FFCP PHASE1:Hg19::chr19:15939820..15939835,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=652995 | |EntrezGene=652995 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=37126 | |HGNC=37126 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=63bp_to_ENST00000397381,NR_015379,uc002nbr.3_5end | |association_with_transcript=63bp_to_ENST00000397381,NR_015379,uc002nbr.3_5end | ||
|cluster_id=chr19:15939820..15939835,+ | |||
|coexpression_cluster_id=C3759 | |coexpression_cluster_id=C3759 | ||
|description=CAGE_peak_4_at_UCA1_5end | |description=CAGE_peak_4_at_UCA1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!1.61e-10!254;CL:0002150!8.72e-10!3;CL:0000861!8.72e-10!3;CL:0002541!1.95e-09!3;CL:0002076!5.00e-08!43;CL:1000415!4.93e-07!2 | |ontology_enrichment_celltype=CL:0000066!1.61e-10!254;CL:0002150!8.72e-10!3;CL:0000861!8.72e-10!3;CL:0002541!1.95e-09!3;CL:0002076!5.00e-08!43;CL:1000415!4.93e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002541;1.67e-16;3!CL:1001319;2.18e-13;1!CL:1000600;2.18e-13;1!CL:0002535;2.22e-07;2 | |ontology_enrichment_celltype_v019=CL:0002541;1.67e-16;3!CL:1001319;2.18e-13;1!CL:1000600;2.18e-13;1!CL:0002535;2.22e-07;2 | ||
|ontology_enrichment_celltype_v019_2=CL:0002541,2.38e-16,3;CL:1001319,2.06e-13,1;CL:1000600,2.06e-13,1;CL:0002535,2.15e-07,2 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:1749!5.96e-19!14;DOID:305!3.58e-18!106;DOID:0050687!1.66e-15!143;DOID:162!1.91e-11!235;DOID:14566!5.45e-11!239 | |ontology_enrichment_disease=DOID:1749!5.96e-19!14;DOID:305!3.58e-18!106;DOID:0050687!1.66e-15!143;DOID:162!1.91e-11!235;DOID:14566!5.45e-11!239 | ||
|ontology_enrichment_disease_v019=DOID:1749;9.27e-14;14!DOID:3111;1.71e-13;1!DOID:3603;1.71e-13;1!DOID:4929;2.50e-07;2!DOID:4468;3.18e-07;2 | |ontology_enrichment_disease_v019=DOID:1749;9.27e-14;14!DOID:3111;1.71e-13;1!DOID:3603;1.71e-13;1!DOID:4929;2.50e-07;2!DOID:4468;3.18e-07;2 | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.87e-14,106;DOID:1749,7.99e-14,14;DOID:3111,1.82e-13,1;DOID:3603,1.82e-13,1;DOID:0050687,2.72e-10,143;DOID:4929,2.58e-07,2;DOID:4468,2.74e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002294!1.51e-10!7;UBERON:0001173!1.51e-10!7;UBERON:0004912!1.51e-10!7;UBERON:0000476!1.95e-09!3;UBERON:0000920!1.95e-09!3;UBERON:0000344!2.15e-08!12;UBERON:0005156!3.33e-08!59;UBERON:0000990!3.33e-08!59;UBERON:0003133!3.91e-08!48;UBERON:0002394!2.86e-07!4;UBERON:0003928!2.86e-07!4;UBERON:0003100!2.87e-07!41;UBERON:0003134!5.50e-07!37;UBERON:0000474!5.50e-07!37;UBERON:0005795!6.57e-07!22;UBERON:0003343!6.71e-07!4;UBERON:0004785!6.71e-07!4;UBERON:0003124!8.00e-07!7 | |ontology_enrichment_uberon=UBERON:0002294!1.51e-10!7;UBERON:0001173!1.51e-10!7;UBERON:0004912!1.51e-10!7;UBERON:0000476!1.95e-09!3;UBERON:0000920!1.95e-09!3;UBERON:0000344!2.15e-08!12;UBERON:0005156!3.33e-08!59;UBERON:0000990!3.33e-08!59;UBERON:0003133!3.91e-08!48;UBERON:0002394!2.86e-07!4;UBERON:0003928!2.86e-07!4;UBERON:0003100!2.87e-07!41;UBERON:0003134!5.50e-07!37;UBERON:0000474!5.50e-07!37;UBERON:0005795!6.57e-07!22;UBERON:0003343!6.71e-07!4;UBERON:0004785!6.71e-07!4;UBERON:0003124!8.00e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