FFCP PHASE1:Hg19::chr1:36590788..36590803,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1296 | |EntrezGene=1296 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2216 | |HGNC=2216 | ||
|TSSclassifier=strong | |||
|UniProt=P25067 | |UniProt=P25067 | ||
|association_with_transcript=17bp_to_ENST00000397799_5end | |association_with_transcript=17bp_to_ENST00000397799_5end | ||
|cluster_id=chr1:36590788..36590803,- | |||
|coexpression_cluster_id=C3977 | |coexpression_cluster_id=C3977 | ||
|description=CAGE_peak_2_at_COL8A2_5end | |description=CAGE_peak_2_at_COL8A2_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000153;9.35e-10;9!CL:0000447;9.35e-10;9!CL:0000138;6.56e-08;6!CL:0000327;5.90e-07;15 | |ontology_enrichment_celltype_v019=CL:0000153;9.35e-10;9!CL:0000447;9.35e-10;9!CL:0000138;6.56e-08;6!CL:0000327;5.90e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000153,7.92e-10,9;CL:0000447,7.92e-10,9;CL:0000058,5.71e-08,6;CL:0000138,5.71e-08,6;CL:0000327,5.25e-07,15 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.54e-12!115;UBERON:0003075!1.78e-09!86;UBERON:0007284!1.78e-09!86;UBERON:0002346!1.92e-09!90;UBERON:0000468!1.55e-08!659;UBERON:0000153!1.75e-08!129;UBERON:0007811!1.75e-08!129;UBERON:0003076!3.62e-08!15;UBERON:0003057!3.62e-08!15;UBERON:0000033!1.09e-07!123;UBERON:0004732!7.24e-07!13;UBERON:0007625!7.98e-07!11;UBERON:0000479!9.74e-07!787 | |ontology_enrichment_uberon=UBERON:0007023!1.54e-12!115;UBERON:0003075!1.78e-09!86;UBERON:0007284!1.78e-09!86;UBERON:0002346!1.92e-09!90;UBERON:0000468!1.55e-08!659;UBERON:0000153!1.75e-08!129;UBERON:0007811!1.75e-08!129;UBERON:0003076!3.62e-08!15;UBERON:0003057!3.62e-08!15;UBERON:0000033!1.09e-07!123;UBERON:0004732!7.24e-07!13;UBERON:0007625!7.98e-07!11;UBERON:0000479!9.74e-07!787 | ||
|ontology_enrichment_uberon_v019=UBERON:0002104;2.22e-09;21!UBERON:0001032;3.05e-09;24!UBERON:0004456;3.05e-09;24!UBERON:0007625;1.88e-08;11!UBERON:0001708;2.28e-08;4!UBERON:0008895;2.28e-08;4!UBERON:0000970;3.31e-08;20!UBERON:0000020;3.96e-08;23!UBERON:0001456;1.30e-07;21!UBERON:0000019;5.67e-07;19!UBERON:0000047;5.67e-07;19!UBERON:0004088;5.67e-07;19!UBERON:0010230;5.67e-07;19 | |ontology_enrichment_uberon_v019=UBERON:0002104;2.22e-09;21!UBERON:0001032;3.05e-09;24!UBERON:0004456;3.05e-09;24!UBERON:0007625;1.88e-08;11!UBERON:0001708;2.28e-08;4!UBERON:0008895;2.28e-08;4!UBERON:0000970;3.31e-08;20!UBERON:0000020;3.96e-08;23!UBERON:0001456;1.30e-07;21!UBERON:0000019;5.67e-07;19!UBERON:0000047;5.67e-07;19!UBERON:0004088;5.67e-07;19!UBERON:0010230;5.67e-07;19 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000970,1.72e-09,21;UBERON:0002104,1.72e-09,21;UBERON:0000020,2.41e-09,24;UBERON:0001032,2.41e-09,24;UBERON:0004456,2.41e-09,24;UBERON:0001456,7.72e-09,22;UBERON:0007625,1.67e-08,11;UBERON:0001708,2.26e-08,4;UBERON:0008895,2.26e-08,4;UBERON:0000019,3.39e-08,20;UBERON:0000047,3.39e-08,20;UBERON:0010312,3.39e-08,20;UBERON:0004088,3.39e-08,20;UBERON:0010230,3.39e-08,20;UBERON:0003072,3.39e-08,20;UBERON:0004128,3.39e-08,20;UBERON:0003071,3.39e-08,20;UBERON:0003076,3.91e-08,15;UBERON:0003057,3.91e-08,15;UBERON:0000153,6.04e-07,62;UBERON:0007811,6.04e-07,62 | |||
