FFCP PHASE1:Hg19::chr3:58612849..58612850,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11170 | |EntrezGene=11170 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30827 | |HGNC=30827 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=296bp_to_ENST00000497310_5end | |association_with_transcript=296bp_to_ENST00000497310_5end | ||
|cluster_id=chr3:58612849..58612850,- | |||
|coexpression_cluster_id=C41 | |coexpression_cluster_id=C41 | ||
|description=CAGE_peak_32_at_FAM107A_5end | |description=CAGE_peak_32_at_FAM107A_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0003056;2.39e-66;3 | |ontology_enrichment_development_v019=UBERON:0003056;2.39e-66;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!8.65e-26!34;UBERON:0003528!8.65e-26!34;UBERON:0003056!1.29e-25!61;UBERON:0001869!1.08e-21!32;UBERON:0002780!2.19e-21!41;UBERON:0001890!2.19e-21!41;UBERON:0006240!2.19e-21!41;UBERON:0002791!4.94e-21!33;UBERON:0003075!4.98e-21!86;UBERON:0007284!4.98e-21!86;UBERON:0003080!7.26e-21!42;UBERON:0005743!1.07e-20!86;UBERON:0001893!2.07e-20!34;UBERON:0002346!4.95e-20!90;UBERON:0000033!3.49e-19!123;UBERON:0001049!8.43e-19!57;UBERON:0005068!8.43e-19!57;UBERON:0006241!8.43e-19!57;UBERON:0007135!8.43e-19!57;UBERON:0000073!1.27e-18!94;UBERON:0001016!1.27e-18!94;UBERON:0000955!2.37e-18!69;UBERON:0006238!2.37e-18!69;UBERON:0000153!3.21e-18!129;UBERON:0007811!3.21e-18!129;UBERON:0002616!3.91e-18!59;UBERON:0002619!6.79e-18!22;UBERON:0005383!1.88e-16!3;UBERON:0005382!1.88e-16!3;UBERON:0000956!8.49e-16!25;UBERON:0000203!8.49e-16!25;UBERON:0007023!1.88e-15!115;UBERON:0001017!2.70e-15!82;UBERON:0001950!7.73e-14!20;UBERON:0004121!2.03e-13!169;UBERON:0001736!2.06e-13!1;UBERON:0006298!2.06e-13!1;UBERON:0001874!4.23e-13!1;UBERON:0000924!4.55e-13!173;UBERON:0006601!4.55e-13!173;UBERON:0002902!4.77e-13!1;UBERON:0009899!4.77e-13!1;UBERON:0000369!1.39e-12!4;UBERON:0002435!1.39e-12!4;UBERON:0000204!1.39e-12!4;UBERON:0010082!1.39e-12!4;UBERON:0002420!2.41e-12!9;UBERON:0007245!2.41e-12!9;UBERON:0010009!2.41e-12!9;UBERON:0010011!2.41e-12!9;UBERON:0000454!2.41e-12!9;UBERON:0002308!3.28e-12!9;UBERON:0000125!3.28e-12!9;UBERON:0000966!1.33e-10!5;UBERON:0005388!1.33e-10!5;UBERON:0001802!1.33e-10!5;UBERON:0000349!2.04e-10!5;UBERON:0002021!2.35e-10!5;UBERON:0000970!7.24e-10!20;UBERON:0002104!2.09e-09!21;UBERON:0000020!1.33e-08!23;UBERON:0001032!2.98e-08!24;UBERON:0004456!2.98e-08!24;UBERON:0009663!1.43e-07!7;UBERON:0001829!2.43e-07!2;UBERON:0001876!2.58e-07!2;UBERON:0001897!3.09e-07!2;UBERON:0000064!3.25e-07!219;UBERON:0001954!3.93e-07!2;UBERON:0003022!3.93e-07!2;UBERON:0002421!3.93e-07!2;UBERON:0002600!3.93e-07!2;UBERON:0002148!4.17e-07!2;UBERON:0009662!4.17e-07!2;UBERON:0001873!4.69e-07!2;UBERON:0010122!4.69e-07!2;UBERON:0001870!5.60e-07!2;UBERON:0001871!8.35e-07!7 | |ontology_enrichment_uberon=UBERON:0002020!8.65e-26!34;UBERON:0003528!8.65e-26!34;UBERON:0003056!1.29e-25!61;UBERON:0001869!1.08e-21!32;UBERON:0002780!2.19e-21!41;UBERON:0001890!2.19e-21!41;UBERON:0006240!2.19e-21!41;UBERON:0002791!4.94e-21!33;UBERON:0003075!4.98e-21!86;UBERON:0007284!4.98e-21!86;UBERON:0003080!7.26e-21!42;UBERON:0005743!1.07e-20!86;UBERON:0001893!2.07e-20!34;UBERON:0002346!4.95e-20!90;UBERON:0000033!3.49e-19!123;UBERON:0001049!8.43e-19!57;UBERON:0005068!8.43e-19!57;UBERON:0006241!8.43e-19!57;UBERON:0007135!8.43e-19!57;UBERON:0000073!1.27e-18!94;UBERON:0001016!1.27e-18!94;UBERON:0000955!2.37e-18!69;UBERON:0006238!2.37e-18!69;UBERON:0000153!3.21e-18!129;UBERON:0007811!3.21e-18!129;UBERON:0002616!3.91e-18!59;UBERON:0002619!6.79e-18!22;UBERON:0005383!1.88e-16!3;UBERON:0005382!1.88e-16!3;UBERON:0000956!8.49e-16!25;UBERON:0000203!8.49e-16!25;UBERON:0007023!1.88e-15!115;UBERON:0001017!2.70e-15!82;UBERON:0001950!7.73e-14!20;UBERON:0004121!2.03e-13!169;UBERON:0001736!2.06e-13!1;UBERON:0006298!2.06e-13!1;UBERON:0001874!4.23e-13!1