FFCP PHASE1:Hg19::chr15:55563100..55563135,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5873 | |EntrezGene=5873 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9766 | |HGNC=9766 | ||
|TSSclassifier=strong | |||
|UniProt=A2RU94,P51159 | |UniProt=A2RU94,P51159 | ||
|association_with_transcript=0bp_to_NM_183236,uc002acq.2_5end | |association_with_transcript=0bp_to_NM_183236,uc002acq.2_5end | ||
|cluster_id=chr15:55563100..55563135,- | |||
|coexpression_cluster_id=C58 | |coexpression_cluster_id=C58 | ||
|description=CAGE_peak_4_at_RAB27A_5end | |description=CAGE_peak_4_at_RAB27A_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000147!1.77e-22!14;CL:0000148!6.01e-16!10;CL:0000541!6.01e-16!10;CL:0000710!1.21e-11!20;CL:0000149!2.02e-08!4;CL:0000075!3.63e-08!27 | |ontology_enrichment_celltype=CL:0000147!1.77e-22!14;CL:0000148!6.01e-16!10;CL:0000541!6.01e-16!10;CL:0000710!1.21e-11!20;CL:0000149!2.02e-08!4;CL:0000075!3.63e-08!27 | ||
|ontology_enrichment_celltype_v019=CL:0000147;2.64e-69;14!CL:0000148;2.60e-55;10!CL:0000149;8.49e-35;4!CL:0000710;1.19e-27;20!CL:0002567;1.59e-21;3!CL:0002586;4.46e-21;3!CL:0000075;1.86e-20;27!CL:0002566;5.53e-17;1!CL:0002077;3.01e-15;34 | |ontology_enrichment_celltype_v019=CL:0000147;2.64e-69;14!CL:0000148;2.60e-55;10!CL:0000149;8.49e-35;4!CL:0000710;1.19e-27;20!CL:0002567;1.59e-21;3!CL:0002586;4.46e-21;3!CL:0000075;1.86e-20;27!CL:0002566;5.53e-17;1!CL:0002077;3.01e-15;34 | ||
|ontology_enrichment_celltype_v019_2=CL:0000147,2.64e-69,14;CL:0000148,2.61e-55,10;CL:0000541,2.61e-55,10;CL:0000149,8.49e-35,4;CL:0000710,1.19e-27,20;CL:0002567,1.59e-21,3;CL:0002586,4.46e-21,3;CL:0000075,1.86e-20,27;CL:0002566,5.53e-17,1;CL:0002077,3.27e-16,34;CL:0000333,8.90e-13,41;CL:0000133,6.24e-09,59;CL:0000221,2.61e-07,72 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1909!5.66e-08!2 | |ontology_enrichment_disease=DOID:1909!5.66e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:1909;2.54e-31;2 | |ontology_enrichment_disease_v019=DOID:1909;2.54e-31;2 | ||
|ontology_enrichment_disease_v019_2=DOID:1909,2.18e-31,2 | |||
|ontology_enrichment_uberon=UBERON:0000007!1.06e-07!2;UBERON:0000488!3.13e-07!4;UBERON:0007625!6.19e-07!11;UBERON:0000966!9.73e-07!5;UBERON:0005388!9.73e-07!5;UBERON:0001802!9.73e-07!5 | |ontology_enrichment_uberon=UBERON:0000007!1.06e-07!2;UBERON:0000488!3.13e-07!4;UBERON:0007625!6.19e-07!11;UBERON:0000966!9.73e-07!5;UBERON:0005388!9.73e-07!5;UBERON:0001802!9.73e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.01e-27;5!UBERON:0005388;1.01e-27;5!UBERON:0001802;1.01e-27;5!UBERON:0001781;4.46e-21;3!UBERON:0001782;4.46e-21;3!UBERON:0000007;8.09e-09;2!UBERON:0000019;9.21e-08;19!UBERON:0000047;9.21e-08;19!UBERON:0004088;9.21e-08;19!UBERON:0010230;9.21e-08;19!UBERON:0010371;9.79e-08;31!UBERON:0000970;2.12e-07;20!UBERON:0002104;4.51e-07;21!UBERON:0001456;4.51e-07;21 | |ontology_enrichment_uberon_v019=UBERON:0000966;1.01e-27;5!UBERON:0005388;1.01e-27;5!UBERON:0001802;1.01e-27;5!UBERON:0001781;4.46e-21;3!UBERON:0001782;4.46e-21;3!UBERON:0000007;8.09e-09;2!UBERON:0000019;9.21e-08;19!UBERON:0000047;9.21e-08;19!UBERON:0004088;9.21e-08;19!UBERON:0010230;9.21e-08;19!UBERON:0010371;9.79e-08;31!UBERON:0000970;2.12e-07;20!UBERON:0002104;4.51e-07;21!UBERON:0001456;4.51e-07;21 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,3.13e-23,6;UBERON:0005388,3.13e-23,6;UBERON:0001802,3.13e-23,6;UBERON:0001782,4.46e-21,3;UBERON:0005424,4.46e-21,3;UBERON:0001781,4.51e-16,4;UBERON:0000007,8.74e-09,2;UBERON:0000019,2.12e-07,20;UBERON:0000047,2.12e-07,20;UBERON:0010312,2.12e-07,20;UBERON:0004088,2.12e-07,20;UBERON:0010230,2.12e-07,20;UBERON:0003072,2.12e-07,20;UBERON:0004128,2.12e-07,20;UBERON:0003071,2.12e-07,20;UBERON:0000970,4.51e-07,21;UBERON:0002104,4.51e-07,21;UBERON:0001456,8.96e-07,22 | |||
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| ||
|short_description=p4@RAB27A | |short_description=p4@RAB27A | ||
}} | }} |
Latest revision as of 04:06, 18 September 2015
Short description: | p4@RAB27A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_RAB27A_5end |
Coexpression cluster: | C58_Melanocyte_melanoma_retina_Retinal_eye_migratory_H9 |
Association with transcript: | 0bp_to_NM_183236, uc002acq.2_5end |
EntrezGene: | RAB27A |
HGNC: | 9766 |
UniProt: | A2RU94P51159 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pigment cell | 2.64e-69 | 14 |
melanocyte | 2.61e-55 | 10 |
melanoblast | 2.61e-55 | 10 |
visual pigment cell | 8.49e-35 | 4 |
neurecto-epithelial cell | 1.19e-27 | 20 |
light melanocyte | 1.59e-21 | 3 |
retinal pigment epithelial cell | 4.46e-21 | 3 |
columnar/cuboidal epithelial cell | 1.86e-20 | 27 |
dark melanocyte | 5.53e-17 | 1 |
ecto-epithelial cell | 3.27e-16 | 34 |
migratory neural crest cell | 8.90e-13 | 41 |
neurectodermal cell | 6.24e-09 | 59 |
ectodermal cell | 2.61e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
retina | 3.13e-23 | 6 |
photoreceptor array | 3.13e-23 | 6 |
posterior segment of eyeball | 3.13e-23 | 6 |
pigmented layer of retina | 4.46e-21 | 3 |
presumptive retinal pigmented epithelium | 4.46e-21 | 3 |
layer of retina | 4.51e-16 | 4 |
pituitary gland | 8.74e-09 | 2 |
camera-type eye | 2.12e-07 | 20 |
simple eye | 2.12e-07 | 20 |
immature eye | 2.12e-07 | 20 |
ocular region | 2.12e-07 | 20 |
eyeball of camera-type eye | 2.12e-07 | 20 |
optic cup | 2.12e-07 | 20 |
optic vesicle | 2.12e-07 | 20 |
eye primordium | 2.12e-07 | 20 |
eye | 4.51e-07 | 21 |
visual system | 4.51e-07 | 21 |
face | 8.96e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.18e-31 | 2 |