|phase1_expression=0.54503513781167,0.856402095563933,0.422863212287913,6.00439790118782,0,0,2.53299878168311,0,0,0,0,0,0,0,0,0,0,0,0,0.61560529038394,3.67201244239655,10.3440058087769,0,0,0,0,0,0,0,0,0.154816123316076,0.919421224478927,0,0,0,0,0.587200878669695,0.553995408531877,0.401088894940283,0,0.447830948479849,0,0.515151135268373,0.436194716338694,0.377875943688809,0,0,0.822335776043652,0.619412741790207,0,0,0,0,0,0,0.188242339542605,0,0.224723484445085,0,0,1.91801137739712,0.329851300186716,0.199463657621632,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0.425208599930087,0.419317291016752,0.44931452458598,0.300353785683013,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0.560508562981536,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0,1.80719576192283,2.00535164254356,3.47631645505977,10.3387173116643,39.4174244945135,1.03988298880475,1.99556457716308,1.31752178539689,0.196468613246569,0,0,0.649094787309367,0,1.19662164466979,2.38490624305342,0.571994910780128,1.48583000531826,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0.0892997282840798,0.673588117878509,0.337834441449967,0,0,0,0,0,0,5.4666914686485,0.12663051166458,0,0.860509862246441,0.354668382198357,0.560677600142307,0,0,0,0.134710672069688,0,0.756787138224657,0.576175924479999,0.234321431833797,0.312160076830321,0,0,0,0,0,0,0,0.103325781175765,1.18800285728205,1.48360157567134,0,0,0,0,0,0.438977620880838,0,0.45071417671979,0,0.89694817844431,2.98980344345994,0.635795703478686,1.50045548042201,0.721367704669072,1.28820270022815,2.41951913231067,1.85653965465393,0.584622030967192,0.757301322732344,1.28869858099219,1.13152239773168,1.42003837006646,0.705264687593482,0,0,2.45471508531751,0,0,0.132529768321485,0,0.207322110030741,0,0,1.56449532329816,23.1566737749439,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,4.41026134156626,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0,0.370353780634118,0.977424915930974,0,1.44331342025273,0.115930404975077,2.81780866165972,0.433099343283221,0,0.190254152234598,0,0,0.738651018262192,16.6143028248859,12.6336487945419,12.185398418281,4.36753533317035,3.54437743105966,0,0,0,0,0,0.414656231081544,0,0.12624243342638,0,0,0,0,0,0,0,0,0.87192013766656,0.07333828582095,5.17086863031111,0,0,0,0,0,0,0,0,9.76718889704597,2.46972101034231,0,0,0.791951872933429,0,0,0,2.43247561282381,0.502257091432126,6.32501818449095,0.239624855491583,0,0,0,0,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.535286966391485,0.315404830067869,2.10854546986884,9.02838299183157,90.9630016223939,5.17365356462525,0,1.65932251687533,0.955719759148911,0.195801157462741,0.686286847621712,0.206768026122887,0,0,0,0,0,1.24053903909388,5.21770709179412,1.12264037773229,0.640695746278505,7.16390148693385,0.482561763430822,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0.464841513839837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,0,0,15.8999077572161,0.656029291399411,1.62689197332152,0.206082023295445,0,0,0,0,0,0.48335359146061,0,0,0.137836572484531,0,0.145016693914229,0.0852266274161009,2.1367688555217,0.495854746082934,0.384380134730212,0.127612712494584,0.6069466851333,0,1.25924938732256