FFCP PHASE1:Hg19::chr21:47406543..47406568,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr21:47406543..47406568,+
|short_description=p5@COL6A1
|description=CAGE_peak_5_at_COL6A1_5end
|association_with_transcript=-454bp_to_ENST00000492851_5end
|En...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1291 | |EntrezGene=1291 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2211 | |HGNC=2211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-454bp_to_ENST00000492851_5end | |||
|cluster_id=chr21:47406543..47406568,+ | |||
|coexpression_cluster_id=C198 | |||
|description=CAGE_peak_5_at_COL6A1_5end | |||
|id=chr21:47406543..47406568,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.52e-42!180;CL:0000057!3.38e-24!75;CL:0000183!1.68e-18!59;CL:0000680!6.94e-18!57;CL:0000056!6.94e-18!57;CL:0000355!6.94e-18!57;CL:0000187!1.90e-17!54;CL:0000393!3.41e-16!60;CL:0000211!3.41e-16!60;CL:0000192!9.12e-14!42;CL:0000514!9.12e-14!42;CL:0000359!4.44e-10!32;CL:0002620!8.48e-10!23;CL:0000048!4.89e-08!430;CL:0000499!8.93e-08!27;CL:0000723!2.36e-07!436;CL:0000034!2.49e-07!444 | |||
|ontology_enrichment_celltype_v019=CL:0000057;8.96e-13;73!CL:0002620;9.43e-13;23!CL:0000723;2.21e-11;61!CL:0000192;4.47e-11;43!CL:0000134;9.44e-11;55!CL:0000187;1.74e-10;55!CL:0002320;3.39e-10;188!CL:0000048;7.16e-10;58!CL:0000359;2.06e-09;32!CL:0000393;4.97e-09;61!CL:0000211;4.97e-09;61!CL:0002570;6.27e-08;8!CL:0002334;7.46e-08;12!CL:0000034;3.37e-07;69!CL:0000188;3.70e-07;9!CL:0002494;6.78e-07;16 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.34e-32,76;CL:0000048,9.60e-22,427;CL:0000723,1.01e-20,433;CL:0000680,1.19e-19,58;CL:0000056,1.19e-19,58;CL:0000355,1.19e-19,58;CL:0000187,2.04e-19,55;CL:0000034,2.09e-19,441;CL:0000393,8.00e-17,61;CL:0000211,8.00e-17,61;CL:0000192,9.39e-15,43;CL:0000514,9.39e-15,43;CL:0002620,1.26e-12,23;CL:0002320,3.35e-11,361;CL:0000359,1.45e-09,32;CL:0000134,6.82e-09,354;CL:0002570,5.09e-08,8;CL:0002334,7.34e-08,12;CL:0000188,2.67e-07,9;CL:0000219,5.39e-07,386 | |||
|ontology_enrichment_development_v019=CL:0000514;4.47e-11;43!CL:0000355;3.96e-10;58 | |||
|ontology_enrichment_disease=DOID:2394!6.61e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.91e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.56e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.02e-22!83;UBERON:0002329!1.02e-22!83;UBERON:0003077!1.02e-22!83;UBERON:0003059!1.02e-22!83;UBERON:0007282!1.02e-22!83;UBERON:0009618!1.02e-22!83;UBERON:0007285!1.02e-22!83;UBERON:0004290!5.10e-21!70;UBERON:0000486!9.22e-18!82;UBERON:0002385!2.51e-17!63;UBERON:0001015!2.51e-17!63;UBERON:0000383!2.51e-17!63;UBERON:0001134!7.64e-17!61;UBERON:0002036!7.64e-17!61;UBERON:0003082!7.64e-17!61;UBERON:0005256!4.12e-16!143;UBERON:0000475!1.09e-12!365;UBERON:0003102!1.61e-12!95;UBERON:0002100!2.94e-11!216;UBERON:0000481!3.62e-11!347;UBERON:0002199!1.92e-09!45;UBERON:0002416!1.92e-09!45;UBERON:0003104!7.03e-09!238;UBERON:0009142!7.03e-09!238;UBERON:0000468!2.18e-08!659;UBERON:0002097!4.51e-08!40;UBERON:0004872!8.01e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.87e-10;198!UBERON:0002385;2.43e-09;31!UBERON:0001015;2.43e-09;31!UBERON:0000383;2.43e-09;31!UBERON:0002199;4.13e-09;46!UBERON:0002416;4.13e-09;46!UBERON:0002097;1.83e-08;41!UBERON:0003102;3.45e-08;50!UBERON:0004573;5.02e-08;33!UBERON:0004571;5.02e-08;33!UBERON:0001013;5.68e-08;14!UBERON:0002204;2.20e-07;70!UBERON:0002067;2.77e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,5.99e-24,73;UBERON:0002329,6.25e-24,71;UBERON:0003059