;UBERON:0000924!4.55e-13!173;UBERON:0006601!4.55e-13!173;UBERON:0002902!4.77e-13!1;UBERON:0009899!4.77e-13!1;UBERON:0000369!1.39e-12!4;UBERON:0002435!1.39e-12!4;UBERON:0000204!1.39e-12!4;UBERON:0010082!1.39e-12!4;UBERON:0002420!2.41e-12!9;UBERON:0007245!2.41e-12!9;UBERON:0010009!2.41e-12!9;UBERON:0010011!2.41e-12!9;UBERON:0000454!2.41e-12!9;UBERON:0002308!3.28e-12!9;UBERON:0000125!3.28e-12!9;UBERON:0000966!1.33e-10!5;UBERON:0005388!1.33e-10!5;UBERON:0001802!1.33e-10!5;UBERON:0000349!2.04e-10!5;UBERON:0002021!2.35e-10!5;UBERON:0000970!7.24e-10!20;UBERON:0002104!2.09e-09!21;UBERON:0000020!1.33e-08!23;UBERON:0001032!2.98e-08!24;UBERON:0004456!2.98e-08!24;UBERON:0009663!1.43e-07!7;UBERON:0001829!2.43e-07!2;UBERON:0001876!2.58e-07!2;UBERON:0001897!3.09e-07!2;UBERON:0000064!3.25e-07!219;UBERON:0001954!3.93e-07!2;UBERON:0003022!3.93e-07!2;UBERON:0002421!3.93e-07!2;UBERON:0002600!3.93e-07!2;UBERON:0002148!4.17e-07!2;UBERON:0009662!4.17e-07!2;UBERON:0001873!4.69e-07!2;UBERON:0010122!4.69e-07!2;UBERON:0001870!5.60e-07!2;UBERON:0001871!8.35e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.48e-40;5!UBERON:0005388;1.48e-40;5!UBERON:0001802;1.48e-40;5!UBERON:0000019;6.95e-12;19!UBERON:0000047;6.95e-12;19!UBERON:0004088;6.95e-12;19!UBERON:0010230;6.95e-12;19!UBERON:0000970;2.29e-11;20!UBERON:0002104;6.74e-11;21!UBERON:0001456;6.74e-11;21!UBERON:0000020;4.42e-10;23!UBERON:0001032;1.01e-09;24!UBERON:0004456;1.01e-09;24 | |ontology_enrichment_uberon_v019=UBERON:0000966;1.48e-40;5!UBERON:0005388;1.48e-40;5!UBERON:0001802;1.48e-40;5!UBERON:0000019;6.95e-12;19!UBERON:0000047;6.95e-12;19!UBERON:0004088;6.95e-12;19!UBERON:0010230;6.95e-12;19!UBERON:0000970;2.29e-11;20!UBERON:0002104;6.74e-11;21!UBERON:0001456;6.74e-11;21!UBERON:0000020;4.42e-10;23!UBERON:0001032;1.01e-09;24!UBERON:0004456;1.01e-09;24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000966,4.27e-34,6;UBERON:0005388,4.27e-34,6;UBERON:0001802,4.27e-34,6;UBERON:0000019,2.29e-11,20;UBERON:0000047,2.29e-11,20;UBERON:0010312,2.29e-11,20;UBERON:0004088,2.29e-11,20;UBERON:0010230,2.29e-11,20;UBERON:0003072,2.29e-11,20;UBERON:0004128,2.29e-11,20;UBERON:0003071,2.29e-11,20;UBERON:0000970,6.74e-11,21;UBERON:0002104,6.74e-11,21;UBERON:0001456,1.80e-10,22;UBERON:0000020,1.01e-09,24;UBERON:0001032,1.01e-09,24;UBERON:0004456,1.01e-09,24;UBERON:0005085,7.41e-08,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90392296312213,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,1.42953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.90392296312213,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.1251909307065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,1.42953088353313,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20686599172379,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p32@FAM107A | |short_description=p32@FAM107A | ||
}} | }} |
Latest revision as of 06:28, 19 September 2015
Short description: | p32@FAM107A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_32_at_FAM107A_5end |
Coexpression cluster: | C41_retina_eye_medulla_Retinal_medulloblastoma_kidney_pineal |
Association with transcript: | 296bp_to_ENST00000497310_5end |
EntrezGene: | FAM107A |
HGNC: | 30827 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retina | 4.27e-34 | 6 |
photoreceptor array | 4.27e-34 | 6 |
posterior segment of eyeball | 4.27e-34 | 6 |
camera-type eye | 2.29e-11 | 20 |
simple eye | 2.29e-11 | 20 |
immature eye | 2.29e-11 | 20 |
ocular region | 2.29e-11 | 20 |
eyeball of camera-type eye | 2.29e-11 | 20 |
optic cup | 2.29e-11 | 20 |
optic vesicle | 2.29e-11 | 20 |
eye primordium | 2.29e-11 | 20 |
eye | 6.74e-11 | 21 |
visual system | 6.74e-11 | 21 |
face | 1.80e-10 | 22 |
sense organ | 1.01e-09 | 24 |
sensory system | 1.01e-09 | 24 |
entire sense organ system | 1.01e-09 | 24 |
ectodermal placode | 7.41e-08 | 31 |