FFCP PHASE1:Hg19::chr21:34144115..34144138,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr21:34144115..34144138,-
|short_description=p2@GCFC1
|description=CAGE_peak_2_at_GCFC1_5end
|association_with_transcript=-12bp_to_ENST00000464256_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=94104 | |EntrezGene=94104 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13579 | |HGNC=13579 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_ENST00000464256_5end | |||
|cluster_id=chr21:34144115..34144138,- | |||
|description=CAGE_peak_2_at_GCFC1_5end | |||
|id=chr21:34144115..34144138,- | |||
|ontology_enrichment_celltype=CL:0000037!1.56e-08!172;CL:0000566!1.56e-08!172;CL:0002032!1.75e-07!165;CL:0000837!1.75e-07!165;CL:0000988!5.30e-07!182 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,6.83e-08,168;CL:0002032,7.29e-07,161;CL:0000837,7.29e-07,161 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.85e-26!235;DOID:14566!7.22e-25!239;DOID:0050687!1.32e-16!143;DOID:0050686!3.76e-13!137;DOID:2531!8.13e-12!51;DOID:0060083!8.13e-12!51;DOID:1240!2.22e-11!39;DOID:305!2.31e-11!106;DOID:8692!3.03e-09!31;DOID:3095!1.29e-08!22;DOID:2994!1.29e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:1240;1.91e-09;39!DOID:3095;4.06e-09;22!DOID:2994;4.06e-09;22!DOID:8692;4.25e-09;31!DOID:2531;4.26e-08;51!DOID:0060083;4.26e-08;51!DOID:171;9.05e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:162,4.32e-25,235;DOID:14566,8.76e-24,239;DOID:0050687,4.58e-16,143;DOID:0050686,3.10e-12,137;DOID:2531,6.47e-12,51;DOID:0060083,6.47e-12,51;DOID:1240,1.30e-11,39;DOID:305,4.83e-11,106;DOID:8692,1.99e-09,31;DOID:3095,6.64e-09,22;DOID:2994,6.64e-09,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!8.88e-13!94;UBERON:0001016!8.88e-13!94;UBERON:0001017!1.17e-11!82;UBERON:0005743!3.65e-11!86;UBERON:0002780!6.47e-10!41;UBERON:0001890!6.47e-10!41;UBERON:0006240!6.47e-10!41;UBERON:0003080!1.25e-09!42;UBERON:0001049!3.05e-09!57;UBERON:0005068!3.05e-09!57;UBERON:0006241!3.05e-09!57;UBERON:0007135!3.05e-09!57;UBERON:0000955!4.68e-09!69;UBERON:0006238!4.68e-09!69;UBERON:0002346!4.84e-08!90;UBERON:0001893!2.19e-07!34;UBERON:0002616!3.13e-07!59;UBERON:0002020!3.19e-07!34;UBERON:0003528!3.19e-07!34;UBERON:0002791!3.33e-07!33;UBERON:0001869!7.00e-07!32;UBERON:0003075!9.98e-07!86;UBERON:0007284!9.98e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.05e-07;41!UBERON:0001890;4.05e-07;41!UBERON:0001893;9.96e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.37e-13,89;UBERON:0001017,1.10e-11,81;UBERON:0002780,4.09e-10,41;UBERON:0001890,4.09e-10,41;UBERON:0003080,4.09e-10,41;UBERON:0006240,4.09e-10,41;UBERON:0001049,1.65e-09,56;UBERON:0005068,1.65e-09,56;UBERON:0006241,1.65e-09,56;UBERON:0007135,1.65e-09,56;UBERON:0000073,2.23e-09,53;UBERON:0002616,2.23e-09,53;UBERON:0000955,3.98e-09,68;UBERON:0006238,3.98e-09,68;UBERON:0001893,1.58e-07,34;UBERON:0003528,2.33e-07,34;UBERON:0002020,2.33e-07,34;UBERON:0011216,3.00e-07,223;UBERON:0002346,3.69e-07,86;UBERON:0002791,4.55e-07,32;UBERON:0001869,5.21e-07,32 | |||
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| ||
|short_description=p2@GCFC1 | |||
}} | }} |
Latest revision as of 03:37, 18 September 2015
Short description: | p2@GCFC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GCFC1_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000464256_5end |
EntrezGene: | GCFC1 |
HGNC: | 13579 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 6.83e-08 | 168 |
hematopoietic oligopotent progenitor cell | 7.29e-07 | 161 |
hematopoietic multipotent progenitor cell | 7.29e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.37e-13 | 89 |
central nervous system | 1.10e-11 | 81 |
regional part of forebrain | 4.09e-10 | 41 |
forebrain | 4.09e-10 | 41 |
anterior neural tube | 4.09e-10 | 41 |
future forebrain | 4.09e-10 | 41 |
neural tube | 1.65e-09 | 56 |
neural rod | 1.65e-09 | 56 |
future spinal cord | 1.65e-09 | 56 |
neural keel | 1.65e-09 | 56 |
regional part of nervous system | 2.23e-09 | 53 |
regional part of brain | 2.23e-09 | 53 |
brain | 3.98e-09 | 68 |
future brain | 3.98e-09 | 68 |
telencephalon | 1.58e-07 | 34 |
brain grey matter | 2.33e-07 | 34 |
gray matter | 2.33e-07 | 34 |
organ system subdivision | 3.00e-07 | 223 |
neurectoderm | 3.69e-07 | 86 |
regional part of telencephalon | 4.55e-07 | 32 |
cerebral hemisphere | 5.21e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
cancer | 4.32e-25 | 235 |
disease of cellular proliferation | 8.76e-24 | 239 |
cell type cancer | 4.58e-16 | 143 |
organ system cancer | 3.10e-12 | 137 |
hematologic cancer | 6.47e-12 | 51 |
immune system cancer | 6.47e-12 | 51 |
leukemia | 1.30e-11 | 39 |
carcinoma | 4.83e-11 | 106 |
myeloid leukemia | 1.99e-09 | 31 |
germ cell and embryonal cancer | 6.64e-09 | 22 |
germ cell cancer | 6.64e-09 | 22 |