FFCP PHASE1:Hg19::chr17:47039342..47039353,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:47039342..47039353,- | |||
|description=CAGE_peak_at_chr17:47039342..47039353,- | |description=CAGE_peak_at_chr17:47039342..47039353,- | ||
|id=chr17:47039342..47039353,- | |id=chr17:47039342..47039353,- | ||
|ontology_enrichment_celltype=CL:0000055!1.68e-15!180;CL:0000680!2.14e-10!57;CL:0000056!2.14e-10!57;CL:0000355!2.14e-10!57;CL:0000220!3.19e-10!246;CL:0002321!5.17e-10!248;CL:0000187!3.76e-09!54;CL:0000144!6.04e-09!625;CL:0000183!8.50e-09!59;CL:0000077!9.76e-09!19;CL:0000393!1.71e-08!60;CL:0000211!1.71e-08!60;CL:0000222!2.73e-08!119;CL:0000548!2.86e-08!679;CL:0000004!2.86e-08!679;CL:0000255!2.86e-08!679;CL:0000012!4.24e-08!682;CL:0000243!4.79e-08!15;CL:0000125!4.79e-08!15;CL:0000030!4.79e-08!15;CL:0000339!4.79e-08!15;CL:0000095!5.85e-07!17;CL:0000123!5.85e-07!17 | |ontology_enrichment_celltype=CL:0000055!1.68e-15!180;CL:0000680!2.14e-10!57;CL:0000056!2.14e-10!57;CL:0000355!2.14e-10!57;CL:0000220!3.19e-10!246;CL:0002321!5.17e-10!248;CL:0000187!3.76e-09!54;CL:0000144!6.04e-09!625;CL:0000183!8.50e-09!59;CL:0000077!9.76e-09!19;CL:0000393!1.71e-08!60;CL:0000211!1.71e-08!60;CL:0000222!2.73e-08!119;CL:0000548!2.86e-08!679;CL:0000004!2.86e-08!679;CL:0000255!2.86e-08!679;CL:0000012!4.24e-08!682;CL:0000243!4.79e-08!15;CL:0000125!4.79e-08!15;CL:0000030!4.79e-08!15;CL:0000339!4.79e-08!15;CL:0000095!5.85e-07!17;CL:0000123!5.85e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0002569;1.81e-25;6!CL:0000228;9.48e-18;1!CL:0002372;9.48e-18;1!CL:0002363;9.87e-10;2!CL:0000349;1.74e-08;19!CL:0002564;8.86e-07;3 | |ontology_enrichment_celltype_v019=CL:0002569;1.81e-25;6!CL:0000228;9.48e-18;1!CL:0002372;9.48e-18;1!CL:0002363;9.87e-10;2!CL:0000349;1.74e-08;19!CL:0002564;8.86e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002569,1.67e-25,6;CL:0000228,1.22e-17,1;CL:0002372,1.22e-17,1;CL:0002363,1.03e-09,2;CL:0000008,1.03e-09,2;CL:0000349,1.70e-08,19 | |||
|ontology_enrichment_development_v019=CL:0000008;9.87e-10;2!UBERON:0006238;6.54e-07;10 | |ontology_enrichment_development_v019=CL:0000008;9.87e-10;2!UBERON:0006238;6.54e-07;10 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3307;1.51e-09;2 | |ontology_enrichment_disease_v019=DOID:3307;1.51e-09;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3307,1.12e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0001134!2.76e-09!61;UBERON:0002036!2.76e-09!61;UBERON:0003082!2.76e-09!61;UBERON:0002385!8.66e-09!63;UBERON:0001015!8.66e-09!63;UBERON:0000383!8.66e-09!63;UBERON:0004290!2.70e-07!70 | |ontology_enrichment_uberon=UBERON:0001134!2.76e-09!61;UBERON:0002036!2.76e-09!61;UBERON:0003082!2.76e-09!61;UBERON:0002385!8.66e-09!63;UBERON:0001015!8.66e-09!63;UBERON:0000383!8.66e-09!63;UBERON:0004290!2.70e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0003422;1.81e-25;6!UBERON:0003104;6.11e-22;7!UBERON:0009142;6.11e-22;7!UBERON:0002331;1.42e-15;10!UBERON:0003566;9.87e-10;2!UBERON:0001777;9.87e-10;2!UBERON:0000478;7.93e-07;24!UBERON:0002242;8.86e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0003422;1.81e-25;6!UBERON:0003104;6.11e-22;7!UBERON:0009142;6.11e-22;7!UBERON:0002331;1.42e-15;10!UBERON:0003566;9.87e-10;2!UBERON:0001777;9.87e-10;2!UBERON:0000478;7.93e-07;24!UBERON:0002242;8.86e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003422,1.67e-25,6;UBERON:0002331,1.36e-15,10;UBERON:0000358,1.36e-15,10;UBERON:0000307,1.36e-15,10;UBERON:0000091,1.36e-15,10;UBERON:0000087,1.36e-15,10;UBERON:0007010,1.36e-15,10;UBERON:0007806,1.36e-15,10;UBERON:0008780,1.36e-15,10;UBERON:0005728,1.36e-15,10;UBERON:0003566,1.03e-09,2;UBERON:0001777,1.03e-09,2;UBERON:0000478,7.77e-07,24 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.618831764800233,0,0,0,0,0,0,0.612002073732759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0.144846518960824,0.795285947051099,0,0.283604451492204,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0.201504196455281,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0.0925884451585296,0.325808305310325,2.07986957055916,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0.257207374262142,0,0.266422179016099,0,4.34097284313154,1.64648067356154,0,0,1.58390374586686,0.301439377059586,3.48613383440118,1.19967589418468,0,0,2.10833939483032,0,0,1.42636905040718,0.144781306667579,0,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0.256278298511402,0,0.321707842287215,0,0.154209693802656,0.177561725313127,0.492762936082855,0.519254429183621,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0.214840489736547,0.580066775656914,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0.511795582622668,0,0,0,0.719489830333259,0.274537029736055,0.824686816419805,0.404364963146632,0,0,0.975267478179181,0.243713489631284,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0.563391205064483,0.573645408816206,0.785992328104969,0,0.354761064070598,0,0,0,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511343412510774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0.0801588202515337,0,0,0,0,0,0,0.124252535565433,0,1.63085047288337,1.67364554099733,0.101998217636322,0.577901