FFCP PHASE1:Hg19::chr2:166529664..166529668,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:166529664..166529668,+ | |||
|coexpression_cluster_id=C377 | |coexpression_cluster_id=C377 | ||
|description=CAGE_peak_at_chr2:166529664..166529668,+ | |description=CAGE_peak_at_chr2:166529664..166529668,+ | ||
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|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:171!1.06e-11!10;DOID:169!1.82e-08!6 | |ontology_enrichment_disease=DOID:171!1.06e-11!10;DOID:169!1.82e-08!6 | ||
|ontology_enrichment_disease_v019=DOID:154;9.86e-18;2!DOID:4236;9.86e-18;2!DOID:3119;1.57e-10;14 | |ontology_enrichment_disease_v019=DOID:154;9.86e-18;2!DOID:4236;9.86e-18;2!DOID:3119;1.57e-10;14 | ||
|ontology_enrichment_disease_v019_2=DOID:154,9.07e-18,2;DOID:4236,9.07e-18,2;DOID:3119,1.57e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0001049!5.65e-32!57;UBERON:0005068!5.65e-32!57;UBERON:0006241!5.65e-32!57;UBERON:0007135!5.65e-32!57;UBERON:0002780!8.95e-30!41;UBERON:0001890!8.95e-30!41;UBERON:0006240!8.95e-30!41;UBERON:0003080!7.18e-29!42;UBERON:0002346!8.24e-29!90;UBERON:0002616!1.29e-28!59;UBERON:0000073!5.98e-28!94;UBERON:0001016!5.98e-28!94;UBERON:0002020!8.78e-27!34;UBERON:0003528!8.78e-27!34;UBERON:0001893!2.34e-26!34;UBERON:0003075!8.18e-26!86;UBERON:0007284!8.18e-26!86;UBERON:0001869!1.19e-25!32;UBERON:0002791!3.06e-25!33;UBERON:0003056!5.04e-25!61;UBERON:0001017!3.63e-24!82;UBERON:0000955!5.15e-24!69;UBERON:0006238!5.15e-24!69;UBERON:0005743!5.95e-24!86;UBERON:0002619!6.13e-24!22;UBERON:0000956!7.97e-23!25;UBERON:0000203!7.97e-23!25;UBERON:0000924!1.69e-21!173;UBERON:0006601!1.69e-21!173;UBERON:0001950!1.57e-20!20;UBERON:0004121!3.17e-19!169;UBERON:0000033!2.69e-17!123;UBERON:0000153!5.97e-17!129;UBERON:0007811!5.97e-17!129;UBERON:0007023!4.61e-15!115;UBERON:0000200!6.05e-11!6;UBERON:0001872!6.74e-10!5;UBERON:0000488!4.51e-07!4;UBERON:0000349!5.06e-07!5;UBERON:0000013!5.81e-07!5;UBERON:0002410!5.81e-07!5 | |ontology_enrichment_uberon=UBERON:0001049!5.65e-32!57;UBERON:0005068!5.65e-32!57;UBERON:0006241!5.65e-32!57;UBERON:0007135!5.65e-32!57;UBERON:0002780!8.95e-30!41;UBERON:0001890!8.95e-30!41;UBERON:0006240!8.95e-30!41;UBERON:0003080!7.18e-29!42;UBERON:0002346!8.24e-29!90;UBERON:0002616!1.29e-28!59;UBERON:0000073!5.98e-28!94;UBERON:0001016!5.98e-28!94;UBERON:0002020!8.78e-27!34;UBERON:0003528!8.78e-27!34;UBERON:0001893!2.34e-26!34;UBERON:0003075!8.18e-26!86;UBERON:0007284!8.18e-26!86;UBERON:0001869!1.19e-25!32;UBERON:0002791!3.06e-25!33;UBERON:0003056!5.04e-25!61;UBERON:0001017!3.63e-24!82;UBERON:0000955!5.15e-24!69;UBERON:0006238!5.15e-24!69;UBERON:0005743!5.95e-24!86;UBERON:0002619!6.13e-24!22;UBERON:0000956!7.97e-23!25;UBERON:0000203!7.97e-23!25;UBERON:0000924!1.69e-21!173;UBERON:0006601!1.69e-21!173;UBERON:0001950!1.57e-20!20;UBERON:0004121!3.17e-19!169;UBERON:0000033!2.69e-17!123;UBERON:0000153!5.97e-17!129;UBERON:0007811!5.97e-17!129;UBERON:0007023!4.61e-15!115;UBERON:0000200!6.05e-11!6;UBERON:0001872!6.74e-10!5;UBERON:0000488!4.51e-07!4;UBERON:0000349!5.06e-07!5;UBERON:0000013!5.81e-07!5;UBERON:0002410!5.81e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0001874;5.97e-34;1!UBERON:0002038;5.97e-34;1!UBERON:0009661;5.97e-34;1!UBERON:0002950;5.97e-34;1!UBERON:0001891;5.97e-34;1!UBERON:0009663;9.48e-20;7!UBERON:0002420;1.31e-15;9!UBERON:0000125;1.31e-15;9!UBERON:0007245;1.31e-15;9!UBERON:0002308;1.31e-15;9!UBERON:0010009;1.31e-15;9!UBERON:0010011;1.31e-15;9!UBERON:0000454;1.31e-15;9!UBERON:0005383;2.74e-12;3!UBERON:0005382;2.74e-12;3!UBERON:0000369;1.50e-09;4!UBERON:0002435;1.50e-09;4!UBERON:0000204;1.50e-09;4!UBERON:0002791;4.87e-09;32!UBERON:0002021;6.78e-08;5!UBERON:0003528;1.87e-07;34!UBERON:0002020;1.87e-07;34 | |ontology_enrichment_uberon_v019=UBERON:0001874;5.97e-34;1!UBERON:0002038;5.97e-34;1!UBERON:0009661;5.97e-34;1!UBERON:0002950;5.97e-34;1!UBERON:0001891;5.97e-34;1!UBERON:0009663;9.48e-20;7!UBERON:0002420;1.31e-15;9!UBERON:0000125;1.31e-15;9!UBERON:0007245;1.31e-15;9!UBERON:0002308;1.31e-15;9!UBERON:0010009;1.31e-15;9!UBERON:0010011;1.31e-15;9!UBERON:0000454;1.31e-15;9!UBERON:0005383;2.74e-12;3!UBERON:0005382;2.74e-12;3!UBERON:0000369;1.50e-09;4!UBERON:0002435;1.50e-09;4!UBERON:0000204;1.50e-09;4!UBERON:0002791;4.87e-09;32!UBERON:0002021;6.78e-08;5!UBERON:0003528;1.87e-07;34!UBERON:0002020;1.87e-07;34 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001874,7.06e-34,1;UBERON:0002038,9.85e-34,1;UBERON:0009661,9.85e-34,1;UBERON:0002950,9.85e-34,1;UBERON:0001891,9.85e-34,1;UBERON:0009616,9.85e-34,1;UBERON:0010286,9.85e-34,1;UBERON:0009663,1.15e-19,7;UBERON:0002420,1.52e-15,9;UBERON:0000125,1.52e-15,9;UBERON:0007245,1.52e-15,9;UBERON:0002308,1.52e-15,9;UBERON:0010009,1.52e-15,9;UBERON:0010011,1.52e-15,9;UBERON:0000454,1.52e-15,9;UBERON:0005383,2.89e-12,3;UBERON:0005382,2.89e-12,3;UBERON:0002791,1.02e-09,32;UBERON:0000369,1.57e-09,4;UBERON:0002435,1.57e-09,4;UBERON:0000204,1.57e-09,4;UBERON:0010082,1.57e-09,4;UBERON:0003528,3.33e-09,34;UBERON:0002020,3.33e-09,34;UBERON:0001893,3.33e-09,34;UBERON:0002021,6.13e-08,5;UBERON:0002780,8.72e-08,41;UBERON:0001890,8.72e-08,41;UBERON:0003080,8.72e-08,41;UBERON:0006240,8.72e-08,41 | |||
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| ||
|short_description=p@chr2:166529664..166529668,+ | |short_description=p@chr2:166529664..166529668,+ | ||
}} | }} |
Latest revision as of 02:06, 29 July 2015
Short description: | p@chr2:166529664..166529668, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:166529664..166529668, + |
Coexpression cluster: | C377_pituitary_small_smallcell_cerebellum_pineal_pons_neuroblastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
putamen | 7.06e-34 | 1 |
substantia nigra | 9.85e-34 | 1 |
midbrain nucleus | 9.85e-34 | 1 |
regional part of midbrain | 9.85e-34 | 1 |
midbrain | 9.85e-34 | 1 |
presumptive midbrain | 9.85e-34 | 1 |
midbrain neural tube | 9.85e-34 | 1 |
telencephalic nucleus | 1.15e-19 | 7 |
basal ganglion | 1.52e-15 | 9 |
neural nucleus | 1.52e-15 | 9 |
nuclear complex of neuraxis | 1.52e-15 | 9 |
nucleus of brain | 1.52e-15 | 9 |
aggregate regional part of brain | 1.52e-15 | 9 |
collection of basal ganglia | 1.52e-15 | 9 |
cerebral subcortex | 1.52e-15 | 9 |
caudate-putamen | 2.89e-12 | 3 |
dorsal striatum | 2.89e-12 | 3 |
regional part of telencephalon | 1.02e-09 | 32 |
corpus striatum | 1.57e-09 | 4 |
striatum | 1.57e-09 | 4 |
ventral part of telencephalon | 1.57e-09 | 4 |
future corpus striatum | 1.57e-09 | 4 |
brain grey matter | 3.33e-09 | 34 |
gray matter | 3.33e-09 | 34 |
telencephalon | 3.33e-09 | 34 |
occipital lobe | 6.13e-08 | 5 |
regional part of forebrain | 8.72e-08 | 41 |
forebrain | 8.72e-08 | 41 |
anterior neural tube | 8.72e-08 | 41 |
future forebrain | 8.72e-08 | 41 |
Ontology term | p-value | n |
---|---|---|
mixed cell type cancer | 9.07e-18 | 2 |
carcinosarcoma | 9.07e-18 | 2 |
gastrointestinal system cancer | 1.57e-10 | 14 |