FFCP PHASE1:Hg19::chr2:235591286..235591298,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:235591286..235591298,+ | |||
|coexpression_cluster_id=C839 | |coexpression_cluster_id=C839 | ||
|description=CAGE_peak_at_chr2:235591286..235591298,+ | |description=CAGE_peak_at_chr2:235591286..235591298,+ | ||
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|ontology_enrichment_celltype=CL:0002586!2.62e-14!3;CL:0000149!7.75e-11!4;CL:0000147!1.62e-07!14;CL:0002605!6.47e-07!3 | |ontology_enrichment_celltype=CL:0002586!2.62e-14!3;CL:0000149!7.75e-11!4;CL:0000147!1.62e-07!14;CL:0002605!6.47e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002586;2.19e-53;3!CL:0000149;2.22e-40;4!CL:0000128;1.44e-23;7!CL:0000126;1.44e-23;7!CL:0000127;1.44e-23;7!CL:0002605;1.83e-14;3!CL:0000147;2.24e-12;14!CL:0000306;3.42e-11;4!CL:0002222;3.42e-11;4!CL:0002224;3.42e-11;4!CL:0000243;2.35e-10;15!CL:0000125;2.35e-10;15!CL:0000095;2.26e-09;17!CL:0002319;7.03e-07;25 | |ontology_enrichment_celltype_v019=CL:0002586;2.19e-53;3!CL:0000149;2.22e-40;4!CL:0000128;1.44e-23;7!CL:0000126;1.44e-23;7!CL:0000127;1.44e-23;7!CL:0002605;1.83e-14;3!CL:0000147;2.24e-12;14!CL:0000306;3.42e-11;4!CL:0002222;3.42e-11;4!CL:0002224;3.42e-11;4!CL:0000243;2.35e-10;15!CL:0000125;2.35e-10;15!CL:0000095;2.26e-09;17!CL:0002319;7.03e-07;25 | ||
|ontology_enrichment_celltype_v019_2=CL:0002586,1.68e-53,3;CL:0000149,1.81e-40,4;CL:0000128,1.44e-23,7;CL:0000126,1.44e-23,7;CL:0000127,1.44e-23,7;CL:0002453,1.44e-23,7;CL:0002605,1.83e-14,3;CL:0000147,2.12e-12,14;CL:0000306,3.79e-11,4;CL:0002222,3.79e-11,4;CL:0002224,3.79e-11,4;CL:0000243,2.35e-10,15;CL:0000125,2.35e-10,15;CL:0000030,2.35e-10,15;CL:0000339,2.35e-10,15;CL:0000095,2.26e-09,17;CL:0000123,2.26e-09,17;CL:0002319,7.03e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000339;2.35e-10;15 | |ontology_enrichment_development_v019=CL:0000339;2.35e-10;15 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001781;2.19e-53;3!UBERON:0001782;2.19e-53;3!UBERON:0007625;5.34e-33;11!UBERON:0000966;1.44e-32;5!UBERON:0005388;1.44e-32;5!UBERON:0001802;1.44e-32;5!UBERON:0000019;1.58e-19;19!UBERON:0000047;1.58e-19;19!UBERON:0004088;1.58e-19;19!UBERON:0010230;1.58e-19;19!UBERON:0000970;1.34e-18;20!UBERON:0002104;9.30e-18;21!UBERON:0001456;9.30e-18;21!UBERON:0000020;2.71e-16;23!UBERON:0001032;1.19e-15;24!UBERON:0004456;1.19e-15;24!UBERON:0010371;2.07e-11;31!UBERON:0010077;3.42e-11;4!UBERON:0005389;3.42e-11;4!UBERON:0000484;3.42e-11;4!UBERON:0000965;3.42e-11;4!UBERON:0001803;3.42e-11;4!UBERON:0000033;4.73e-07;50!UBERON:0001444;6.69e-07;48 | |ontology_enrichment_uberon_v019=UBERON:0001781;2.19e-53;3!UBERON:0001782;2.19e-53;3!UBERON:0007625;5.34e-33;11!UBERON:0000966;1.44e-32;5!UBERON:0005388;1.44e-32;5!UBERON:0001802;1.44e-32;5!UBERON:0000019;1.58e-19;19!UBERON:0000047;1.58e-19;19!UBERON:0004088;1.58e-19;19!UBERON:0010230;1.58e-19;19!UBERON:0000970;1.34e-18;20!UBERON:0002104;9.30e-18;21!UBERON:0001456;9.30e-18;21!UBERON:0000020;2.71e-16;23!UBERON:0001032;1.19e-15;24!UBERON:0004456;1.19e-15;24!UBERON:0010371;2.07e-11;31!UBERON:0010077;3.42e-11;4!UBERON:0005389;3.42e-11;4!UBERON:0000484;3.42e-11;4!UBERON:0000965;3.42e-11;4!UBERON:0001803;3.42e-11;4!UBERON:0000033;4.73e-07;50!UBERON:0001444;6.69e-07;48 | ||