0003124;1.67e-16;3!UBERON:0000920;1.67e-16;3!UBERON:0004645;2.18e-13;1!UBERON:0004913;2.18e-13;1!UBERON:0003703;2.18e-13;1!UBERON:0001256;2.18e-13;1!UBERON:0001259;2.18e-13;1!UBERON:0001174;2.18e-13;1!UBERON:0004914;2.18e-13;1!UBERON:0002394;6.84e-13;4!UBERON:0003928;6.84e-13;4!UBERON:0000344;9.65e-10;20!UBERON:0002294;9.56e-08;7!UBERON:0001173;9.56e-08;7!UBERON:0006955;2.22e-07;2!UBERON:0004801;2.22e-07;2!UBERON:0001255;2.50e-07;2!UBERON:0001556;2.50e-07;2!UBERON:0006562;4.69e-07;2!UBERON:0003350;8.48e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0003124;1.67e-16;3!UBERON:0000920;1.67e-16;3!UBERON:0004645;2.18e-13;1!UBERON:0004913;2.18e-13;1!UBERON:0003703;2.18e-13;1!UBERON:0001256;2.18e-13;1!UBERON:0001259;2.18e-13;1!UBERON:0001174;2.18e-13;1!UBERON:0004914;2.18e-13;1!UBERON:0002394;6.84e-13;4!UBERON:0003928;6.84e-13;4!UBERON:0000344;9.65e-10;20!UBERON:0002294;9.56e-08;7!UBERON:0001173;9.56e-08;7!UBERON:0006955;2.22e-07;2!UBERON:0004801;2.22e-07;2!UBERON:0001255;2.50e-07;2!UBERON:0001556;2.50e-07;2!UBERON:0006562;4.69e-07;2!UBERON:0003350;8.48e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,2.38e-16,3;UBERON:0004645,2.06e-13,1;UBERON:0001256,2.06e-13,1;UBERON:0001259,2.06e-13,1;UBERON:0004913,2.32e-13,1;UBERON:0003703,2.32e-13,1;UBERON:0001174,2.32e-13,1;UBERON:0004914,2.32e-13,1;UBERON:0000344,9.32e-10,20;UBERON:0002394,7.05e-09,6;UBERON:0003928,7.05e-09,6;UBERON:0003124,1.57e-07,7;UBERON:0006955,2.15e-07,2;UBERON:0004801,2.15e-07,2;UBERON:0001255,2.43e-07,2;UBERON:0001556,2.43e-07,2;UBERON:0003350,8.12e-07,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0.924184045252977,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06824071127473,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24670877868317,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0.0769502585037971,0,0.23056390438806,0.0897576444097721,0.651884231532048,2.23300811812344,0.183195186803725,1.06606955203727,0,0,0,0.225595660617181,0,0,0,0,0,2.77495773870551,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.979923974143776,4.52707874218093,0,0,0.677294319023596,2.0465008784132,1.06750094169172,0,0,0,0,0.19871461170299,0,0.977756913674015,0.961905843018405,0,0,0,0,0,0,0,0.942776138467182,0,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0.566560457600628,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680117776536817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22624246717254,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,0.353909170043221,0,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0,3.69640215542613,0,0,0,0,0,0,0,0,1.40538670403555,0,0,0,0,0.620916591138472,0,0,0,0,0,0,0.235479278551542,0,1.12108865325516,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0.31020638566432,0,0.782988022584546,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,3.98876016193775,0,0,0,0,0,0.406896178315738,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22988438543114,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0.179117045405697,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0,0,0,0,0,0,0.924184045252977,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