,6.25e-24,71;UBERON:0007282,6.25e-24,71;UBERON:0004290,6.25e-24,71;UBERON:0009618,6.25e-24,71;UBERON:0003077,2.51e-23,72;UBERON:0007285,2.51e-23,72;UBERON:0007503,4.67e-20,78;UBERON:0000486,7.69e-20,83;UBERON:0002385,1.82e-18,64;UBERON:0001015,1.82e-18,64;UBERON:0000383,1.82e-18,64;UBERON:0001134,2.24e-18,62;UBERON:0002036,2.24e-18,62;UBERON:0003082,2.24e-18,62;UBERON:0005256,4.11e-17,122;UBERON:0003104,2.45e-16,160;UBERON:0009142,2.45e-16,160;UBERON:0002199,5.07e-13,46;UBERON:0002416,5.07e-13,46;UBERON:0003102,3.65e-12,99;UBERON:0002384,3.75e-11,371;UBERON:0002097,7.47e-11,41;UBERON:0000926,3.92e-09,315;UBERON:0004120,3.92e-09,315;UBERON:0006603,3.92e-09,315;UBERON:0000490,9.73e-09,148;UBERON:0004573,9.79e-09,33;UBERON:0004571,9.79e-09,33;UBERON:0001637,2.21e-08,42;UBERON:0003509,2.21e-08,42;UBERON:0004572,2.21e-08,42;UBERON:0002100,3.68e-08,199;UBERON:0001013,4.09e-08,14;UBERON:0002067,1.86e-07,9;UBERON:0004016,1.86e-07,9;UBERON:0010083,1.86e-07,9;UBERON:0004872,7.59e-07,83 | |||
|phase1_expression=2.18014055124668,11.9896293378951,3.24195129420734,4.00293193412522,8.49226079411847,0.872338524100369,0,2.52687949370732,6.26845507679612,0,0,0,0,2.22779435328084,4.30816588446291,8.0679017574213,3.61616716814386,6.57279081348636,5.36726078669558,0.61560529038394,3.06001036866379,3.76145665773705,0,1.09499540058307,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.511450247374121,1.80719576192283,9.5254203020819,6.51809335323707,1.5905718941022,4.86634870302636,0.378139268656271,0.443458794925128,0.351339142772504,0,0,0,0,0,0.132957960518865,0,0,0,0,0.860234595106124,0,0,0,0,0,0,0.71153252537342,0,0,0,0.732186172644509,0,0,0,0.22452937262617,0.112611480483322,0,0,0,0,0,0,2.98183171017191,1.77282716330412,1.19168262731897,9.75244510545967,1.41867352879343,2.24271040056923,1.06748995729705,1.2333377420858,1.55605517699883,2.2900814251847,2.61539044981534,2.8757911252537,10.37116664064,0.234321431833797,4.37024107562449,1.71141546463335,6.57574194427925,2.70099346880659,3.56120477609889,2.80901613404497,1.42907919878425,4.91337269247072,4.95963749643674,4.75201142912821,10.3852110296994,1.82032272387605,10.7792721272436,1.5150250255866,2.87772595705518,0.277064115484183,2.19488810440419,7.66219489497549,5.40857012063748,0.453728732640084,3.40840307808838,4.05759038755278,4.23863802319124,7.50227740211006,3.7098910525838,1.28820270022815,3.16398655763703,4.21940830603166,2.53336213419116,2.27190396819703,4.78659472939957,11.4768700341356,7.4552014428489,2.11579406278045,1.18692414617341,0,0.272746120590835,0,0.609868530647977,0.530119073285941,0.464775771478074,0.310983165046111,0.504641701751257,0,10.9514672630871,36.0214925388016,1.38134921352481,5.10804720835177,11.5500717067134,0,0,0,0,0,0,0,0,0,0,4.20725321410337,3.7041661019826,10.2906097969879,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,1.3032332212413,5.19967392639789,0,0,0.117408694235822,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0,0,0,0.414656231081544,0,0,0.063497894292169,0,0,0,0.514137463516618,0.300343057843917,0,0.897048674762886,0.43596006883328,0.5867062865676,0.775630294546667,3.57656445851882,6.762422020448,0.797814349754612,1.04007436911366,0.257207374262142,0,1.8649552531127,4.28933980974443,2.71310802695722,1.64648067356154,1.62868092146868,2.48774364119782,2.37585561880029,0,0.871533458600294,0.599837947092342,0,0,0,2.63587341040741,3.44585807502342,2.85273810081437,1.88215698667853,2.05476322550383,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