FFCP PHASE1:Hg19::chr4:15920342..15920362,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:15920342..15920362,+ | |||
|coexpression_cluster_id=C4384 | |coexpression_cluster_id=C4384 | ||
|description=CAGE_peak_at_chr4:15920342..15920362,+ | |description=CAGE_peak_at_chr4:15920342..15920362,+ | ||
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|ontology_enrichment_celltype=CL:0002076!3.19e-40!43;CL:0000066!5.47e-34!254;CL:0000223!2.87e-29!59;CL:0002368!1.88e-22!13;CL:0002251!3.09e-15!21;CL:0000076!1.59e-14!62;CL:0002202!6.48e-14!9;CL:0002632!6.48e-14!9;CL:0000220!3.76e-10!246;CL:0002321!5.57e-10!248;CL:0002159!1.12e-09!13;CL:0002621!2.76e-09!3;CL:0000068!8.18e-09!3;CL:0000069!8.18e-09!3;CL:0000307!8.18e-09!3;CL:0000377!8.18e-09!3;CL:0002328!1.27e-08!3;CL:0000240!1.01e-07!6;CL:0000311!1.01e-07!6;CL:0000079!1.01e-07!6;CL:0000237!1.01e-07!6;CL:0000036!1.01e-07!6;CL:0000357!1.01e-07!6;CL:0000114!1.01e-07!6;CL:0000063!1.60e-07!578;CL:0000575!8.49e-07!2 | |ontology_enrichment_celltype=CL:0002076!3.19e-40!43;CL:0000066!5.47e-34!254;CL:0000223!2.87e-29!59;CL:0002368!1.88e-22!13;CL:0002251!3.09e-15!21;CL:0000076!1.59e-14!62;CL:0002202!6.48e-14!9;CL:0002632!6.48e-14!9;CL:0000220!3.76e-10!246;CL:0002321!5.57e-10!248;CL:0002159!1.12e-09!13;CL:0002621!2.76e-09!3;CL:0000068!8.18e-09!3;CL:0000069!8.18e-09!3;CL:0000307!8.18e-09!3;CL:0000377!8.18e-09!3;CL:0002328!1.27e-08!3;CL:0000240!1.01e-07!6;CL:0000311!1.01e-07!6;CL:0000079!1.01e-07!6;CL:0000237!1.01e-07!6;CL:0000036!1.01e-07!6;CL:0000357!1.01e-07!6;CL:0000114!1.01e-07!6;CL:0000063!1.60e-07!578;CL:0000575!8.49e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002368;3.31e-27;13!CL:0002076;1.73e-25;42!CL:0002202;1.55e-22;9!CL:0002632;1.55e-22;9!CL:0002621;7.82e-19;3!CL:0000307;6.66e-18;3!CL:0002159;3.08e-15;14!CL:0000575;3.15e-13;2!CL:0000312;9.39e-12;5!CL:0002251;3.12e-10;20!CL:0000240;7.15e-10;6!CL:0000311;7.15e-10;6!CL:0000079;7.15e-10;6!CL:0000237;7.15e-10;6!CL:0000239;1.06e-08;3!CL:1000615;1.06e-08;3!CL:0002306;1.06e-08;3!CL:0002328;1.62e-08;3!CL:0002077;1.83e-07;34!CL:0002252;5.34e-07;1 | |ontology_enrichment_celltype_v019=CL:0002368;3.31e-27;13!CL:0002076;1.73e-25;42!CL:0002202;1.55e-22;9!CL:0002632;1.55e-22;9!CL:0002621;7.82e-19;3!CL:0000307;6.66e-18;3!CL:0002159;3.08e-15;14!CL:0000575;3.15e-13;2!CL:0000312;9.39e-12;5!CL:0002251;3.12e-10;20!CL:0000240;7.15e-10;6!CL:0000311;7.15e-10;6!CL:0000079;7.15e-10;6!CL:0000237;7.15e-10;6!CL:0000239;1.06e-08;3!CL:1000615;1.06e-08;3!CL:0002306;1.06e-08;3!CL:0002328;1.62e-08;3!CL:0002077;1.83e-07;34!CL:0002252;5.34e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.14e-32,42;CL:0002368,3.56e-27,13;CL:0002202,1.38e-22,9;CL:0002632,1.38e-22,9;CL:0000223,1.54e-22,58;CL:0000066,2.28e-21,253;CL:0002621,6.34e-19,3;CL:0000068,7.28e-18,3;CL:0000069,7.28e-18,3;CL:0000307,7.28e-18,3;CL:0000377,7.28e-18,3;CL:0002159,2.86e-15,14;CL:0000575,2.40e-13,2;CL:0000312,9.40e-12,5;CL:0002251,2.75e-10,20;CL:0000240,7.16e-10,6;CL:0000311,7.16e-10,6;CL:0000079,7.16e-10,6;CL:0000237,7.16e-10,6;CL:0000036,7.16e-10,6;CL:0000357,7.16e-10,6;CL:0000114,7.16e-10,6;CL:0000076,1.37e-09,63;CL:0002321,1.41e-09,250;CL:0000239,1.29e-08,3;CL:1000615,1.29e-08,3;CL:0002306,1.29e-08,3;CL:0002328,1.56e-08,3;CL:0002077,7.27e-08,34;CL:0002252,4.89e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000377;6.66e-18;3!CL:0000223;3.03e-14;58!CL:0000357;7.15e-10;6!CL:0000114;7.15e-10;6 | |ontology_enrichment_development_v019=CL:0000377;6.66e-18;3!CL:0000223;3.03e-14;58!CL:0000357;7.15e-10;6!CL:0000114;7.15e-10;6 | ||
