FFCP PHASE1:Hg19::chr22:31608219..31608303,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:31608219..31608303,+
|short_description=p1@LIMK2
|description=CAGE_peak_1_at_LIMK2_5end
|association_with_transcript=0bp_to_ENST00000331728,ENST0000040651...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3985 | |EntrezGene=3985 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6614 | |HGNC=6614 | ||
|TSSclassifier=strong | |||
|UniProt=P53671,B5MC51,E7EUC1,Q7L3H5 | |UniProt=P53671,B5MC51,E7EUC1,Q7L3H5 | ||
|association_with_transcript=0bp_to_ENST00000331728,ENST00000406516,ENST00000444929,ENST00000462625,NM_005569,uc003akg.2,uc003akh.2,uc003aki.2_5end | |||
|cluster_id=chr22:31608219..31608303,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_1_at_LIMK2_5end | |||
|id=chr22:31608219..31608303,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.89e-16!42;CL:0000115!9.29e-16!35;CL:0000860!1.66e-14!45;CL:0002139!1.14e-13!24;CL:0000037!2.86e-13!172;CL:0000566!2.86e-13!172;CL:0002032!3.46e-13!165;CL:0000837!3.46e-13!165;CL:0002078!3.97e-13!44;CL:0000766!9.79e-13!76;CL:0000738!1.32e-12!140;CL:0000988!3.18e-12!182;CL:0000763!1.33e-11!112;CL:0000049!1.33e-11!112;CL:0002087!1.43e-11!119;CL:0002031!4.59e-11!124;CL:0000071!6.91e-11!18;CL:0002546!6.91e-11!18;CL:0002009!2.82e-10!65;CL:0002194!3.27e-10!63;CL:0000576!3.27e-10!63;CL:0000040!3.27e-10!63;CL:0000559!3.27e-10!63;CL:0000557!5.87e-10!71;CL:0000839!7.01e-10!70;CL:0000213!3.57e-09!57;CL:0000215!3.57e-09!57 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.01e-17;33!CL:0002057;1.01e-17;33!CL:0000115;9.12e-14;36!CL:0002139;1.05e-13;24!CL:0000473;1.97e-13;39!CL:0000234;1.97e-13;39!CL:0000071;6.54e-11;18!CL:0000576;9.11e-11;48!CL:0002078;5.07e-09;45!CL:0000766;1.16e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.89e-16,42;CL:0002057,1.89e-16,42;CL:0000115,2.82e-16,36;CL:0000473,6.50e-15,48;CL:0000234,6.50e-15,48;CL:0000766,1.51e-14,72;CL:0000037,2.30e-14,168;CL:0002032,2.65e-14,161;CL:0000837,2.65e-14,161;CL:0000738,8.34e-14,136;CL:0002139,1.14e-13,24;CL:0002078,1.30e-13,45;CL:0000763,6.57e-13,108;CL:0000049,6.57e-13,108;CL:0000988,7.02e-13,177;CL:0002087,8.01e-13,115;CL:0002031,3.01e-12,120;CL:0002009,5.27e-12,61;CL:0002194,5.69e-12,59;CL:0000576,5.69e-12,59;CL:0000040,5.69e-12,59;CL:0000559,5.69e-12,59;CL:0000557,1.52e-11,67;CL:0000839,1.78e-11,66;CL:0000071,6.91e-11,18;CL:0002546,6.91e-11,18;CL:0000213,1.40e-09,58;CL:0000215,1.40e-09,58 | |||
|ontology_enrichment_development_v019=CL:0002057;1.28e-12;42!CL:0002546;6.54e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.09e-15!112;UBERON:0002390!7.28e-13!102;UBERON:0003061!7.28e-13!102;UBERON:0002405!8.14e-13!115;UBERON:0001986!6.91e-11!18;UBERON:0004638!6.91e-11!18;UBERON:0004852!6.91e-11!18;UBERON:0000487!3.97e-09!22;UBERON:0003081!1.51e-08!216;UBERON:0007023!1.95e-08!115;UBERON:0002371!1.39e-07!80;UBERON:0006914!3.69e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;6.54e-11;18!UBERON:0001986;6.54e-11;18!UBERON:0004852;6.54e-11;18!UBERON:0000487;4.84e-09;22!UBERON:0006914;4.13e-07;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.70e-16,108;UBERON:0002390,2.35e-14,98;UBERON:0003061,2.35e-14,98;UBERON:0002405,4.67e-12,93;UBERON:0004638,6.91e-11,18;UBERON:0001986,6.91e-11,18;UBERON:0004852,6.91e-11,18;UBERON:0000487,3.97e-09,22;UBERON:0002371,8.78e-09,76;UBERON:0003081,1.65e-08,203;UBERON:0007023,1.85e-08,114;UBERON:0006914,3.69e-07,25;UBERON:0001474,4.43e-07,82 | |||
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| ||
|short_description=p1@LIMK2 | |||
}} | }} |
Latest revision as of 19:48, 19 September 2015
Short description: | p1@LIMK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIMK2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | 0bp_to_ENST00000331728, ENST00000406516, ENST00000444929, ENST00000462625, NM_005569, uc003akg.2, uc003akh.2, uc003aki.2_5end |
EntrezGene: | LIMK2 |
HGNC: | 6614 |
UniProt: | P53671B5MC51E7EUC1Q7L3H5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.89e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.89e-16 | 42 |
endothelial cell | 2.82e-16 | 36 |
defensive cell | 6.50e-15 | 48 |
phagocyte | 6.50e-15 | 48 |
myeloid leukocyte | 1.51e-14 | 72 |
hematopoietic stem cell | 2.30e-14 | 168 |
hematopoietic oligopotent progenitor cell | 2.65e-14 | 161 |
hematopoietic multipotent progenitor cell | 2.65e-14 | 161 |
leukocyte | 8.34e-14 | 136 |
endothelial cell of vascular tree | 1.14e-13 | 24 |
meso-epithelial cell | 1.30e-13 | 45 |
myeloid cell | 6.57e-13 | 108 |
common myeloid progenitor | 6.57e-13 | 108 |
hematopoietic cell | 7.02e-13 | 177 |
nongranular leukocyte | 8.01e-13 | 115 |
hematopoietic lineage restricted progenitor cell | 3.01e-12 | 120 |
macrophage dendritic cell progenitor | 5.27e-12 | 61 |
monopoietic cell | 5.69e-12 | 59 |
monocyte | 5.69e-12 | 59 |
monoblast | 5.69e-12 | 59 |
promonocyte | 5.69e-12 | 59 |
granulocyte monocyte progenitor cell | 1.52e-11 | 67 |
myeloid lineage restricted progenitor cell | 1.78e-11 | 66 |
blood vessel endothelial cell | 6.91e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 6.91e-11 | 18 |
lining cell | 1.40e-09 | 58 |
barrier cell | 1.40e-09 | 58 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.70e-16 | 108 |
hematopoietic system | 2.35e-14 | 98 |
blood island | 2.35e-14 | 98 |
immune system | 4.67e-12 | 93 |
blood vessel endothelium | 6.91e-11 | 18 |
endothelium | 6.91e-11 | 18 |
cardiovascular system endothelium | 6.91e-11 | 18 |
simple squamous epithelium | 3.97e-09 | 22 |
bone marrow | 8.78e-09 | 76 |
lateral plate mesoderm | 1.65e-08 | 203 |
adult organism | 1.85e-08 | 114 |
squamous epithelium | 3.69e-07 | 25 |
bone element | 4.43e-07 | 82 |