FFCP PHASE1:Hg19::chr1:202163015..202163027,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=59352 | |EntrezGene=59352 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19719 | |HGNC=19719 | ||
|TSSclassifier=strong | |||
|UniProt=Q9HBX8 | |UniProt=Q9HBX8 | ||
|association_with_transcript=-1bp_to_ENST00000367278_5end | |association_with_transcript=-1bp_to_ENST00000367278_5end | ||
|cluster_id=chr1:202163015..202163027,+ | |||
|coexpression_cluster_id=C3921 | |coexpression_cluster_id=C3921 | ||
|description=CAGE_peak_8_at_LGR6_5end | |description=CAGE_peak_8_at_LGR6_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000623!2.09e-08!3;CL:0000825!2.09e-08!3;CL:0000625!8.44e-08!11 | |ontology_enrichment_celltype=CL:0000623!2.09e-08!3;CL:0000825!2.09e-08!3;CL:0000625!8.44e-08!11 | ||
|ontology_enrichment_celltype_v019=CL:0000039;5.37e-09;7!CL:0000586;5.37e-09;7 | |ontology_enrichment_celltype_v019=CL:0000039;5.37e-09;7!CL:0000586;5.37e-09;7 | ||
|ontology_enrichment_celltype_v019_2=CL:0000039,6.06e-09,7;CL:0000586,6.06e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0010227;8.63e-16;1!UBERON:0006242;8.63e-16;1!UBERON:0006298;2.06e-15;1!UBERON:0006965;1.20e-08;2 | |ontology_enrichment_development_v019=UBERON:0010227;8.63e-16;1!UBERON:0006242;8.63e-16;1!UBERON:0006298;2.06e-15;1!UBERON:0006965;1.20e-08;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4929;1.50e-08;2 | |ontology_enrichment_disease_v019=DOID:4929;1.50e-08;2 | ||
|ontology_enrichment_disease_v019_2=DOID:4929,1.61e-08,2 | |||
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|ontology_enrichment_uberon_v019=UBERON:0000988;1.05e-19;3!UBERON:0002079;8.63e-16;1!UBERON:0001736;2.06e-15;1!UBERON:0002146;2.06e-15;1!UBERON:0005623;2.06e-15;1!UBERON:0002298;2.40e-10;6!UBERON:0002081;1.50e-08;2!UBERON:0000007;2.31e-08;2!UBERON:0002148;2.31e-08;2!UBERON:0001829;2.31e-08;2!UBERON:0006331;2.31e-08;2!UBERON:0009662;2.31e-08;2!UBERON:0000473;5.56e-08;8!UBERON:0002680;3.44e-07;9!UBERON:0001895;3.44e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0000988;1.05e-19;3!UBERON:0002079;8.63e-16;1!UBERON:0001736;2.06e-15;1!UBERON:0002146;2.06e-15;1!UBERON:0005623;2.06e-15;1!UBERON:0002298;2.40e-10;6!UBERON:0002081;1.50e-08;2!UBERON:0000007;2.31e-08;2!UBERON:0002148;2.31e-08;2!UBERON:0001829;2.31e-08;2!UBERON:0006331;2.31e-08;2!UBERON:0009662;2.31e-08;2!UBERON:0000473;5.56e-08;8!UBERON:0002680;3.44e-07;9!UBERON:0001895;3.44e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000988,1.39e-19,3;UBERON:0002079,8.63e-16,1;UBERON:0002146,1.16e-15,1;UBERON:0005623,1.16e-15,1;UBERON:0001736,2.06e-15,1;UBERON:0006298,2.06e-15,1;UBERON:0002298,2.77e-10,6;UBERON:0007023,3.32e-09,114;UBERON:0003076,4.74e-09,15;UBERON:0003057,4.74e-09,15;UBERON:0002081,1.50e-08,2;UBERON:0010227,1.50e-08,2;UBERON:0002148,2.15e-08,2;UBERON:0006331,2.15e-08,2;UBERON:0009662,2.15e-08,2;UBERON:0001829,2.31e-08,2;UBERON:0000007,2.87e-08,2;UBERON:0000473,6.18e-08,8;UBERON:0002680,3.78e-07,9;UBERON:0001895,3.78e-07,9;UBERON:0010092,3.78e-07,9 | |||
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| ||
|short_description=p8@LGR6 | |short_description=p8@LGR6 | ||
}} | }} |
Latest revision as of 20:14, 19 September 2015
Short description: | p8@LGR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LGR6_5end |
Coexpression cluster: | C3921_aorta_gall_heart_skin_pituitary_lung_testicular |
Association with transcript: | -1bp_to_ENST00000367278_5end |
EntrezGene: | LGR6 |
HGNC: | 19719 |
UniProt: | Q9HBX8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 6.06e-09 | 7 |
germ cell | 6.06e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
pons | 1.39e-19 | 3 |
left cardiac atrium | 8.63e-16 | 1 |
pulmonary valve | 1.16e-15 | 1 |
semi-lunar valve | 1.16e-15 | 1 |
submandibular gland | 2.06e-15 | 1 |
submandibular gland primordium | 2.06e-15 | 1 |
brainstem | 2.77e-10 | 6 |
adult organism | 3.32e-09 | 114 |
posterior neural tube | 4.74e-09 | 15 |
chordal neural plate | 4.74e-09 | 15 |
cardiac atrium | 1.50e-08 | 2 |
future cardiac atrium | 1.50e-08 | 2 |
locus ceruleus | 2.15e-08 | 2 |
brainstem nucleus | 2.15e-08 | 2 |
hindbrain nucleus | 2.15e-08 | 2 |
major salivary gland | 2.31e-08 | 2 |
pituitary gland | 2.87e-08 | 2 |
testis | 6.18e-08 | 8 |
regional part of metencephalon | 3.78e-07 | 9 |
metencephalon | 3.78e-07 | 9 |
future metencephalon | 3.78e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
tubular adenocarcinoma | 1.61e-08 | 2 |