FFCP PHASE1:Hg19::chr14:35761514..35761525,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5687 | |EntrezGene=5687 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9535 | |HGNC=9535 | ||
|TSSclassifier=strong | |||
|UniProt=G3V4S5 | |UniProt=G3V4S5 | ||
|association_with_transcript=-29bp_to_ENST00000554541_5end | |association_with_transcript=-29bp_to_ENST00000554541_5end | ||
|cluster_id=chr14:35761514..35761525,+ | |||
|description=CAGE_peak_3_at_PSMA6_5end | |description=CAGE_peak_3_at_PSMA6_5end | ||
|id=chr14:35761514..35761525,+ | |id=chr14:35761514..35761525,+ | ||
|ontology_enrichment_celltype=CL:0000222!1.79e-14!119;CL:0002139!2.77e-12!24;CL:0000220!6.88e-11!246;CL:0002321!8.81e-11!248;CL:0000012!2.84e-09!682;CL:0000115!3.68e-09!35;CL:0000071!5.63e-09!18;CL:0002546!5.63e-09!18;CL:0000548!2.57e-08!679;CL:0000004!2.57e-08!679;CL:0000255!2.57e-08!679;CL:0000359!3.60e-08!32;CL:0000393!4.78e-08!60;CL:0000211!4.78e-08!60;CL:0002078!8.99e-08!44;CL:0000680!1.11e-07!57;CL:0000056!1.11e-07!57;CL:0000355!1.11e-07!57;CL:0000192!1.31e-07!42;CL:0000514!1.31e-07!42;CL:0000213!2.41e-07!57;CL:0000215!2.41e-07!57;CL:0000076!3.10e-07!62;CL:0000187!3.80e-07!54 | |ontology_enrichment_celltype=CL:0000222!1.79e-14!119;CL:0002139!2.77e-12!24;CL:0000220!6.88e-11!246;CL:0002321!8.81e-11!248;CL:0000012!2.84e-09!682;CL:0000115!3.68e-09!35;CL:0000071!5.63e-09!18;CL:0002546!5.63e-09!18;CL:0000548!2.57e-08!679;CL:0000004!2.57e-08!679;CL:0000255!2.57e-08!679;CL:0000359!3.60e-08!32;CL:0000393!4.78e-08!60;CL:0000211!4.78e-08!60;CL:0002078!8.99e-08!44;CL:0000680!1.11e-07!57;CL:0000056!1.11e-07!57;CL:0000355!1.11e-07!57;CL:0000192!1.31e-07!42;CL:0000514!1.31e-07!42;CL:0000213!2.41e-07!57;CL:0000215!2.41e-07!57;CL:0000076!3.10e-07!62;CL:0000187!3.80e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.04e-12;24!CL:0000071;2.98e-09;18!CL:0000359;2.12e-08;32!CL:0000115;3.33e-08;36 | |ontology_enrichment_celltype_v019=CL:0002139;1.04e-12;24!CL:0000071;2.98e-09;18!CL:0000359;2.12e-08;32!CL:0000115;3.33e-08;36 | ||
|ontology_enrichment_celltype_v019_2=CL:0000222,4.14e-15,121;CL:0002139,1.27e-12,24;CL:0002321,1.73e-10,250;CL:0000115,1.30e-09,36;CL:0000071,3.28e-09,18;CL:0002546,3.28e-09,18;CL:0000393,2.30e-08,61;CL:0000211,2.30e-08,61;CL:0000359,2.49e-08,32;CL:0002078,4.82e-08,45;CL:0000680,5.50e-08,58;CL:0000056,5.50e-08,58;CL:0000355,5.50e-08,58;CL:0000192,1.34e-07,43;CL:0000514,1.34e-07,43;CL:0000213,1.40e-07,58;CL:0000215,1.40e-07,58;CL:0000187,1.96e-07,55;CL:0000076,3.40e-07,63 | |||
|ontology_enrichment_development_v019=CL:0002546;2.98e-09;18 | |ontology_enrichment_development_v019=CL:0002546;2.98e-09;18 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000055!1.84e-13!69;UBERON:0002049!2.44e-13!79;UBERON:0007798!2.44e-13!79;UBERON:0001981!4.59e-12!60;UBERON:0007500!4.59e-12!60;UBERON:0004537!4.59e-12!60;UBERON:0006965!4.59e-12!60;UBERON:0004872!5.13e-09!84;UBERON:0001986!5.63e-09!18;UBERON:0004638!5.63e-09!18;UBERON:0004852!5.63e-09!18;UBERON:0001637!7.12e-09!42;UBERON:0003509!7.12e-09!42;UBERON:0004572!7.12e-09!42;UBERON:0000490!8.42e-08!138;UBERON:0003914!1.29e-07!118;UBERON:0004535!2.28e-07!110;UBERON:0004573!2.66e-07!33;UBERON:0004571!2.66e-07!33;UBERON:0001009!2.79e-07!113;UBERON:0001134!4.56e-07!61;UBERON:0002036!4.56e-07!61;UBERON:0003082!4.56e-07!61;UBERON:0000487!6.88e-07!22;UBERON:0000477!7.57e-07!286 | |ontology_enrichment_uberon=UBERON:0000055!1.84e-13!69;UBERON:0002049!2.44e-13!79;UBERON:0007798!2.44e-13!79;UBERON:0001981!4.59e-12!60;UBERON:0007500!4.59e-12!60;UBERON:0004537!4.59e-12!60;UBERON:0006965!4.59e-12!60;UBERON:0004872!5.13e-09!84;UBERON:0001986!5.63e-09!18;UBERON:0004638!5.63e-09!18;UBERON:0004852!5.63e-09!18;UBERON:0001637!7.12e-09!42;UBERON:0003509!7.12e-09!42;UBERON:0004572!7.12e-09!42;UBERON:0000490!8.42e-08!138;UBERON:0003914!1.29e-07!118;UBERON:0004535!2.28e-07!110;UBERON:0004573!2.66e-07!33;UBERON:0004571!2.66e-07!33;UBERON:0001009!2.79e-07!113;UBERON:0001134!4.56e-07!61;UBERON:0002036!4.56e-07!61;UBERON:0003082!4.56e-07!61;UBERON:0000487!6.88e-07!22;UBERON:0000477!7.57e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.98e-09;18!UBERON:0001986;2.98e-09;18!UBERON:0004852;2.98e-09;18!UBERON:0007500;2.32e-08;56!UBERON:0001981;2.32e-08;56!UBERON:0004537;2.32e-08;56!UBERON:0000055;3.49e-08;65!UBERON:0000487;1.39e-07;22!UBERON:0002049;1.56e-07;75!UBERON:0007798;1.56e-07;75!UBERON:0001637;2.29e-07;42!UBERON:0003509;2.29e-07;42!UBERON:0004572;2.29e-07;42!UBERON:0004573;3.19e-07;33!UBERON:0004571;3.19e-07;33!UBERON:0001737;5.34e-07;9!UBERON:0001557;5.34e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0004638;2.98e-09;18!UBERON:0001986;2.98e-09;18!UBERON:0004852;2.98e-09;18!UBERON:0007500;2.32e-08;56!UBERON:0001981;2.32e-08;56!UBERON:0004537;2.32e-08;56!UBERON:0000055;3.49e-08;65!UBERON:0000487;1.39e-07;22!UBERON:0002049;1.56e-07;75!UBERON:0007798;1.56e-07;75!UBERON:0001637;2.29e-07;42!UBERON:0003509;2.29e-07;42!UBERON:0004572;2.29e-07;42!UBERON:0004573;3.19e-07;33!UBERON:0004571;3.19e-07;33!UBERON:0001737;5.34e-07;9!UBERON:0001557;5.34e-07;9 | ||
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| ||
|short_description=p3@PSMA6 | |short_description=p3@PSMA6 | ||
}} | }} |
Latest revision as of 20:22, 19 September 2015
Short description: | p3@PSMA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PSMA6_5end |
Coexpression cluster: | NA |
Association with transcript: | -29bp_to_ENST00000554541_5end |
EntrezGene: | PSMA6 |
HGNC: | 9535 |
UniProt: | G3V4S5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 4.14e-15 | 121 |
endothelial cell of vascular tree | 1.27e-12 | 24 |
embryonic cell | 1.73e-10 | 250 |
endothelial cell | 1.30e-09 | 36 |
blood vessel endothelial cell | 3.28e-09 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.28e-09 | 18 |
electrically responsive cell | 2.30e-08 | 61 |
electrically active cell | 2.30e-08 | 61 |
vascular associated smooth muscle cell | 2.49e-08 | 32 |
meso-epithelial cell | 4.82e-08 | 45 |
muscle precursor cell | 5.50e-08 | 58 |
myoblast | 5.50e-08 | 58 |
multi-potent skeletal muscle stem cell | 5.50e-08 | 58 |
smooth muscle cell | 1.34e-07 | 43 |
smooth muscle myoblast | 1.34e-07 | 43 |
lining cell | 1.40e-07 | 58 |
barrier cell | 1.40e-07 | 58 |
muscle cell | 1.96e-07 | 55 |
squamous epithelial cell | 3.40e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
vessel | 6.58e-15 | 68 |
vasculature | 1.16e-14 | 78 |
vascular system | 1.16e-14 | 78 |
epithelial tube open at both ends | 4.04e-13 | 59 |
blood vessel | 4.04e-13 | 59 |
blood vasculature | 4.04e-13 | 59 |
vascular cord | 4.04e-13 | 59 |
splanchnic layer of lateral plate mesoderm | 4.03e-10 | 83 |
artery | 3.04e-09 | 42 |
arterial blood vessel | 3.04e-09 | 42 |
arterial system | 3.04e-09 | 42 |
blood vessel endothelium | 3.28e-09 | 18 |
endothelium | 3.28e-09 | 18 |
cardiovascular system endothelium | 3.28e-09 | 18 |
cardiovascular system | 1.01e-08 | 109 |
circulatory system | 1.31e-08 | 112 |
epithelial tube | 2.59e-08 | 117 |
systemic artery | 1.27e-07 | 33 |
systemic arterial system | 1.27e-07 | 33 |
unilaminar epithelium | 1.47e-07 | 148 |
skeletal muscle tissue | 1.77e-07 | 62 |
striated muscle tissue | 1.77e-07 | 62 |
myotome | 1.77e-07 | 62 |
simple squamous epithelium | 1.83e-07 | 22 |
epithelial vesicle | 3.83e-07 | 78 |
larynx | 7.56e-07 | 9 |
muscle tissue | 8.79e-07 | 64 |
musculature | 8.79e-07 | 64 |
musculature of body | 8.79e-07 | 64 |