FFCP PHASE1:Hg19::chr1:218615509..218615516,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7042 | |EntrezGene=7042 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11768 | |HGNC=11768 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-451bp_to_AK021874_5end | |association_with_transcript=-451bp_to_AK021874_5end | ||
|cluster_id=chr1:218615509..218615516,+ | |||
|coexpression_cluster_id=C3939 | |coexpression_cluster_id=C3939 | ||
|description=CAGE_peak_13_at_TGFB2_5end | |description=CAGE_peak_13_at_TGFB2_5end | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000064;3.37e-14;3!CL:0000067;3.37e-14;3!CL:0005012;3.37e-14;3!CL:0002304;3.37e-14;3!CL:0000075;3.33e-11;27!CL:0000306;2.47e-10;4!CL:0002222;2.47e-10;4!CL:0002224;2.47e-10;4!CL:0000710;4.57e-07;20 | |ontology_enrichment_celltype_v019=CL:0000064;3.37e-14;3!CL:0000067;3.37e-14;3!CL:0005012;3.37e-14;3!CL:0002304;3.37e-14;3!CL:0000075;3.33e-11;27!CL:0000306;2.47e-10;4!CL:0002222;2.47e-10;4!CL:0002224;2.47e-10;4!CL:0000710;4.57e-07;20 | ||
|ontology_enrichment_celltype_v019_2=CL:0000064,2.86e-14,3;CL:0000067,2.86e-14,3;CL:0005012,2.86e-14,3;CL:0002304,2.86e-14,3;CL:0000075,4.17e-11,27;CL:0000306,2.52e-10,4;CL:0002222,2.52e-10,4;CL:0002224,2.52e-10,4;CL:0000710,5.53e-07,20 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!2.35e-14!123;UBERON:0000153!3.52e-13!129;UBERON:0007811!3.52e-13!129;UBERON:0000481!3.76e-12!347;UBERON:0000119!6.67e-12!312;UBERON:0000483!4.04e-11!309;UBERON:0000477!4.82e-10!286;UBERON:0000475!8.68e-10!365;UBERON:0004111!5.17e-09!241;UBERON:0000924!1.60e-08!173;UBERON:0006601!1.60e-08!173;UBERON:0002346!1.94e-08!90;UBERON:0004121!2.07e-08!169;UBERON:0003075!2.09e-08!86;UBERON:0007284!2.09e-08!86;UBERON:0000955!1.58e-07!69;UBERON:0006238!1.58e-07!69;UBERON:0003056!2.21e-07!61;UBERON:0007625!4.02e-07!11;UBERON:0002616!6.87e-07!59 | |ontology_enrichment_uberon=UBERON:0000033!2.35e-14!123;UBERON:0000153!3.52e-13!129;UBERON:0007811!3.52e-13!129;UBERON:0000481!3.76e-12!347;UBERON:0000119!6.67e-12!312;UBERON:0000483!4.04e-11!309;UBERON:0000477!4.82e-10!286;UBERON:0000475!8.68e-10!365;UBERON:0004111!5.17e-09!241;UBERON:0000924!1.60e-08!173;UBERON:0006601!1.60e-08!173;UBERON:0002346!1.94e-08!90;UBERON:0004121!2.07e-08!169;UBERON:0003075!2.09e-08!86;UBERON:0007284!2.09e-08!86;UBERON:0000955!1.58e-07!69;UBERON:0006238!1.58e-07!69;UBERON:0003056!2.21e-07!61;UBERON:0007625!4.02e-07!11;UBERON:0002616!6.87e-07!59 | ||
|ontology_enrichment_uberon_v019=UBERON:0007625;9.19e-19;11!UBERON:0000488;3.36e-18;4!UBERON:0001801;1.61e-14;14!UBERON:0001778;3.37e-14;3!UBERON:0001775;3.37e-14;3!UBERON:0002203;3.74e-12;6!UBERON:0001768;3.74e-12;6!UBERON:0002200;3.74e-12;6!UBERON:0000020;7.87e-11;23!UBERON:0000019;2.01e-10;19!UBERON:0000047;2.01e-10;19!UBERON:0004088;2.01e-10;19!UBERON:0010230;2.01e-10;19!UBERON:0010077;2.47e-10;4!UBERON:0005389;2.47e-10;4!UBERON:0000484;2.47e-10;4!UBERON:0000965;2.47e-10;4!UBERON:0001803;2.47e-10;4!UBERON:0001032;2.53e-10;24!UBERON:0004456;2.53e-10;24!UBERON:0006876;6.51e-10;11!UBERON:0000970;7.52e-10;20!UBERON:0010371;1.01e-09;31!UBERON:0002104;2.48e-09;21!UBERON:0001456;2.48e-09;21!UBERON:0000058;5.98e-07;10 | |ontology_enrichment_uberon_v019=UBERON:0007625;9.19e-19;11!UBERON:0000488;3.36e-18;4!UBERON:0001801;1.61e-14;14!UBERON:0001778;3.37e-14;3!UBERON:0001775;3.37e-14;3!UBERON:0002203;3.74e-12;6!UBERON:0001768;3.74e-12;6!UBERON:0002200;3.74e-12;6!UBERON:0000020;7.87e-11;23!UBERON:0000019;2.01e-10;19!UBERON:0000047;2.01e-10;19!UBERON:0004088;2.01e-10;19!UBERON:0010230;2.01e-10;19!UBERON:0010077;2.47e-10;4!UBERON:0005389;2.47e-10;4!UBERON:0000484;2.47e-10;4!UBERON:0000965;2.47e-10;4!UBERON:0001803;2.47e-10;4!UBERON:0001032;2.53e-10;24!UBERON:0004456;2.53e-10;24!UBERON:0006876;6.51e-10;11!UBERON:0000970;7.52e-10;20!UBERON:0010371;1.01e-09;31!UBERON:0002104;2.48e-09;21!UBERON:0001456;2.48e-09;21!UBERON:0000058;5.98e-07;10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,8.03e-19,11;UBERON:0000488,2.62e-18,4;UBERON:0001801,1.45e-14,14;UBERON:0001778,2.86e-14,3;UBERON:0001775,2.86e-14,3;UBERON:0002203,3.18e-12,6;UBERON:0001768,3.18e-12,6;UBERON:0002200,3.18e-12,6;UBERON:0010077,2.52e-10,4;UBERON:0005389,2.52e-10,4;UBERON:0000484,2.52e-10,4;UBERON:0002546,2.52e-10,4;UBERON:0000965,2.52e-10,4;UBERON:0001803,2.52e-10,4;UBERON:0003073,2.52e-10,4;UBERON:0005426,2.52e-10,4;UBERON:0000020,2.86e-10,24;UBERON:0001032,2.86e-10,24;UBERON:0004456,2.86e-10,24;UBERON:0006876,5.53e-10,11;UBERON:0000019,7.00e-10,20;UBERON:0000047,7.00e-10,20;UBERON:0010312,7.00e-10,20;UBERON:0004088,7.00e-10,20;UBERON:0010230,7.00e-10,20;UBERON:0003072,7.00e-10,20;UBERON:0004128,7.00e-10,20;UBERON:0003071,7.00e-10,20;UBERON:0000970,2.32e-09,21;UBERON:0002104,2.32e-09,21;UBERON:0001456,6.89e-09,22;UBERON:0005085,7.85e-08,31;UBERON:0000490,1.54e-07,148 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0,0,0,0,0,0,0.522371256399677,0.982935746006035,0,0,0,0,0,0,0,0,0.487932798790507,0.246242116153576,0.408001382488506,0.940364164434263,0.572471974262113,0.136874425072884,2.13422487311165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,0.50133791063589,0.724232594804119,0,0,2.83604451492204,5.5432349365641,5.27008714158756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,1.62028389576352,0,0,0,0,0,0,0,0,0,0,0.633152558322899,0.397227542439656,0.860509862246441,0,0,3.20246987189115,1.72667283892012,0,0.269421344139376,0,0.302714855289863,0,0,0.312160076830321,0,0,0,0,0,0.204154171254893,0.122834317311768,0.103325781175765,0,0.989067717114227,0,0.718618141816238,0,0,0,0.438977620880838,0,0.45071417671979,0.113432183160021,0.358779271377724,0,0,0,0,0,0,0,0,0,0,0,0,0.201504196455281,0,0.386521706326594,0,0.286804595389004,0,0.132529768321485,0.116193942869518,0,0,0,0,3.21620469096443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