FFCP PHASE1:Hg19::chr1:95089255..95089279,-: Difference between revisions
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|id=chr1:95089255..95089279,-
|short_description=p1@ENST00000435559
|description=CAGE_peak_1_at_ENST00000435559_5end
|association_with_transcript=460bp_to_ENST00000...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=460bp_to_ENST00000435559_5end | |||
|cluster_id=chr1:95089255..95089279,- | |||
|coexpression_cluster_id=C1399 | |||
|description=CAGE_peak_1_at_ENST00000435559_5end | |||
|id=chr1:95089255..95089279,- | |||
|ontology_enrichment_celltype=CL:0002076!1.70e-34!43;CL:0002368!2.44e-32!13;CL:0000066!9.37e-27!254;CL:0000223!1.54e-23!59;CL:0002202!1.13e-19!9;CL:0002632!1.13e-19!9;CL:0002159!1.77e-15!13;CL:0002328!3.85e-12!3;CL:0000068!5.93e-12!3;CL:0000069!5.93e-12!3;CL:0000307!5.93e-12!3;CL:0000377!5.93e-12!3;CL:0002621!1.13e-11!3;CL:0000220!7.95e-11!246;CL:0002321!1.14e-10!248;CL:0002077!2.85e-08!33;CL:0000317!4.02e-08!2;CL:1000448!4.02e-08!2;CL:0002308!4.02e-08!2;CL:0002140!4.02e-08!2;CL:0000575!1.06e-07!2;CL:0000076!1.65e-07!62;CL:0002251!3.10e-07!21;CL:0000362!4.80e-07!8;CL:0000063!8.41e-07!578 | |||
|ontology_enrichment_celltype_v019=CL:0002368;1.01e-46;13!CL:0002328;1.84e-38;3!CL:0002202;4.16e-35;9!CL:0002632;4.16e-35;9!CL:0002076;2.32e-23;42!CL:0000307;5.74e-18;3!CL:0002621;2.03e-17;3!CL:0002252;6.65e-14;1!CL:0000317;1.99e-07;2!CL:1000448;1.99e-07;2!CL:0002308;1.99e-07;2!CL:0002140;1.99e-07;2!CL:0002535;1.99e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,1.01e-46,13;CL:0002328,1.62e-38,3;CL:0002202,3.75e-35,9;CL:0002632,3.75e-35,9;CL:0002076,1.51e-28,42;CL:0000223,2.26e-20,58;CL:0000068,5.50e-18,3;CL:0000069,5.50e-18,3;CL:0000307,5.50e-18,3;CL:0000377,5.50e-18,3;CL:0002621,2.71e-17,3;CL:0002252,6.65e-14,1;CL:0000066,8.01e-11,253;CL:0002535,1.75e-07,2;CL:0000317,2.25e-07,2;CL:1000448,2.25e-07,2;CL:0002308,2.25e-07,2;CL:0002140,2.25e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000377;5.74e-18;3!CL:0000223;2.31e-12;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007196!3.11e-12!14;UBERON:0001558!3.11e-12!14;UBERON:0004815!3.85e-12!3;UBERON:0002031!3.85e-12!3;UBERON:0004119!9.80e-12!169;UBERON:0000925!9.80e-12!169;UBERON:0006595!9.80e-12!169;UBERON:0001949!1.13e-11!3;UBERON:0001004!1.48e-11!72;UBERON:0000065!5.80e-10!53;UBERON:0005910!2.52e-09!6;UBERON:0002185!3.40e-09!4;UBERON:0005911!4.00e-09!82;UBERON:0004807!1.01e-08!28;UBERON:0005178!1.15e-08!34;UBERON:0002224!1.15e-08!34;UBERON:0005181!2.32e-08!35;UBERON:0002419!4.02e-08!2;UBERON:0007771!4.02e-08!2;UBERON:0003297!4.02e-08!2;UBERON:0001821!4.02e-08!2;UBERON:0003487!4.02e-08!2;UBERON:0001820!4.02e-08!2;UBERON:0005089!4.02e-08!2;UBERON:0005088!4.02e-08!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.84e-38;3!UBERON:0002031;1.84e-38;3!UBERON:0002185;2.21e-23;5!UBERON:0007196;4.22e-21;15!UBERON:0001558;4.22e-21;15!UBERON:0001949;2.03e-17;3!UBERON:0000485;6.76e-17;7!UBERON:0004807;3.30e-14;22!UBERON:0005178;3.18e-13;34!UBERON:0002224;3.18e-13;34!UBERON:0005181;8.04e-12;35!UBERON:0000065;1.36e-11;44!UBERON:0005911;5.75e-11;36!UBERON:0000486;7.89e-10;12!UBERON:0000072;3.05e-08;37!UBERON:0003126;3.15e-08;7!UBERON:0001005;3.15e-08;7!UBERON:0003929;5.37e-08;7!UBERON:0002419;1.99e-07;2!UBERON:0007771;1.99e-07;2!UBERON:0003297;1.99e-07;2!UBERON:0001821;1.99e-07;2!UBERON:0006955;1.99e-07;2!UBERON:0003487;1.99e-07;2!UBERON:0004801;1.99e-07;2!UBERON:0001820;1.99e