FFCP PHASE1:Hg19::chr17:48264154..48264192,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |EntrezGene=1277 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |HGNC=2197 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000510710_5end | |association_with_transcript=0bp_to_ENST00000510710_5end | ||
|cluster_id=chr17:48264154..48264192,- | |||
|coexpression_cluster_id=C59 | |coexpression_cluster_id=C59 | ||
|description=CAGE_peak_12_at_COL1A1_5end | |description=CAGE_peak_12_at_COL1A1_5end | ||
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|ontology_enrichment_celltype=CL:0000055!5.46e-41!180;CL:0000057!1.56e-24!75;CL:0000183!9.01e-17!59;CL:0000680!2.38e-16!57;CL:0000056!2.38e-16!57;CL:0000355!2.38e-16!57;CL:0000187!7.68e-16!54;CL:0000393!1.20e-13!60;CL:0000211!1.20e-13!60;CL:0000192!2.89e-12!42;CL:0000514!2.89e-12!42;CL:0000048!3.80e-09!430;CL:0002620!4.00e-09!23;CL:0000723!1.56e-08!436;CL:0000359!1.59e-08!32;CL:0000144!1.73e-08!625;CL:0002371!2.24e-08!591;CL:0000034!3.61e-08!444;CL:0002334!7.61e-08!12;CL:0000222!1.22e-07!119;CL:0000499!1.79e-07!27 | |ontology_enrichment_celltype=CL:0000055!5.46e-41!180;CL:0000057!1.56e-24!75;CL:0000183!9.01e-17!59;CL:0000680!2.38e-16!57;CL:0000056!2.38e-16!57;CL:0000355!2.38e-16!57;CL:0000187!7.68e-16!54;CL:0000393!1.20e-13!60;CL:0000211!1.20e-13!60;CL:0000192!2.89e-12!42;CL:0000514!2.89e-12!42;CL:0000048!3.80e-09!430;CL:0002620!4.00e-09!23;CL:0000723!1.56e-08!436;CL:0000359!1.59e-08!32;CL:0000144!1.73e-08!625;CL:0002371!2.24e-08!591;CL:0000034!3.61e-08!444;CL:0002334!7.61e-08!12;CL:0000222!1.22e-07!119;CL:0000499!1.79e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0000134;2.19e-11;55!CL:0000187;4.23e-10;55!CL:0000723;4.39e-10;61!CL:0000057;5.45e-10;73!CL:0000048;7.32e-10;58!CL:0000192;9.33e-10;43!CL:0002320;1.07e-09;188!CL:0002620;4.05e-09;23!CL:0002334;5.82e-09;12!CL:0000359;2.02e-08;32!CL:0000499;3.96e-08;28!CL:0000393;9.90e-08;61!CL:0000211;9.90e-08;61!CL:0000327;3.18e-07;15!CL:0002494;3.30e-07;16!CL:0000034;3.55e-07;69!CL:0002570;5.39e-07;8 | |ontology_enrichment_celltype_v019=CL:0000134;2.19e-11;55!CL:0000187;4.23e-10;55!CL:0000723;4.39e-10;61!CL:0000057;5.45e-10;73!CL:0000048;7.32e-10;58!CL:0000192;9.33e-10;43!CL:0002320;1.07e-09;188!CL:0002620;4.05e-09;23!CL:0002334;5.82e-09;12!CL:0000359;2.02e-08;32!CL:0000499;3.96e-08;28!CL:0000393;9.90e-08;61!CL:0000211;9.90e-08;61!CL:0000327;3.18e-07;15!CL:0002494;3.30e-07;16!CL:0000034;3.55e-07;69!CL:0002570;5.39e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.43e-27,76;CL:0000680,2.87e-18,58;CL:0000056,2.87e-18,58;CL:0000355,2.87e-18,58;CL:0000187,1.17e-17,55;CL:0000048,7.50e-17,427;CL:0000723,8.53e-16,433;CL:0000034,1.87e-14,441;CL:0000393,3.21e-14,61;CL:0000211,3.21e-14,61;CL:0000192,1.86e-13,43;CL:0000514,1.86e-13,43;CL:0002620,3.99e-09,23;CL:0002334,5.55e-09,12;CL:0000359,1.03e-08,32;CL:0000222,1.75e-08,121;CL:0002320,2.27e-08,361;CL:0000499,3.89e-08,28;CL:0000327,3.25e-07,15;CL:0002494,3.50e-07,16;CL:0002570,5.48e-07,8;CL:0000134,7.43e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000355;6.78e-10;58!CL:0000514;9.33e-10;43 | |ontology_enrichment_development_v019=CL:0000355;6.78e-10;58!CL:0000514;9.33e-10;43 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:2394;3.79e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;3.79e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,3.67e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!8.44e-20!83;UBERON:0002329!8.44e-20!83;UBERON:0003077!8.44e-20!83;UBERON:0003059!8.44e-20!83;UBERON:0007282!8.44e-20!83;UBERON:0009618!8.44e-20!83;UBERON:0007285!8.44e-20!83;UBERON:0004290!8.19e-18!70;UBERON:0001134!1.02e-16!61;UBERON:0002036!1.02e-16!61;UBERON:0003082!1.02e-16!61;UBERON:0002385!1.09e-16!63;UBERON:0001015!1.09e-16!63;UBERON:0000383!1.09e-16!63;UBERON:0005256!3.17e-14!143;UBERON:0000486!2.85e-13!82;UBERON:0002100!5.09e-09!216;UBERON:0000475!8.37e-09!365;UBERON:0002199!2.77e-08!45;UBERON:0002416!2.77e-08!45;UBERON:0003102!3.24e-08!95;UBERON:0004872!5.92e-08!84;UBERON:0001013!1.68e-07!14;UBERON:0003104!2.11e-07!238;UBERON:0009142!2.11e-07!238;UBERON:0000481!5.14e-07!347;UBERON:0002097!9.02e-07!40 | |ontology_enrichment_uberon=UBERON:0000914!8.44e-20!83;UBERON:0002329!8.44e-20!83;UBERON:0003077!8.44e-20!83;UBERON:0003059!8.44e-20!83;UBERON:0007282!8.44e-20!83;UBERON:0009618!8.44e-20!83;UBERON:0007285!8.44e-20!83;UBERON:0004290!8.19e-18!70;UBERON:0001134!1.02e-16!61;UBERON:0002036!1.02e-16!61;UBERON:0003082!1.02e-16!61;UBERON:0002385!1.09e-16!63;UBERON:0001015!1.09e-16!63;UBERON:0000383!1.09e-16!63;UBERON:0005256!3.17e-14!143;UBERON:0000486!2.85e-13!82;UBERON:0002100!5.09e-09!216;UBERON:0000475!8.37e-09!365;UBERON:0002199!2.77e-08!45;UBERON:0002416!2.77e-08!45;UBERON:0003102!3.24e-08!95;UBERON:0004872!5.92e-08!84;UBERON:0001013!1.68e-07!14;UBERON:0003104!2.11e-07!238;UBERON:0009142!2.11e-07!238;UBERON:0000481!5.14e-07!347;UBERON:0002097!9.02e-07!40 | ||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.47e-09;198!UBERON:0001013;7.81e-08;14!UBERON:0002385;9.29e-08;31!UBERON:0001015;9.29e-08;31!UBERON:0000383;9.29e-08;31!UBERON:0002204;1.58e-07;70!UBERON:0002199;9.90e-07;46!UBERON:0002416;9.90e-07;46 | |ontology_enrichment_uberon_v019=UBERON:0002384;1.47e-09;198!UBERON:0001013;7.81e-08;14!UBERON:0002385;9.29e-08;31!UBERON:0001015;9.29e-08;31!UBERON:0000383;9.29e-08;31!UBERON:0002204;1.58e-07;70!UBERON:0002199;9.90e-07;46!UBERON:0002416;9.90e-07;46 | ||
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| ||
|short_description=p12@COL1A1 | |short_description=p12@COL1A1 | ||
}} | }} |
Latest revision as of 00:02, 16 September 2015
Short description: | p12@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_ENST00000510710_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.43e-27 | 76 |
muscle precursor cell | 2.87e-18 | 58 |
myoblast | 2.87e-18 | 58 |
multi-potent skeletal muscle stem cell | 2.87e-18 | 58 |
muscle cell | 1.17e-17 | 55 |
multi fate stem cell | 7.50e-17 | 427 |
somatic stem cell | 8.53e-16 | 433 |
stem cell | 1.87e-14 | 441 |
electrically responsive cell | 3.21e-14 | 61 |
electrically active cell | 3.21e-14 | 61 |
smooth muscle cell | 1.86e-13 | 43 |
smooth muscle myoblast | 1.86e-13 | 43 |
skin fibroblast | 3.99e-09 | 23 |
preadipocyte | 5.55e-09 | 12 |
vascular associated smooth muscle cell | 1.03e-08 | 32 |
mesodermal cell | 1.75e-08 | 121 |
connective tissue cell | 2.27e-08 | 361 |
stromal cell | 3.89e-08 | 28 |
extracellular matrix secreting cell | 3.25e-07 | 15 |
cardiocyte | 3.50e-07 | 16 |
mesenchymal stem cell of adipose | 5.48e-07 | 8 |
mesenchymal cell | 7.43e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.08e-18 | 73 |
somite | 1.38e-18 | 71 |
presomitic mesoderm | 1.38e-18 | 71 |
presumptive segmental plate | 1.38e-18 | 71 |
dermomyotome | 1.38e-18 | 71 |
trunk paraxial mesoderm | 1.38e-18 | 71 |
skeletal muscle tissue | 2.06e-18 | 62 |
striated muscle tissue | 2.06e-18 | 62 |
myotome | 2.06e-18 | 62 |
epithelial vesicle | 4.25e-18 | 78 |
paraxial mesoderm | 4.91e-18 | 72 |
presumptive paraxial mesoderm | 4.91e-18 | 72 |
muscle tissue | 6.43e-18 | 64 |
musculature | 6.43e-18 | 64 |
musculature of body | 6.43e-18 | 64 |
multilaminar epithelium | 8.76e-15 | 83 |
mesenchyme | 3.31e-13 | 160 |
entire embryonic mesenchyme | 3.31e-13 | 160 |
trunk mesenchyme | 5.73e-13 | 122 |
integument | 1.55e-09 | 46 |
integumental system | 1.55e-09 | 46 |
connective tissue | 1.26e-08 | 371 |
mesoderm | 3.39e-08 | 315 |
mesoderm-derived structure | 3.39e-08 | 315 |
presumptive mesoderm | 3.39e-08 | 315 |
adipose tissue | 7.75e-08 | 14 |
splanchnic layer of lateral plate mesoderm | 8.24e-08 | 83 |
skin of body | 9.25e-08 | 41 |
unilaminar epithelium | 2.51e-07 | 148 |
surface structure | 3.80e-07 | 99 |
trunk | 6.37e-07 | 199 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.67e-07 | 14 |