179803038,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0.236349546921671,0.164831716762333,0.13480708770837,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681552087141687,0.226624183040251,0,0,0,0,0.513260513652988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0.74627401443437,0,0,0,0,0,0,0.151230923763239,0.15543720058278,0,0.159296767163702,0,0.310525913752519,0.414706207840855,0.265841714557995,0,0.450772826991655,0,0.813741466409323,0,0.214821114084977,0,0,0.400027764663154,0.343395705182793,0.673498977531838,0,0.57785949122191,0,0,0.226705925512272,0,0,0.179088841081487,0.617602894321944,0.877136198314828,0.353378291891762,0,0.168942440653073,0,0.345430341731199,0,0,0,0,0,0.327609848846413,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0.318004350653419,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473328002922261,0.170426809518315,0,0,0.93061915699296,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9307228228694,0,0,0,0,0,0,0 | |phase1_expression=0.54503513781167,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0.618831764800233,0,0,0,0,0,0,0.612002073732759,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0,0,0,0.144846518960824,0.795285947051099,0,0.283604451492204,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0.226864366320042,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0,0,0.0920498986422993,0,0,0.201504196455281,0.508681776931463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0.0925884451585296,0.325808305310325,2.07986957055916,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,0,0.257207374262142,0,0.266422179016099,0,4.34097284313154,1.64648067356154,0,0,1.58390374586686,0.301439377059586,3.48613383440118,1.19967589418468,0,0,2.10833939483032,0,0,1.42636905040718,0.144781306667579,0,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,1.00034104211935,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.306923946576125,0,0.256278298511402,0,0.321707842287215,0,0.154209693802656,0.177561725313127,0.492762936082855,0.519254429183621,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0.214840489736547,0.580066775656914,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0,0.511795582622668,0,0,0,0.719489830333259,0.274537029736055,0.824686816419805,0.404364963146632,0,0,0.975267478179181,0.243713489631284,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0.563391205064483,0.573645408816206,0.785992328104969,0,0.354761064070598,0,0,0,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511343412510774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569219092059585,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397429223405979,0,0,0.0801588202515337,0,0,0,0,0,0,0.124252535565433,0,1.63085047288337,1.67364554099733,0.101998217636322,0.577901179803038,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0.236349546921671,0.164831716762333,0.13480708770837,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.681552087141687,0.226624183040251,0,0,0,0,0.513260513652988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0.74627401443437,0,0,0,0,0,0,0.151230923763239,0.15543720058278,0,0.159296767163702,0,0.310525913752519,0.414706207840855,0.265841714557995,0,0.450772826991655,0,0.813741466409323,0,0.214821114084977,0,0,0.400027764663154,0.343395705182793,0.673498977531838,0,0.57785949122191,0,0,0.226705925512272,0,0,0.179088841081487,0.617602894321944,0.877136198314828,0.353378291891762,0,0.168942440653073,0,0.345430341731199,0,0,0,0,0,0.327609848846413,0.491545817507439,0,0,0,0,0,0,0,0,0,0,0,0.109209638192014,0,0,0,0,0.318004350653419,0,0,0,0.3062454773532,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0.295712172434091,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0887023701626388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473328002922261,0.170426809518315,0,0,0.93061915699296,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.9307228228694,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:47039342..47039353,- | |short_description=p@chr17:47039342..47039353,- | ||
}} | }} |
Latest revision as of 18:17, 25 July 2015
Short description: | p@chr17:47039342..47039353, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:47039342..47039353, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesenchymal stem cell of umbilical cord | 1.67e-25 | 6 |
multinucleate cell | 1.22e-17 | 1 |
myotube | 1.22e-17 | 1 |
keratocyte | 1.03e-09 | 2 |
migratory cranial neural crest cell | 1.03e-09 | 2 |
extraembryonic cell | 1.70e-08 | 19 |
Ontology term | p-value | n |
---|---|---|
mesenchyme of umbilical cord | 1.67e-25 | 6 |
umbilical cord | 1.36e-15 | 10 |
blastocyst | 1.36e-15 | 10 |
blastula | 1.36e-15 | 10 |
bilaminar disc | 1.36e-15 | 10 |
inner cell mass | 1.36e-15 | 10 |
cleaving embryo | 1.36e-15 | 10 |
connecting stalk | 1.36e-15 | 10 |
inner cell mass derived epiblast | 1.36e-15 | 10 |
extraembryonic mesoderm | 1.36e-15 | 10 |
head connective tissue | 1.03e-09 | 2 |
substantia propria of cornea | 1.03e-09 | 2 |
extraembryonic structure | 7.77e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
teratoma | 1.12e-09 | 2 |