.06824071127473,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.71623345421307,0,0,0,0,0,0,0,0,0,0,0,0,0,2.24670877868317,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.1137934482855,0,0,0,0,0,0,0,0,0,0,0,0,0.41827123283581,0.0769502585037971,0,0.23056390438806,0.0897576444097721,0.651884231532048,2.23300811812344,0.183195186803725,1.06606955203727,0,0,0,0.225595660617181,0,0,0,0,0,2.77495773870551,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0.979923974143776,4.52707874218093,0,0,0.677294319023596,2.0465008784132,1.06750094169172,0,0,0,0,0.19871461170299,0,0.977756913674015,0.961905843018405,0,0,0,0,0,0,0,0.942776138467182,0,0.209205692624666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169346664131569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.767660789277781,0,0,0,0,0,0,0,0,0,0.566560457600628,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.680117776536817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.22624246717254,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,0.353909170043221,0,0.115525666150338,0,0,0,0.0752103283492573,0,0,0,0,3.69640215542613,0,0,0,0,0,0,0,0,1.40538670403555,0,0,0,0,0.620916591138472,0,0,0,0,0,0,0.235479278551542,0,1.12108865325516,0,0.647782773655864,0,0,0,0,0,0,0,0,0,0,0,0,0,0.68732060563215,0.31020638566432,0,0.782988022584546,0.196300467230486,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203977659483963,0,0,0,0.151557396436479,0.267964130156178,0,0,0,0,0,0,0,0,0,0.217716747896961,0,0,0.0717222053926763,0,3.98876016193775,0,0,0,0,0,0.406896178315738,0,0,0 | ||
|short_description=p4@UCA1 | |short_description=p4@UCA1 | ||
}} | }} |
Latest revision as of 08:32, 16 September 2015
Short description: | p4@UCA1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_UCA1_5end |
Coexpression cluster: | C3759_papillotubular_clear_epidermoid_acantholytic_transitionalcell_rectal_mucinous |
Association with transcript: | 63bp_to_ENST00000397381, NR_015379, uc002nbr.3_5end |
EntrezGene: | UCA1 |
HGNC: | 37126 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 2.38e-16 | 3 |
bladder cell | 2.06e-13 | 1 |
lower urinary tract cell | 2.06e-13 | 1 |
epithelial cell of cervix | 2.15e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 2.38e-16 | 3 |
urinary bladder urothelium | 2.06e-13 | 1 |
wall of urinary bladder | 2.06e-13 | 1 |
mucosa of urinary bladder | 2.06e-13 | 1 |
hepatopancreatic ampulla | 2.32e-13 | 1 |
extrahepatic bile duct | 2.32e-13 | 1 |
common bile duct | 2.32e-13 | 1 |
duodenal papilla | 2.32e-13 | 1 |
mucosa | 9.32e-10 | 20 |
bile duct | 7.05e-09 | 6 |
digestive system duct | 7.05e-09 | 6 |
chorion | 1.57e-07 | 7 |
uterine epithelium | 2.15e-07 | 2 |
cervix epithelium | 2.15e-07 | 2 |
urinary bladder | 2.43e-07 | 2 |
lower urinary tract | 2.43e-07 | 2 |
epithelium of mucosa | 8.12e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.87e-14 | 106 |
squamous cell carcinoma | 7.99e-14 | 14 |
cystadenocarcinoma | 1.82e-13 | 1 |
mucinous cystadenocarcinoma | 1.82e-13 | 1 |
cell type cancer | 2.72e-10 | 143 |
tubular adenocarcinoma | 2.58e-07 | 2 |
clear cell adenocarcinoma | 2.74e-07 | 2 |