,2.57351715447788,0.98775256867763,0,0.100528972411631,0,0,0,8.6598805215164,1.507095264676,2.11335649624479,0,0,0.951270761172991,0.790204397959275,0,0,0,0,0.93733833986777,1.17587489739202,0.141775097242386,0.447792613514241,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0.87192013766656,0.36669142910475,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.57191197463259,0,0,0,1.42156779497018,0,0,0,0.599837947092342,0,0,0,0.718874566474748,1.14861935834114,0,0.144781306667579,0.61642896765115,0,0,0,0,0,0,0,0,0,0,0,0,0,0.36807447515742,0,0,1.03985430765404,1.42743191037729,1.10391690523754,0.117141414992713,0,0,0,0.664225598535437,0.184369168541703,0,0.979005787313703,0.686286847621712,0,0,0,0,0,0,0,0,0,0,0,0.321707842287215,0,0,0,0,0,0,0,1.80455823272956,0.276242966807689,0.229628896329213,0.364182336013434,0.131124414959424,0,0.462092022626489,0,0,0.316654886678627,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0,0.656029291399411,0.976135183992909,0,0.0915694648183434,0.247528499761764,0,0,3.21367859688319,0.096670718292122,0.154048617114644,0,0.137836572484531,0.107420244868274,0,0.0852266274161009,0.267096106940212,0.165284915360978,0.192190067365106,0.127612712494584,0,0.464845549297286,1.25924938732256,0,0.616067160352178,0,0,0,0.572499546967965,2.60510858551767,0.316379424718726,0.953150969619124,0,0,0,0,0,0.274537029736055,0.117812402345686,0,0,0.421258456238981,0,1.21856744815642,0,0.136499911407986,0.565621727814851,1.13008116620243,0,0.66343897524122,1.31535265576129,0,0,0.202910376962704,0.30982349809975,0,0.286822704408103,1.76848273823618,0.35667105148125,0,0,0,0,0.699869440489966,0.192444225451024,0,0,0.0941438007767792,0,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70481688083848,0,0.593929361665277,0,0,0.562677665642051,0,0,2.53350489753592,0,0.276283915531148,0,0.102268682502155,0,2.48831670129446,0.718946809178615,0.358042349351218,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0.174919999992391,0.724999575434793,0.227586896570999,0.508507300585533,0,0,0,0,0,0.361789315876224,0,0.110579259931225,0,0.438770794307945,0,0.139423744278603,0.230850775511391,1.82307289355202,0,0,0,0.31900115973192,0.366390373607449,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0.234264445725339,0,0,0,0.394584402849391,0,0.61214552326098,0,0,0,0,0,0.313932918407225,1.19472429772959,0,0,0,0.0979923974143777,0.435296032902013,0.34945333648406,0.343972064943233,0,0.0730893170861856,0.0821154570532092,0,0,0,0.411125773940253,0,0.189932387867636,0,4.32857629358282,0,0.599428828746391,0,1.25990255782507,0.171594997861965,0,0,0,0.67952103036807,0.627617077873999,2.85595009381701,0.288950589901519,0,0.273810757783986,0,0.859530882839914,0,0,0.458320848023367,0,0,0,0,0,0.360299883542404,0,0,0,0,0.0984274815147488,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,0,0,0,1.6135860539956,0,0,0,0,0.542