FFCP PHASE1:Hg19::chr19:9965051..9965063,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:9965051..9965063,- | |||
|coexpression_cluster_id=C1245 | |coexpression_cluster_id=C1245 | ||
|description=CAGE_peak_at_chr19:9965051..9965063,- | |description=CAGE_peak_at_chr19:9965051..9965063,- | ||
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|ontology_enrichment_celltype=CL:0000136!1.88e-09!15;CL:0000540!1.63e-07!6;CL:0000031!1.63e-07!6;CL:0000404!1.63e-07!6;CL:0000047!6.48e-07!8 | |ontology_enrichment_celltype=CL:0000136!1.88e-09!15;CL:0000540!1.63e-07!6;CL:0000031!1.63e-07!6;CL:0000404!1.63e-07!6;CL:0000047!6.48e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000540;5.49e-21;6!CL:0000404;5.49e-21;6!CL:0002521;1.67e-11;3!CL:0002322;1.96e-11;5!CL:0002319;4.18e-07;25 | |ontology_enrichment_celltype_v019=CL:0000540;5.49e-21;6!CL:0000404;5.49e-21;6!CL:0002521;1.67e-11;3!CL:0002322;1.96e-11;5!CL:0002319;4.18e-07;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.50e-21,6;CL:0000031,1.50e-21,6;CL:0000404,1.50e-21,6;CL:0000047,5.49e-16,8;CL:0002521,1.78e-11,3;CL:0002322,1.97e-11,5;CL:0002319,2.99e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000031;5.49e-21;6 | |ontology_enrichment_development_v019=CL:0000031;5.49e-21;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.97e-24!82;UBERON:0005743!2.95e-24!86;UBERON:0000073!1.26e-23!94;UBERON:0001016!1.26e-23!94;UBERON:0001049!9.06e-23!57;UBERON:0005068!9.06e-23!57;UBERON:0006241!9.06e-23!57;UBERON:0007135!9.06e-23!57;UBERON:0002020!1.15e-18!34;UBERON:0003528!1.15e-18!34;UBERON:0002346!1.50e-18!90;UBERON:0002616!1.78e-18!59;UBERON:0001893!2.30e-18!34;UBERON:0002780!6.95e-18!41;UBERON:0001890!6.95e-18!41;UBERON:0006240!6.95e-18!41;UBERON:0001869!9.09e-18!32;UBERON:0002791!1.08e-17!33;UBERON:0000955!1.26e-17!69;UBERON:0006238!1.26e-17!69;UBERON:0003080!3.60e-17!42;UBERON:0003075!3.73e-16!86;UBERON:0007284!3.73e-16!86;UBERON:0000956!6.04e-16!25;UBERON:0000203!6.04e-16!25;UBERON:0001950!4.33e-14!20;UBERON:0002619!9.88e-14!22;UBERON:0000924!2.98e-13!173;UBERON:0006601!2.98e-13!173;UBERON:0003056!5.11e-12!61;UBERON:0004121!1.52e-11!169;UBERON:0007023!3.97e-11!115;UBERON:0000033!1.13e-09!123;UBERON:0000153!2.42e-09!129;UBERON:0007811!2.42e-09!129;UBERON:0003076!7.99e-07!15;UBERON:0003057!7.99e-07!15 | |ontology_enrichment_uberon=UBERON:0001017!1.97e-24!82;UBERON:0005743!2.95e-24!86;UBERON:0000073!1.26e-23!94;UBERON:0001016!1.26e-23!94;UBERON:0001049!9.06e-23!57;UBERON:0005068!9.06e-23!57;UBERON:0006241!9.06e-23!57;UBERON:0007135!9.06e-23!57;UBERON:0002020!1.15e-18!34;UBERON:0003528!1.15e-18!34;UBERON:0002346!1.50e-18!90;UBERON:0002616!1.78e-18!59;UBERON:0001893!2.30e-18!34;UBERON:0002780!6.95e-18!41;UBERON:0001890!6.95e-18!41;UBERON:0006240!6.95e-18!41;UBERON:0001869!9.09e-18!32;UBERON:0002791!1.08e-17!33;UBERON:0000955!1.26e-17!69;UBERON:0006238!1.26e-17!69;UBERON:0003080!3.60e-17!42;UBERON:0003075!3.73e-16!86;UBERON:0007284!3.73e-16!86;UBERON:0000956!6.04e-16!25;UBERON:0000203!6.04e-16!25;UBERON:0001950!4.33e-14!20;UBERON:0002619!9.88e-14!22;UBERON:0000924!2.98e-13!173;UBERON:0006601!2.98e-13!173;UBERON:0003056!5.11e-12!61;UBERON:0004121!1.52e-11!169;UBERON:0007023!3.97e-11!115;UBERON:0000033!1.13e-09!123;UBERON:0000153!2.42e-09!129;UBERON:0007811!2.42e-09!129;UBERON:0003076!7.99e-07!15;UBERON:0003057!7.99e-07!