,0,0,0,0,0,0,1.48863347743867,1.2655176988749,0.190630193923825,0,0,0,0,0.719489830333259,0,0,0,0,0,0.48763373908959,0,0,0,0.141405431953713,0,0.551365343546124,0,0,0,0.655894752046633,0,0,0,0.143411352204052,8.3511684861153,0,0,7.81098250601357,3.62224382255892,0,1.74967360122491,0.192444225451024,0,1.08890984861323,0.376575203107117,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0.425846237690326,0,2.15068535015921,0.671028323677248,1.16794399198336,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.562677665642051,0.111308705022906,0,1.26675244876796,5.18044769452781,3.03912307084262,0,0,0,0,0,0,0,0.986434056369336,2.3948309234694,0,0,0.185536196323703,0,0,0,0.724999575434793,0,0,0,0,0,0.173624994933292,0,0.482385754501632,1.52581736317083,0.663475559587348,2.36438095162838,0.87754158861589,0,0,1.53900517007594,0,0,0,0,0,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.943615861729479,7.2231988256891,1.63985112007737,0,0,0,0,1.20990716048664,0,5.7499787461924,0,0,0,0,0,0,0.284609546029793,0,0,0.195984794828755,0.0870592065804026,0.698906672968121,0,0,0,0,0.969890164884194,0,18.3044400032231,0.137041924646751,0,0.253243183823515,0,0,1.28071796843612,0.19980960958213,0,0,0.514784993585894,0,0.248505071130865,0,0,0,0,0,0,0.684526894459965,2.55493176133945,0,0,2.23425921017803,1.14580212005842,0,0.399358000997982,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.272406812223151,0,0.412618309791701,0,2.92466059016951,15.476039091159,0.121499113316049,0,0,0.262272940674991,0,0,0.191915197319445,7.14695326373367,0.662091970365432,0,0,0,0.326587360109409,1.19730191562487,0,0,0.453248366080503,0,0,0.258565912723101,0.79339561045614,0,0,0.213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| ||
|short_description=p2@COL8A2 | |short_description=p2@COL8A2 | ||
}} | }} |
Latest revision as of 20:14, 17 September 2015
Short description: | p2@COL8A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_COL8A2_5end |
Coexpression cluster: | C3977_Osteoblast_Chondrocyte_Hair_Macrophage_osteosarcoma_retina_immature |
Association with transcript: | 17bp_to_ENST00000397799_5end |
EntrezGene: | COL8A2 |
HGNC: | 2216 |
UniProt: | P25067 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 7.92e-10 | 9 |
carbohydrate secreting cell | 7.92e-10 | 9 |
chondroblast | 5.71e-08 | 6 |
chondrocyte | 5.71e-08 | 6 |
extracellular matrix secreting cell | 5.25e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
eye | 1.72e-09 | 21 |
visual system | 1.72e-09 | 21 |
sense organ | 2.41e-09 | 24 |
sensory system | 2.41e-09 | 24 |
entire sense organ system | 2.41e-09 | 24 |
face | 7.72e-09 | 22 |
pigment epithelium of eye | 1.67e-08 | 11 |
jaw skeleton | 2.26e-08 | 4 |
splanchnocranium | 2.26e-08 | 4 |
camera-type eye | 3.39e-08 | 20 |
simple eye | 3.39e-08 | 20 |
immature eye | 3.39e-08 | 20 |
ocular region | 3.39e-08 | 20 |
eyeball of camera-type eye | 3.39e-08 | 20 |
optic cup | 3.39e-08 | 20 |
optic vesicle | 3.39e-08 | 20 |
eye primordium | 3.39e-08 | 20 |
posterior neural tube | 3.91e-08 | 15 |
chordal neural plate | 3.91e-08 | 15 |
anterior region of body | 6.04e-07 | 62 |
craniocervical region | 6.04e-07 | 62 |