|ontology_enrichment_disease=DOID:1749!4.43e-17!14;DOID:305!3.13e-12!106;DOID:0050687!2.25e-09!143 | |ontology_enrichment_disease=DOID:1749!4.43e-17!14;DOID:305!3.13e-12!106;DOID:0050687!2.25e-09!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;5.46e-15;14!DOID:3111;1.27e-07;1!DOID:3603;1.27e-07;1 | |ontology_enrichment_disease_v019=DOID:1749;5.46e-15;14!DOID:3111;1.27e-07;1!DOID:3603;1.27e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,5.75e-15,14;DOID:3111,1.36e-07,1;DOID:3603,1.36e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001004!1.52e-15!72;UBERON:0004119!4.38e-14!169;UBERON:0000925!4.38e-14!169;UBERON:0006595!4.38e-14!169;UBERON:0000065!6.74e-11!53;UBERON:0007196!8.28e-11!14;UBERON:0001558!8.28e-11!14;UBERON:0005157!4.88e-10!51;UBERON:0001007!1.09e-09!155;UBERON:0001555!1.09e-09!155;UBERON:0007026!1.09e-09!155;UBERON:0001949!2.76e-09!3;UBERON:0003729!8.94e-09!5;UBERON:0004815!1.27e-08!3;UBERON:0002031!1.27e-08!3;UBERON:0005153!1.75e-08!37;UBERON:0008947!2.85e-08!38;UBERON:0003258!2.85e-08!38;UBERON:0005178!2.88e-08!34;UBERON:0002224!2.88e-08!34;UBERON:0005181!5.90e-08!35;UBERON:0000464!9.27e-08!104;UBERON:0000072!1.60e-07!46;UBERON:0004807!1.82e-07!28;UBERON:0005911!2.24e-07!82;UBERON:0000466!7.60e-07!126;UBERON:0000166!7.67e-07!21;UBERON:0001851!8.65e-07!16 | |ontology_enrichment_uberon=UBERON:0001004!1.52e-15!72;UBERON:0004119!4.38e-14!169;UBERON:0000925!4.38e-14!169;UBERON:0006595!4.38e-14!169;UBERON:0000065!6.74e-11!53;UBERON:0007196!8.28e-11!14;UBERON:0001558!8.28e-11!14;UBERON:0005157!4.88e-10!51;UBERON:0001007!1.09e-09!155;UBERON:0001555!1.09e-09!155;UBERON:0007026!1.09e-09!155;UBERON:0001949!2.76e-09!3;UBERON:0003729!8.94e-09!5;UBERON:0004815!1.27e-08!3;UBERON:0002031!1.27e-08!3;UBERON:0005153!1.75e-08!37;UBERON:0008947!2.85e-08!38;UBERON:0003258!2.85e-08!38;UBERON:0005178!2.88e-08!34;UBERON:0002224!2.88e-08!34;UBERON:0005181!5.90e-08!35;UBERON:0000464!9.27e-08!104;UBERON:0000072!1.60e-07!46;UBERON:0004807!1.82e-07!28;UBERON:0005911!2.24e-07!82;UBERON:0000466!7.60e-07!126;UBERON:0000166!7.67e-07!21;UBERON:0001851!8.65e-07!16 | ||
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| ||
|short_description=p@chr4:15920342..15920362,+ | |short_description=p@chr4:15920342..15920362,+ | ||
}} | }} |
Latest revision as of 02:47, 30 July 2015
Short description: | p@chr4:15920342..15920362, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:15920342..15920362, + |
Coexpression cluster: | C4384_squamous_oral_serous_Corneal_Gingival_bronchioalveolar_Keratinocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 6.34e-19 | 3 |
tracheobronchial tree | 2.33e-13 | 15 |
lower respiratory tract | 2.33e-13 | 15 |
mouth mucosa | 1.68e-11 | 13 |
respiratory system | 8.61e-11 | 74 |
mucosa | 1.93e-10 | 20 |
renal cortex tubule | 1.29e-08 | 3 |
region of nephron tubule | 1.29e-08 | 3 |
proximal tubule | 1.29e-08 | 3 |
lower respiratory tract epithelium | 1.56e-08 | 3 |
epithelium of bronchus | 1.56e-08 | 3 |
trachea | 5.96e-08 | 7 |
respiratory airway | 5.96e-08 | 7 |
mammalian vulva | 1.54e-07 | 1 |
external female genitalia | 1.54e-07 | 1 |
thoracic cavity element | 1.81e-07 | 34 |
thoracic cavity | 1.81e-07 | 34 |
epithelium of mucosa | 2.15e-07 | 8 |
gingiva | 2.15e-07 | 8 |
thoracic segment organ | 3.12e-07 | 35 |
respiratory tract | 3.45e-07 | 54 |
respiratory system epithelium | 4.11e-07 | 28 |
cornea | 4.35e-07 | 4 |
eye surface | 4.35e-07 | 4 |
optic eminence | 4.35e-07 | 4 |
corneal primordium | 4.35e-07 | 4 |
endoderm-derived structure | 5.86e-07 | 160 |
endoderm | 5.86e-07 | 160 |
presumptive endoderm | 5.86e-07 | 160 |
mucosa of oral region | 6.03e-07 | 4 |
respiratory system mucosa | 6.03e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.75e-15 | 14 |
cystadenocarcinoma | 1.36e-07 | 1 |
mucinous cystadenocarcinoma | 1.36e-07 | 1 |