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.76e-14;20!UBERON:0000956;7.61e-14;25!UBERON:0000203;7.61e-14;25!UBERON:0002619;4.78e-13;22!UBERON:0002791;5.87e-12;32!UBERON:0001869;1.59e-11;32!UBERON:0002190;1.67e-11;3!UBERON:0001893;4.26e-11;34!UBERON:0003528;7.41e-11;34!UBERON:0002020;7.41e-11;34!UBERON:0000200;1.78e-09;6!UBERON:0002346;8.22e-09;4!UBERON:0000923;8.22e-09;4!UBERON:0010316;8.22e-09;4!UBERON:0005291;8.22e-09;4!UBERON:0002702;1.23e-07;2!UBERON:0002780;2.03e-07;41!UBERON:0001890;2.03e-07;41!UBERON:0002050;4.04e-07;5!UBERON:0005423;4.04e-07;5!UBERON:0002072;4.72e-07;5!UBERON:0000922;6.38e-07;49!UBERON:0001872;9.72e-07;5 | |ontology_enrichment_uberon_v019=UBERON:0001950;1.76e-14;20!UBERON:0000956;7.61e-14;25!UBERON:0000203;7.61e-14;25!UBERON:0002619;4.78e-13;22!UBERON:0002791;5.87e-12;32!UBERON:0001869;1.59e-11;32!UBERON:0002190;1.67e-11;3!UBERON:0001893;4.26e-11;34!UBERON:0003528;7.41e-11;34!UBERON:0002020;7.41e-11;34!UBERON:0000200;1.78e-09;6!UBERON:0002346;8.22e-09;4!UBERON:0000923;8.22e-09;4!UBERON:0010316;8.22e-09;4!UBERON:0005291;8.22e-09;4!UBERON:0002702;1.23e-07;2!UBERON:0002780;2.03e-07;41!UBERON:0001890;2.03e-07;41!UBERON:0002050;4.04e-07;5!UBERON:0005423;4.04e-07;5!UBERON:0002072;4.72e-07;5!UBERON:0000922;6.38e-07;49!UBERON:0001872;9.72e-07;5 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.39e-16,81;UBERON:0001016,1.79e-15,89;UBERON:0001950,2.65e-14,20;UBERON:0000956,1.09e-13,25;UBERON:0000203,1.09e-13,25;UBERON:0002619,6.92e-13,22;UBERON:0002791,2.41e-12,32;UBERON:0001869,2.41e-12,32;UBERON:0003528,1.72e-11,34;UBERON:0002020,1.72e-11,34;UBERON:0001893,1.72e-11,34;UBERON:0002190,1.78e-11,3;UBERON:0002780,9.32e-11,41;UBERON:0001890,9.32e-11,41;UBERON:0003080,9.32e-11,41;UBERON:0006240,9.32e-11,41;UBERON:0004121,1.66e-10,171;UBERON:0000924,1.66e-10,171;UBERON:0006601,1.66e-10,171;UBERON:0000955,6.12e-10,68;UBERON:0006238,6.12e-10,68;UBERON:0002346,1.08e-09,86;UBERON:0000200,2.34e-09,6;UBERON:0000073,3.39e-09,53;UBERON:0002616,3.39e-09,53;UBERON:0001049,1.49e-08,56;UBERON:0005068,1.49e-08,56;UBERON:0006241,1.49e-08,56;UBERON:0007135,1.49e-08,56;UBERON:0005253,3.54e-08,2;UBERON:0002702,1.08e-07,2;UBERON:0003056,1.51e-07,61;UBERON:0002072,4.89e-07,5;UBERON:0003075,7.55e-07,82;UBERON:0007284,7.55e-07,82 | |||
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| ||
|short_description=p@chr19:9965051..9965063,- | |short_description=p@chr19:9965051..9965063,- | ||
}} | }} |
Latest revision as of 18:51, 27 July 2015
Short description: | p@chr19:9965051..9965063, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:9965051..9965063, - |
Coexpression cluster: | C1245_normal_Neurons_parietal_temporal_neuroectodermal_occipital_basal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.50e-21 | 6 |
neuroblast | 1.50e-21 | 6 |
electrically signaling cell | 1.50e-21 | 6 |
neuronal stem cell | 5.49e-16 | 8 |
subcutaneous fat cell | 1.78e-11 | 3 |
embryonic stem cell | 1.97e-11 | 5 |
neural cell | 2.99e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.39e-16 | 81 |
nervous system | 1.79e-15 | 89 |
neocortex | 2.65e-14 | 20 |
cerebral cortex | 1.09e-13 | 25 |
pallium | 1.09e-13 | 25 |
regional part of cerebral cortex | 6.92e-13 | 22 |
regional part of telencephalon | 2.41e-12 | 32 |
cerebral hemisphere | 2.41e-12 | 32 |
brain grey matter | 1.72e-11 | 34 |
gray matter | 1.72e-11 | 34 |
telencephalon | 1.72e-11 | 34 |
subcutaneous adipose tissue | 1.78e-11 | 3 |
regional part of forebrain | 9.32e-11 | 41 |
forebrain | 9.32e-11 | 41 |
anterior neural tube | 9.32e-11 | 41 |
future forebrain | 9.32e-11 | 41 |
ectoderm-derived structure | 1.66e-10 | 171 |
ectoderm | 1.66e-10 | 171 |
presumptive ectoderm | 1.66e-10 | 171 |
brain | 6.12e-10 | 68 |
future brain | 6.12e-10 | 68 |
neurectoderm | 1.08e-09 | 86 |
gyrus | 2.34e-09 | 6 |
regional part of nervous system | 3.39e-09 | 53 |
regional part of brain | 3.39e-09 | 53 |
neural tube | 1.49e-08 | 56 |
neural rod | 1.49e-08 | 56 |
future spinal cord | 1.49e-08 | 56 |
neural keel | 1.49e-08 | 56 |
head mesenchyme | 3.54e-08 | 2 |
middle frontal gyrus | 1.08e-07 | 2 |
pre-chordal neural plate | 1.51e-07 | 61 |
hypodermis | 4.89e-07 | 5 |
neural plate | 7.55e-07 | 82 |
presumptive neural plate | 7.55e-07 | 82 |