FFCP PHASE1:Hg19::chr6:31545559..31545570,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7124 | |EntrezGene=7124 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11892 | |HGNC=11892 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-235bp_to_AJ227911_5end | |association_with_transcript=-235bp_to_AJ227911_5end | ||
|cluster_id=chr6:31545559..31545570,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_9_at_TNF_5end | |description=CAGE_peak_9_at_TNF_5end | ||
Line 9: | Line 14: | ||
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|ontology_enrichment_celltype_v019=CL:0000860;3.04e-81;33!CL:0002057;3.04e-81;33!CL:0000473;1.29e-55;39!CL:0000234;1.29e-55;39!CL:0000576;2.93e-33;48!CL:0000766;1.84e-21;69!CL:0002087;1.05e-16;104!CL:0000763;4.66e-15;100 | |ontology_enrichment_celltype_v019=CL:0000860;3.04e-81;33!CL:0002057;3.04e-81;33!CL:0000473;1.29e-55;39!CL:0000234;1.29e-55;39!CL:0000576;2.93e-33;48!CL:0000766;1.84e-21;69!CL:0002087;1.05e-16;104!CL:0000763;4.66e-15;100 | ||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.30e-69,42;CL:0002057,4.30e-69,42;CL:0000473,2.62e-60,48;CL:0000234,2.62e-60,48;CL:0002194,5.30e-48,59;CL:0000576,5.30e-48,59;CL:0000040,5.30e-48,59;CL:0000559,5.30e-48,59;CL:0002009,2.06e-46,61;CL:0000839,7.44e-43,66;CL:0000557,3.32e-42,67;CL:0000766,3.16e-39,72;CL:0000763,7.99e-26,108;CL:0000049,7.99e-26,108;CL:0002087,3.52e-24,115;CL:0002031,4.02e-23,120;CL:0000738,2.98e-20,136;CL:0002032,6.76e-17,161;CL:0000837,6.76e-17,161;CL:0000037,3.92e-16,168;CL:0000988,3.07e-15,177;CL:0000134,8.46e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;1.33e-48;42!CL:0000049;4.05e-07;108 | |ontology_enrichment_development_v019=CL:0002057;1.33e-48;42!CL:0000049;4.05e-07;108 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.03e-37,76;UBERON:0001474,2.42e-34,82;UBERON:0004765,3.32e-31,90;UBERON:0002405,3.64e-30,93;UBERON:0002390,1.42e-28,98;UBERON:0003061,1.42e-28,98;UBERON:0001434,5.58e-28,100;UBERON:0002193,7.99e-26,108;UBERON:0002204,3.08e-16,167;UBERON:0003081,4.26e-13,203;UBERON:0000926,7.36e-08,315;UBERON:0004120,7.36e-08,315;UBERON:0006603,7.36e-08,315 | |||
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|short_description=p9@TNF | |short_description=p9@TNF | ||
}} | }} |
Latest revision as of 21:47, 17 September 2015
Short description: | p9@TNF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_TNF_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -235bp_to_AJ227911_5end |
EntrezGene: | TNF |
HGNC: | 11892 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.30e-69 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.30e-69 | 42 |
defensive cell | 2.62e-60 | 48 |
phagocyte | 2.62e-60 | 48 |
monopoietic cell | 5.30e-48 | 59 |
monocyte | 5.30e-48 | 59 |
monoblast | 5.30e-48 | 59 |
promonocyte | 5.30e-48 | 59 |
macrophage dendritic cell progenitor | 2.06e-46 | 61 |
myeloid lineage restricted progenitor cell | 7.44e-43 | 66 |
granulocyte monocyte progenitor cell | 3.32e-42 | 67 |
myeloid leukocyte | 3.16e-39 | 72 |
myeloid cell | 7.99e-26 | 108 |
common myeloid progenitor | 7.99e-26 | 108 |
nongranular leukocyte | 3.52e-24 | 115 |
hematopoietic lineage restricted progenitor cell | 4.02e-23 | 120 |
leukocyte | 2.98e-20 | 136 |
hematopoietic oligopotent progenitor cell | 6.76e-17 | 161 |
hematopoietic multipotent progenitor cell | 6.76e-17 | 161 |
hematopoietic stem cell | 3.92e-16 | 168 |
hematopoietic cell | 3.07e-15 | 177 |
mesenchymal cell | 8.46e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.03e-37 | 76 |
bone element | 2.42e-34 | 82 |
skeletal element | 3.32e-31 | 90 |
immune system | 3.64e-30 | 93 |
hematopoietic system | 1.42e-28 | 98 |
blood island | 1.42e-28 | 98 |
skeletal system | 5.58e-28 | 100 |
hemolymphoid system | 7.99e-26 | 108 |
musculoskeletal system | 3.08e-16 | 167 |
lateral plate mesoderm | 4.26e-13 | 203 |
mesoderm | 7.36e-08 | 315 |
mesoderm-derived structure | 7.36e-08 | 315 |
presumptive mesoderm | 7.36e-08 | 315 |