FFCP PHASE1:Hg19::chr4:48136217..48136273,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7294 | |EntrezGene=7294 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12434 | |HGNC=12434 | ||
|TSSclassifier=strong | |||
|UniProt=P42681 | |UniProt=P42681 | ||
|association_with_transcript=0bp_to_ENST00000264316,ENST00000510457,NM_003328,uc003gxx.3,uc003gxy.1_5end | |association_with_transcript=0bp_to_ENST00000264316,ENST00000510457,NM_003328,uc003gxx.3,uc003gxy.1_5end | ||
|cluster_id=chr4:48136217..48136273,- | |||
|coexpression_cluster_id=C18 | |coexpression_cluster_id=C18 | ||
|description=CAGE_peak_1_at_TXK_5end | |description=CAGE_peak_1_at_TXK_5end | ||
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|ontology_enrichment_celltype=CL:0000738!1.07e-27!140;CL:0000791!1.29e-22!18;CL:0000789!1.29e-22!18;CL:0002420!1.29e-22!18;CL:0002419!1.29e-22!18;CL:0000790!1.29e-22!18;CL:0000084!3.60e-21!25;CL:0000827!3.60e-21!25;CL:0002087!1.99e-20!119;CL:0000037!9.64e-19!172;CL:0000566!9.64e-19!172;CL:0002031!4.79e-18!124;CL:0000988!1.94e-16!182;CL:0002032!1.69e-15!165;CL:0000837!1.69e-15!165;CL:0000625!1.70e-14!11;CL:0000838!1.61e-12!52;CL:0000542!4.22e-12!53;CL:0000051!4.22e-12!53;CL:0000766!1.76e-11!76;CL:0000624!1.01e-08!6;CL:0000839!1.71e-07!70;CL:0002194!2.68e-07!63;CL:0000576!2.68e-07!63;CL:0000040!2.68e-07!63;CL:0000559!2.68e-07!63;CL:0000557!2.84e-07!71;CL:0002009!7.64e-07!65 | |ontology_enrichment_celltype=CL:0000738!1.07e-27!140;CL:0000791!1.29e-22!18;CL:0000789!1.29e-22!18;CL:0002420!1.29e-22!18;CL:0002419!1.29e-22!18;CL:0000790!1.29e-22!18;CL:0000084!3.60e-21!25;CL:0000827!3.60e-21!25;CL:0002087!1.99e-20!119;CL:0000037!9.64e-19!172;CL:0000566!9.64e-19!172;CL:0002031!4.79e-18!124;CL:0000988!1.94e-16!182;CL:0002032!1.69e-15!165;CL:0000837!1.69e-15!165;CL:0000625!1.70e-14!11;CL:0000838!1.61e-12!52;CL:0000542!4.22e-12!53;CL:0000051!4.22e-12!53;CL:0000766!1.76e-11!76;CL:0000624!1.01e-08!6;CL:0000839!1.71e-07!70;CL:0002194!2.68e-07!63;CL:0000576!2.68e-07!63;CL:0000040!2.68e-07!63;CL:0000559!2.68e-07!63;CL:0000557!2.84e-07!71;CL:0002009!7.64e-07!65 | ||
|ontology_enrichment_celltype_v019=CL:0000791;3.47e-34;18!CL:0000789;3.47e-34;18!CL:0002419;3.47e-34;18!CL:0000084;1.49e-30;25!CL:0000625;1.41e-21;11!CL:0000624;1.21e-12;6!CL:0000542;3.03e-09;53!CL:0000094;1.83e-07;8!CL:0000898;3.37e-07;3!CL:0000226;5.27e-07;3!CL:0000842;5.27e-07;3!CL:0000623;5.99e-07;3 | |ontology_enrichment_celltype_v019=CL:0000791;3.47e-34;18!CL:0000789;3.47e-34;18!CL:0002419;3.47e-34;18!CL:0000084;1.49e-30;25!CL:0000625;1.41e-21;11!CL:0000624;1.21e-12;6!CL:0000542;3.03e-09;53!CL:0000094;1.83e-07;8!CL:0000898;3.37e-07;3!CL:0000226;5.27e-07;3!CL:0000842;5.27e-07;3!CL:0000623;5.99e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.53e-34,18;CL:0000789,3.53e-34,18;CL:0002420,3.53e-34,18;CL:0002419,3.53e-34,18;CL:0000790,3.53e-34,18;CL:0000084,1.34e-30,25;CL:0000827,1.34e-30,25;CL:0000625,1.42e-21,11;CL:0000738,6.35e-20,136;CL:0000838,3.72e-17,52;CL:0000542,1.09e-16,53;CL:0000051,1.09e-16,53;CL:0002087,6.98e-15,115;CL:0000037,1.50e-13,168;CL:0000624,1.22e-12,6;CL:0000988,3.35e-12,177;CL:0002031,6.14e-11,120;CL:0002032,5.38e-10,161;CL:0000837,5.38e-10,161;CL:0000094,1.84e-07,8;CL:0000898,3.38e-07,3;CL:0000226,5.33e-07,3;CL:0000842,5.33e-07,3;CL:0000623,5.99e-07,3;CL:0000825,5.99e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.47e-34;18!CL:0000051;3.03e-09;53 | |ontology_enrichment_development_v019=CL:0000790;3.47e-34;18!CL:0000051;3.03e-09;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.43e-18!115;UBERON:0002390!9.08e-15!102;UBERON:0003061!9.08e-15!102;UBERON:0002193!7.86e-14!112;UBERON:0000178!4.63e-11!15;UBERON:0000179!4.63e-11!15;UBERON:0000463!4.63e-11!15 | |ontology_enrichment_uberon=UBERON:0007023!7.43e-18!115;UBERON:0002390!9.08e-15!102;UBERON:0003061!9.08e-15!102;UBERON:0002193!7.86e-14!112;UBERON:0000178!4.63e-11!15;UBERON:0000179!4.63e-11!15;UBERON:0000463!4.63e-11!15 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.01e-17;15!UBERON:0000179;5.01e-17;15!UBERON:0000463;5.01e-17;15!UBERON:0002390;7.12e-11;32!UBERON:0002193;1.50e-07;42 | |ontology_enrichment_uberon_v019=UBERON:0000178;5.01e-17;15!UBERON:0000179;5.01e-17;15!UBERON:0000463;5.01e-17;15!UBERON:0002390;7.12e-11;32!UBERON:0002193;1.50e-07;42 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,4.98e-17,15;UBERON:0000179,4.98e-17,15;UBERON:0000463,4.98e-17,15;UBERON:0004177,1.53e-09,7;UBERON:0005057,1.53e-09,7;UBERON:0002193,1.38e-08,108;UBERON:0002390,1.56e-08,98;UBERON:0003061,1.56e-08,98;UBERON:0002370,3.33e-08,4;UBERON:0005058,3.33e-08,4;UBERON:0009113,3.33e-08,4;UBERON:0003295,3.33e-08,4;UBERON:0005562,3.33e-08,4 | |||
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| ||
|short_description=p1@TXK | |short_description=p1@TXK | ||
}} | }} |
Latest revision as of 22:28, 17 September 2015
Short description: | p1@TXK |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TXK_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | 0bp_to_ENST00000264316, ENST00000510457, NM_003328, uc003gxx.3, uc003gxy.1_5end |
EntrezGene: | TXK |
HGNC: | 12434 |
UniProt: | P42681 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.53e-34 | 18 |
alpha-beta T cell | 3.53e-34 | 18 |
immature T cell | 3.53e-34 | 18 |
mature T cell | 3.53e-34 | 18 |
immature alpha-beta T cell | 3.53e-34 | 18 |
T cell | 1.34e-30 | 25 |
pro-T cell | 1.34e-30 | 25 |
CD8-positive, alpha-beta T cell | 1.42e-21 | 11 |
leukocyte | 6.35e-20 | 136 |
lymphoid lineage restricted progenitor cell | 3.72e-17 | 52 |
lymphocyte | 1.09e-16 | 53 |
common lymphoid progenitor | 1.09e-16 | 53 |
nongranular leukocyte | 6.98e-15 | 115 |
hematopoietic stem cell | 1.50e-13 | 168 |
CD4-positive, alpha-beta T cell | 1.22e-12 | 6 |
hematopoietic cell | 3.35e-12 | 177 |
hematopoietic lineage restricted progenitor cell | 6.14e-11 | 120 |
hematopoietic oligopotent progenitor cell | 5.38e-10 | 161 |
hematopoietic multipotent progenitor cell | 5.38e-10 | 161 |
granulocyte | 1.84e-07 | 8 |
naive T cell | 3.38e-07 | 3 |
single nucleate cell | 5.33e-07 | 3 |
mononuclear cell | 5.33e-07 | 3 |
natural killer cell | 5.99e-07 | 3 |
pro-NK cell | 5.99e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood | 4.98e-17 | 15 |
haemolymphatic fluid | 4.98e-17 | 15 |
organism substance | 4.98e-17 | 15 |
hemopoietic organ | 1.53e-09 | 7 |
immune organ | 1.53e-09 | 7 |
hemolymphoid system | 1.38e-08 | 108 |
hematopoietic system | 1.56e-08 | 98 |
blood island | 1.56e-08 | 98 |
thymus | 3.33e-08 | 4 |
hemolymphoid system gland | 3.33e-08 | 4 |
thymic region | 3.33e-08 | 4 |
pharyngeal gland | 3.33e-08 | 4 |
thymus primordium | 3.33e-08 | 4 |