FFCP PHASE1:Hg19::chr2:238382389..238382405,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:238382389..238382405,+ | |||
|coexpression_cluster_id=C1264 | |coexpression_cluster_id=C1264 | ||
|description=CAGE_peak_at_chr2:238382389..238382405,+ | |description=CAGE_peak_at_chr2:238382389..238382405,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000349!3.95e-08!3;CL:0002577!3.95e-08!3;CL:0002178!9.19e-08!3 | |ontology_enrichment_celltype=CL:0000349!3.95e-08!3;CL:0002577!3.95e-08!3;CL:0002178!9.19e-08!3 | ||
|ontology_enrichment_celltype_v019=CL:0002536;1.43e-10;2!CL:0000349;3.06e-09;19!CL:0002577;3.25e-07;3 | |ontology_enrichment_celltype_v019=CL:0002536;1.43e-10;2!CL:0000349;3.06e-09;19!CL:0002577;3.25e-07;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002536,1.43e-10,2;CL:0000349,2.98e-09,19;CL:0002577,3.16e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;5.13e-19;1 | |ontology_enrichment_development_v019=UBERON:0003124;5.13e-19;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:5093;3.92e-19;4!DOID:1612;3.92e-19;4 | |ontology_enrichment_disease_v019=DOID:5093;3.92e-19;4!DOID:1612;3.92e-19;4 | ||
|ontology_enrichment_disease_v019_2=DOID:5093,3.92e-19,4;DOID:1612,3.92e-19,4 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.15e-18!14;UBERON:0000158!2.15e-18!14;UBERON:0001987!7.79e-13!4;UBERON:0004340!7.79e-13!4;UBERON:0003124!1.61e-12!7;UBERON:0000341!1.80e-11!2;UBERON:0003127!3.06e-11!2;UBERON:0000478!2.43e-10!24;UBERON:0000305!7.89e-08!7;UBERON:0002171!4.58e-07!1;UBERON:0006518!4.58e-07!1;UBERON:0008949!4.58e-07!1;UBERON:0000101!4.58e-07!1;UBERON:0002167!4.58e-07!1;UBERON:0000915!5.49e-07!52;UBERON:0004871!6.74e-07!8;UBERON:0006122!8.49e-07!1 | |ontology_enrichment_uberon=UBERON:0005631!2.15e-18!14;UBERON:0000158!2.15e-18!14;UBERON:0001987!7.79e-13!4;UBERON:0004340!7.79e-13!4;UBERON:0003124!1.61e-12!7;UBERON:0000341!1.80e-11!2;UBERON:0003127!3.06e-11!2;UBERON:0000478!2.43e-10!24;UBERON:0000305!7.89e-08!7;UBERON:0002171!4.58e-07!1;UBERON:0006518!4.58e-07!1;UBERON:0008949!4.58e-07!1;UBERON:0000101!4.58e-07!1;UBERON:0002167!4.58e-07!1;UBERON:0000915!5.49e-07!52;UBERON:0004871!6.74e-07!8;UBERON:0006122!8.49e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002171;1.18e-19;1!UBERON:0006518;1.18e-19;1!UBERON:0008949;1.18e-19;1!UBERON:0000101;1.18e-19;1!UBERON:0002167;1.18e-19;1!UBERON:0001987;1.16e-18;4!UBERON:0000478;2.20e-12;24!UBERON:0000305;1.73e-11;7!UBERON:0005631;2.57e-08;10!UBERON:0000158;2.57e-08;10!UBERON:0000310;3.14e-08;10!UBERON:0002048;5.07e-08;22!UBERON:0000117;5.07e-08;22!UBERON:0000171;5.07e-08;22!UBERON:0000170;5.07e-08;22!UBERON:0000915;6.19e-08;52!UBERON:0001443;1.46e-07;11 | |ontology_enrichment_uberon_v019=UBERON:0002171;1.18e-19;1!UBERON:0006518;1.18e-19;1!UBERON:0008949;1.18e-19;1!UBERON:0000101;1.18e-19;1!UBERON:0002167;1.18e-19;1!UBERON:0001987;1.16e-18;4!UBERON:0000478;2.20e-12;24!UBERON:0000305;1.73e-11;7!UBERON:0005631;2.57e-08;10!UBERON:0000158;2.57e-08;10!UBERON:0000310;3.14e-08;10!UBERON:0002048;5.07e-08;22!UBERON:0000117;5.07e-08;22!UBERON:0000171;5.07e-08;22!UBERON:0000170;5.07e-08;22!UBERON:0000915;6.19e-08;52!UBERON:0001443;1.46e-07;11 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.97e-21,14;UBERON:0000158,5.97e-21,14;UBERON:0002171,1.30e-19,1;UBERON:0006518,1.30e-19,1;UBERON:0008949,1.30e-19,1;UBERON:0000101,1.30e-19,1;UBERON:0002167,1.30e-19,1;UBERON:0001987,1.16e-18,4;UBERON:0004340,1.16e-18,4;UBERON:0000478,2.17e-12,24;UBERON:0000305,1.68e-11,7;UBERON:0003124,4.27e-11,7;UBERON:0004871,3.52e-10,8;UBERON:0000915,8.69e-09,52;UBERON:0000310,3.14e-08,10;UBERON:0002048,5.14e-08,22;UBERON:0000117,5.14e-08,22;UBERON:0000171,5.14e-08,22;UBERON:0000170,5.14e-08,22;UBERON:0005597,5.14e-08,22;UBERON:0000118,5.14e-08,22;UBERON:0001443,1.46e-07,11 | |||
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|short_description=p@chr2:238382389..238382405,+ | |short_description=p@chr2:238382389..238382405,+ | ||
}} | }} |
Latest revision as of 08:12, 29 July 2015
Short description: | p@chr2:238382389..238382405, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:238382389..238382405, + |
Coexpression cluster: | C1264_Amniotic_Placental_chorionic_amniotic_Mesenchymal_lung_MCF7 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amniotic epithelial cell | 1.43e-10 | 2 |
extraembryonic cell | 2.98e-09 | 19 |
placental epithelial cell | 3.16e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.97e-21 | 14 |
membranous layer | 5.97e-21 | 14 |
lower lobe of right lung | 1.30e-19 | 1 |
right lung lobe | 1.30e-19 | 1 |
lower lobe of lung | 1.30e-19 | 1 |
lobe of lung | 1.30e-19 | 1 |
right lung | 1.30e-19 | 1 |
placenta | 1.16e-18 | 4 |
allantois | 1.16e-18 | 4 |
extraembryonic structure | 2.17e-12 | 24 |
amnion | 1.68e-11 | 7 |
chorion | 4.27e-11 | 7 |
somatic layer of lateral plate mesoderm | 3.52e-10 | 8 |
thoracic segment of trunk | 8.69e-09 | 52 |
breast | 3.14e-08 | 10 |
lung | 5.14e-08 | 22 |
respiratory tube | 5.14e-08 | 22 |
respiration organ | 5.14e-08 | 22 |
pair of lungs | 5.14e-08 | 22 |
lung primordium | 5.14e-08 | 22 |
lung bud | 5.14e-08 | 22 |
chest | 1.46e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.92e-19 | 4 |
breast cancer | 3.92e-19 | 4 |