,3.43536176813592,9.50323990013386,5.15403545029498,2.70362119990049,1.60586089917446,0.946214490203608,1.05427273493442,1.80567659836631,18.1926003244788,1.03473071292505,1.32845119707087,3.13427586520895,3.99664626553181,4.50342662164303,10.9805895619474,0,0,0,0,0,0,1.73675465473144,1.07423381301644,7.85848264412606,2.43464383585832,0.511707249066704,2.2519548960105,2.96836132889982,11.5657270351992,10.8312652441008,2.62806899244189,14.5391240171414,10.5751444398563,0.241718899183244,0.200506470303285,0,2.75554675595056,10.925470080403,10.2277043668351,0,0.0770153371044148,0,0,0,0,0.170093705276516,0,0,0.541892875087706,0.501689773854853,0,0,0,0,0,0,0,0,0.103041011647722,0.366277859273374,0.165018999841176,0,0.650060246036521,1.6068392984416,3.48014585851639,3.69716681075147,4.75861391651002,3.03240459465967,2.57808587683857,6.23571783831183,2.72725207731523,3.91740956845644,0,0,0,0,0,7.55549632393536,1.3940745403212,1.54016790088044,0,0.869932992075073,3.33583594387056,1.28812398067792,0.744316738719335,0.632758849437452,2.85945290885737,1.27948895655667,1.28381696410176,1.90921948755562,3.92474320099615,1.61885211824983,6.58888871366531,3.53437207037059,1.41527737101321,6.34041284692033,1.26377536871694,1.46290121726877,4.38684281336312,10.5650146756755,1.9109987597118,7.7772987574542,6.78048699721457,1.10273068709225,2.65375590096488,7.45366504931397,1.73632660280006,3.27947376023316,0.811641507850816,3.40805847909725,2.25356482025793,0.430234056612155,0.785992328104969,1.07001315444375,2.83808851256478,4.64436797654861,3.62224382255892,1.13841952129715,5.94889024416471,0,1.34060455107157,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159426272728822,0,0.383010740264733,0,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,1.46508179271894,0,0.222886768554957,0,1.19372242368845,0.296964680832639,0,0,0.281338832821026,0.333926115068718,0,0.422250816255987,1.79323189425963,1.93398740871803,0,0,0,6.84287092855976,0.179736702294654,0,0,1.1837208676432,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0.520874984799877,0,0.241192877250816,0,1.21637185924347,0,0,0,0,1.30815439456455,0.227884111694002,0,0,0.108647371922008,0,1.4655614944298,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.265372693510018,3.6661808696017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| ||
|short_description=p5@COL6A1 | |||
}} | }} |
Latest revision as of 22:00, 18 September 2015
Short description: | p5@COL6A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_COL6A1_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -454bp_to_ENST00000492851_5end |
EntrezGene: | COL6A1 |
HGNC: | 2211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.34e-32 | 76 |
multi fate stem cell | 9.60e-22 | 427 |
somatic stem cell | 1.01e-20 | 433 |
muscle precursor cell | 1.19e-19 | 58 |
myoblast | 1.19e-19 | 58 |
multi-potent skeletal muscle stem cell | 1.19e-19 | 58 |
muscle cell | 2.04e-19 | 55 |
stem cell | 2.09e-19 | 441 |
electrically responsive cell | 8.00e-17 | 61 |
electrically active cell | 8.00e-17 | 61 |
smooth muscle cell | 9.39e-15 | 43 |
smooth muscle myoblast | 9.39e-15 | 43 |
skin fibroblast | 1.26e-12 | 23 |
connective tissue cell | 3.35e-11 | 361 |
vascular associated smooth muscle cell | 1.45e-09 | 32 |
mesenchymal cell | 6.82e-09 | 354 |
mesenchymal stem cell of adipose | 5.09e-08 | 8 |
preadipocyte | 7.34e-08 | 12 |
cell of skeletal muscle | 2.67e-07 | 9 |
motile cell | 5.39e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.56e-07 | 14 |