999601753713,0,0,0,0,0.681552087141687,0.453248366080503,0,0,0.129282956361551,0.26446520348538,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0.638341257770182,0,0,0,0,0.157054096250234,0,0.244052529803926,0.250381861413,0,0.443716206147409,0.124192805882767,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0.251567901752575,0,0.686520205190771,0.151230923763239,0,0.591420599958536,0.477890301491107,0.449803112163605,0.310525913752519,0.414706207840855,0.53168342911599,1.5652351854352,0.300515217994437,0.761610424337591,0.406870733204662,0.727394636810238,0.322231671127465,0,1.19428766609585,1.20008329398946,0,0,0,0.192619830407303,0,0.521988583930423,0.906823702049089,0.231522474323834,0.244736704506468,1.96997725189636,0,0.219284049578707,0.353378291891762,0,0.168942440653073,0,0.69086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| ||
|short_description=p13@TGFB2 | |short_description=p13@TGFB2 | ||
}} | }} |
Latest revision as of 04:47, 25 September 2015
Short description: | p13@TGFB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_13_at_TGFB2_5end |
Coexpression cluster: | C3939_Lens_Ciliary_anaplastic_mesothelioma_osteoclastoma_pharyngeal_Fibroblast |
Association with transcript: | -451bp_to_AK021874_5end |
EntrezGene: | TGFB2 |
HGNC: | 11768 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ciliated cell | 2.86e-14 | 3 |
ciliated epithelial cell | 2.86e-14 | 3 |
multi-ciliated epithelial cell | 2.86e-14 | 3 |
non-pigmented ciliary epithelial cell | 2.86e-14 | 3 |
columnar/cuboidal epithelial cell | 4.17e-11 | 27 |
crystallin accumulating cell | 2.52e-10 | 4 |
vertebrate lens cell | 2.52e-10 | 4 |
lens epithelial cell | 2.52e-10 | 4 |
neurecto-epithelial cell | 5.53e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 8.03e-19 | 11 |
atypical epithelium | 2.62e-18 | 4 |
anterior segment of eyeball | 1.45e-14 | 14 |
ciliary epithelium | 2.86e-14 | 3 |
ciliary body | 2.86e-14 | 3 |
vasculature of eye | 3.18e-12 | 6 |
uvea | 3.18e-12 | 6 |
vasculature of head | 3.18e-12 | 6 |
cuboidal epithelium | 2.52e-10 | 4 |
transparent eye structure | 2.52e-10 | 4 |
simple cuboidal epithelium | 2.52e-10 | 4 |
cranial placode | 2.52e-10 | 4 |
lens of camera-type eye | 2.52e-10 | 4 |
epithelium of lens | 2.52e-10 | 4 |
lens placode | 2.52e-10 | 4 |
lens vesicle | 2.52e-10 | 4 |
sense organ | 2.86e-10 | 24 |
sensory system | 2.86e-10 | 24 |
entire sense organ system | 2.86e-10 | 24 |
vasculature of organ | 5.53e-10 | 11 |
camera-type eye | 7.00e-10 | 20 |
simple eye | 7.00e-10 | 20 |
immature eye | 7.00e-10 | 20 |
ocular region | 7.00e-10 | 20 |
eyeball of camera-type eye | 7.00e-10 | 20 |
optic cup | 7.00e-10 | 20 |
optic vesicle | 7.00e-10 | 20 |
eye primordium | 7.00e-10 | 20 |
eye | 2.32e-09 | 21 |
visual system | 2.32e-09 | 21 |
face | 6.89e-09 | 22 |
ectodermal placode | 7.85e-08 | 31 |
unilaminar epithelium | 1.54e-07 | 148 |