-07;2!UBERON:0003350;4.21e-07;8!UBERON:0001828;4.21e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.62e-38,3;UBERON:0002031,1.62e-38,3;UBERON:0002185,2.05e-23,5;UBERON:0007196,3.96e-21,15;UBERON:0001558,3.96e-21,15;UBERON:0001949,2.71e-17,3;UBERON:0000485,2.68e-13,9;UBERON:0005178,4.16e-13,34;UBERON:0002224,4.16e-13,34;UBERON:0005181,1.01e-12,35;UBERON:0001004,1.08e-12,74;UBERON:0004807,3.93e-11,28;UBERON:0000065,7.25e-11,54;UBERON:0000915,1.90e-08,52;UBERON:0008947,2.60e-08,38;UBERON:0003258,2.60e-08,38;UBERON:0003126,3.10e-08,7;UBERON:0001005,3.10e-08,7;UBERON:0004119,5.21e-08,160;UBERON:0000925,5.21e-08,160;UBERON:0006595,5.21e-08,160;UBERON:0006955,1.75e-07,2;UBERON:0004801,1.75e-07,2;UBERON:0002419,2.25e-07,2;UBERON:0007771,2.25e-07,2;UBERON:0003297,2.25e-07,2;UBERON:0001821,2.25e-07,2;UBERON:0003487,2.25e-07,2;UBERON:0001820,2.25e-07,2;UBERON:0005089,2.25e-07,2;UBERON:0005088,2.25e-07,2;UBERON:0003350,4.69e-07,8;UBERON:0001828,4.69e-07,8 | |||
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| ||
|short_description=p1@ENST00000435559 | |||
}} | }} |
Latest revision as of 11:33, 28 July 2015
Short description: | p1@ENST00000435559 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000435559_5end |
Coexpression cluster: | C1399_Bronchial_Tracheal_bronchial_Lymphatic_salivary_Small_lung |
Association with transcript: | 460bp_to_ENST00000435559_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 1.01e-46 | 13 |
bronchial epithelial cell | 1.62e-38 | 3 |
epithelial cell of tracheobronchial tree | 3.75e-35 | 9 |
epithelial cell of lower respiratory tract | 3.75e-35 | 9 |
endo-epithelial cell | 1.51e-28 | 42 |
endodermal cell | 2.26e-20 | 58 |
duct epithelial cell | 5.50e-18 | 3 |
branched duct epithelial cell | 5.50e-18 | 3 |
tracheal epithelial cell | 5.50e-18 | 3 |
tracheoblast | 5.50e-18 | 3 |
gingival epithelial cell | 2.71e-17 | 3 |
epithelial cell of esophagus | 6.65e-14 | 1 |
epithelial cell | 8.01e-11 | 253 |
epithelial cell of cervix | 1.75e-07 | 2 |
sebum secreting cell | 2.25e-07 | 2 |
epithelial cell of sweat gland | 2.25e-07 | 2 |
epithelial cell of skin gland | 2.25e-07 | 2 |
acinar cell of sebaceous gland | 2.25e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.62e-38 | 3 |
epithelium of bronchus | 1.62e-38 | 3 |
bronchus | 2.05e-23 | 5 |
tracheobronchial tree | 3.96e-21 | 15 |
lower respiratory tract | 3.96e-21 | 15 |
gingival epithelium | 2.71e-17 | 3 |
simple columnar epithelium | 2.68e-13 | 9 |
thoracic cavity element | 4.16e-13 | 34 |
thoracic cavity | 4.16e-13 | 34 |
thoracic segment organ | 1.01e-12 | 35 |
respiratory system | 1.08e-12 | 74 |
respiratory system epithelium | 3.93e-11 | 28 |
respiratory tract | 7.25e-11 | 54 |
thoracic segment of trunk | 1.90e-08 | 52 |
respiratory primordium | 2.60e-08 | 38 |
endoderm of foregut | 2.60e-08 | 38 |
trachea | 3.10e-08 | 7 |
respiratory airway | 3.10e-08 | 7 |
endoderm-derived structure | 5.21e-08 | 160 |
endoderm | 5.21e-08 | 160 |
presumptive endoderm | 5.21e-08 | 160 |
uterine epithelium | 1.75e-07 | 2 |
cervix epithelium | 1.75e-07 | 2 |
skin gland | 2.25e-07 | 2 |
epidermis gland | 2.25e-07 | 2 |
gland of integumental system | 2.25e-07 | 2 |
sebaceous gland | 2.25e-07 | 2 |
skin sebaceous gland | 2.25e-07 | 2 |
sweat gland | 2.25e-07 | 2 |
sweat gland placode | 2.25e-07 | 2 |
sebaceous gland placode | 2.25e-07 | 2 |
epithelium of mucosa | 4.69e-07 | 8 |
gingiva | 4.69e-07 | 8 |