 |
hemolymphoid system gland | 2.08e-08 | 4 |
thymic region | 2.08e-08 | 4 |
pharyngeal gland | 2.08e-08 | 4 |
thymus primordium | 2.08e-08 | 4 |
hematopoietic system | 3.78e-08 | 98 |
blood island | 3.78e-08 | 98 |
hemolymphoid system | 6.90e-08 | 108 |
hemopoietic organ | 6.99e-08 | 7 |
immune organ | 6.99e-08 | 7 |