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| ||
|short_description=p@chr2:235591286..235591298,+ | |short_description=p@chr2:235591286..235591298,+ | ||
}} | }} |
Latest revision as of 08:03, 29 July 2015
Short description: | p@chr2:235591286..235591298, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:235591286..235591298, + |
Coexpression cluster: | C839_Retinal_Mallassezderived_retina_medulla_mesothelioma_osteosarcoma_Saos2 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 1.68e-53 | 3 |
visual pigment cell | 1.81e-40 | 4 |
oligodendrocyte | 1.44e-23 | 7 |
macroglial cell | 1.44e-23 | 7 |
astrocyte | 1.44e-23 | 7 |
oligodendrocyte precursor cell | 1.44e-23 | 7 |
astrocyte of the cerebral cortex | 1.83e-14 | 3 |
pigment cell | 2.12e-12 | 14 |
crystallin accumulating cell | 3.79e-11 | 4 |
vertebrate lens cell | 3.79e-11 | 4 |
lens epithelial cell | 3.79e-11 | 4 |
glial cell (sensu Vertebrata) | 2.35e-10 | 15 |
glial cell | 2.35e-10 | 15 |
glioblast | 2.35e-10 | 15 |
glioblast (sensu Vertebrata) | 2.35e-10 | 15 |
neuron associated cell | 2.26e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.26e-09 | 17 |
neural cell | 7.03e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 1.68e-53 | 3 |
presumptive retinal pigmented epithelium | 1.68e-53 | 3 |
layer of retina | 1.81e-40 | 4 |
pigment epithelium of eye | 5.35e-33 | 11 |
retina | 2.08e-27 | 6 |
photoreceptor array | 2.08e-27 | 6 |
posterior segment of eyeball | 2.08e-27 | 6 |
camera-type eye | 1.34e-18 | 20 |
simple eye | 1.34e-18 | 20 |
immature eye | 1.34e-18 | 20 |
ocular region | 1.34e-18 | 20 |
eyeball of camera-type eye | 1.34e-18 | 20 |
optic cup | 1.34e-18 | 20 |
optic vesicle | 1.34e-18 | 20 |
eye primordium | 1.34e-18 | 20 |
eye | 9.30e-18 | 21 |
visual system | 9.30e-18 | 21 |
face | 5.41e-17 | 22 |
sense organ | 1.19e-15 | 24 |
sensory system | 1.19e-15 | 24 |
entire sense organ system | 1.19e-15 | 24 |
ectodermal placode | 2.58e-12 | 31 |
cuboidal epithelium | 3.79e-11 | 4 |
transparent eye structure | 3.79e-11 | 4 |
simple cuboidal epithelium | 3.79e-11 | 4 |
cranial placode | 3.79e-11 | 4 |
lens of camera-type eye | 3.79e-11 | 4 |
epithelium of lens | 3.79e-11 | 4 |
lens placode | 3.79e-11 | 4 |
lens vesicle | 3.79e-11 | 4 |
pre-chordal neural plate | 6.84e-11 | 61 |
neural plate | 2.69e-08 | 82 |
presumptive neural plate | 2.69e-08 | 82 |
subdivision of head | 4.43e-08 | 49 |
neurectoderm | 6.09e-08 | 86 |
head | 3.68e-07 | 56 |