FFCP PHASE1:Hg19::chr17:39680672..39680701,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3880 | |EntrezGene=3880 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6436 | |HGNC=6436 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=197bp_to_ENST00000471565_5end | |association_with_transcript=197bp_to_ENST00000471565_5end | ||
|cluster_id=chr17:39680672..39680701,- | |||
|coexpression_cluster_id=C2407 | |coexpression_cluster_id=C2407 | ||
|description=CAGE_peak_4_at_KRT19_5end | |description=CAGE_peak_4_at_KRT19_5end | ||
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|ontology_enrichment_celltype=CL:0000066!8.50e-33!254;CL:0002076!2.14e-19!43;CL:0000223!4.78e-16!59;CL:0002368!1.77e-14!13;CL:0002202!2.61e-10!9;CL:0002632!2.61e-10!9;CL:0000082!4.38e-08!19;CL:0002321!1.32e-07!248;CL:0000220!1.80e-07!246;CL:1000497!2.39e-07!18;CL:0002518!2.39e-07!18 | |ontology_enrichment_celltype=CL:0000066!8.50e-33!254;CL:0002076!2.14e-19!43;CL:0000223!4.78e-16!59;CL:0002368!1.77e-14!13;CL:0002202!2.61e-10!9;CL:0002632!2.61e-10!9;CL:0000082!4.38e-08!19;CL:0002321!1.32e-07!248;CL:0000220!1.80e-07!246;CL:1000497!2.39e-07!18;CL:0002518!2.39e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0002368;6.91e-20;13!CL:0002202;2.49e-13;9!CL:0002632;2.49e-13;9!CL:0002076;8.69e-13;42!CL:0002328;1.87e-11;3!CL:0000349;1.46e-10;19!CL:0000077;1.64e-09;19!CL:0002537;8.07e-07;5 | |ontology_enrichment_celltype_v019=CL:0002368;6.91e-20;13!CL:0002202;2.49e-13;9!CL:0002632;2.49e-13;9!CL:0002076;8.69e-13;42!CL:0002328;1.87e-11;3!CL:0000349;1.46e-10;19!CL:0000077;1.64e-09;19!CL:0002537;8.07e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002368,6.39e-20,13;CL:0002076,1.30e-18,42;CL:0000066,4.19e-18,253;CL:0002202,3.08e-13,9;CL:0002632,3.08e-13,9;CL:0000223,2.53e-12,58;CL:0002328,1.95e-11,3;CL:0000349,1.52e-10,19;CL:0000077,1.67e-09,19;CL:0000076,8.76e-07,63;CL:0002537,9.29e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;3.08e-07;58 | |ontology_enrichment_development_v019=CL:0000223;3.08e-07;58 | ||
|ontology_enrichment_disease=DOID:305!2.53e-17!106;DOID:0050687!2.51e-13!143;DOID:299!1.03e-11!25;DOID:162!1.83e-08!235;DOID:14566!7.21e-08!239;DOID:1749!8.03e-07!14 | |ontology_enrichment_disease=DOID:305!2.53e-17!106;DOID:0050687!2.51e-13!143;DOID:299!1.03e-11!25;DOID:162!1.83e-08!235;DOID:14566!7.21e-08!239;DOID:1749!8.03e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:5093;1.14e-08;4!DOID:1612;1.14e-08;4 | |ontology_enrichment_disease_v019=DOID:5093;1.14e-08;4!DOID:1612;1.14e-08;4 | ||
|ontology_enrichment_disease_v019_2=DOID:5093,9.80e-09,4;DOID:1612,9.80e-09,4 | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.79e-15,14;UBERON:0000158,7.79e-15,14;UBERON:0004815,1.95e-11,3;UBERON:0002031,1.95e-11,3;UBERON:0003124,2.25e-08,7;UBERON:0000305,4.40e-08,7;UBERON:0000478,4.76e-08,24;UBERON:0007196,1.19e-07,15;UBERON:0001558,1.19e-07,15;UBERON:0004871,4.55e-07,8;UBERON:0009569,4.82e-07,112;UBERON:0002185,5.33e-07,5;UBERON:0000915,8.32e-07,52 | |||
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| ||
|short_description=p4@KRT19 | |short_description=p4@KRT19 | ||
}} | }} |
Latest revision as of 05:56, 20 September 2015
Short description: | p4@KRT19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_KRT19_5end |
Coexpression cluster: | C2407_Alveolar_Tracheal_Small_Bronchial_MCF7_Amniotic_Renal |
Association with transcript: | 197bp_to_ENST00000471565_5end |
EntrezGene: | KRT19 |
HGNC: | 6436 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 6.39e-20 | 13 |
endo-epithelial cell | 1.30e-18 | 42 |
epithelial cell | 4.19e-18 | 253 |
epithelial cell of tracheobronchial tree | 3.08e-13 | 9 |
epithelial cell of lower respiratory tract | 3.08e-13 | 9 |
endodermal cell | 2.53e-12 | 58 |
bronchial epithelial cell | 1.95e-11 | 3 |
extraembryonic cell | 1.52e-10 | 19 |
mesothelial cell | 1.67e-09 | 19 |
squamous epithelial cell | 8.76e-07 | 63 |
amnion mesenchymal stem cell | 9.29e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.79e-15 | 14 |
membranous layer | 7.79e-15 | 14 |
lower respiratory tract epithelium | 1.95e-11 | 3 |
epithelium of bronchus | 1.95e-11 | 3 |
chorion | 2.25e-08 | 7 |
amnion | 4.40e-08 | 7 |
extraembryonic structure | 4.76e-08 | 24 |
tracheobronchial tree | 1.19e-07 | 15 |
lower respiratory tract | 1.19e-07 | 15 |
somatic layer of lateral plate mesoderm | 4.55e-07 | 8 |
subdivision of trunk | 4.82e-07 | 112 |
bronchus | 5.33e-07 | 5 |
thoracic segment of trunk | 8.32e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 9.80e-09 | 4 |
breast cancer | 9.80e-09 | 4 |