FFCP PHASE1:Hg19::chr1:209807970..209807983,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:209807970..209807983,- | |||
|coexpression_cluster_id=C571 | |coexpression_cluster_id=C571 | ||
|description=CAGE_peak_at_chr1:209807970..209807983,- | |description=CAGE_peak_at_chr1:209807970..209807983,- | ||
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|ontology_enrichment_celltype=CL:0002076!8.45e-29!43;CL:0002368!3.68e-27!13;CL:0000223!2.55e-19!59;CL:0000066!5.76e-19!254;CL:0002202!2.27e-16!9;CL:0002632!2.27e-16!9;CL:0000244!8.33e-13!4;CL:0000731!8.33e-13!4;CL:0002328!1.37e-10!3;CL:0002231!2.96e-10!3;CL:0000068!4.13e-10!3;CL:0000069!4.13e-10!3;CL:0000307!4.13e-10!3;CL:0000377!4.13e-10!3;CL:0002621!4.52e-10!3;CL:0002159!6.71e-08!13;CL:0002327!1.44e-07!4 | |ontology_enrichment_celltype=CL:0002076!8.45e-29!43;CL:0002368!3.68e-27!13;CL:0000223!2.55e-19!59;CL:0000066!5.76e-19!254;CL:0002202!2.27e-16!9;CL:0002632!2.27e-16!9;CL:0000244!8.33e-13!4;CL:0000731!8.33e-13!4;CL:0002328!1.37e-10!3;CL:0002231!2.96e-10!3;CL:0000068!4.13e-10!3;CL:0000069!4.13e-10!3;CL:0000307!4.13e-10!3;CL:0000377!4.13e-10!3;CL:0002621!4.52e-10!3;CL:0002159!6.71e-08!13;CL:0002327!1.44e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002368;3.25e-39;13!CL:0002328;1.65e-32;3!CL:0000244;3.92e-24;4!CL:0000731;3.92e-24;4!CL:0002076;7.34e-20;42!CL:0002202;2.82e-19;9!CL:0002632;2.82e-19;9!CL:0002231;2.42e-15;3!CL:0002327;2.49e-11;4!CL:0002159;3.15e-07;14 | |ontology_enrichment_celltype_v019=CL:0002368;3.25e-39;13!CL:0002328;1.65e-32;3!CL:0000244;3.92e-24;4!CL:0000731;3.92e-24;4!CL:0002076;7.34e-20;42!CL:0002202;2.82e-19;9!CL:0002632;2.82e-19;9!CL:0002231;2.42e-15;3!CL:0002327;2.49e-11;4!CL:0002159;3.15e-07;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0002368,2.13e-39,13;CL:0002328,1.14e-32,3;CL:0000244,2.86e-24,4;CL:0000731,2.86e-24,4;CL:0002076,5.46e-24,42;CL:0002202,2.52e-19,9;CL:0002632,2.52e-19,9;CL:0000223,5.27e-17,58;CL:0002231,2.26e-15,3;CL:0002327,3.07e-11,4;CL:0000066,4.72e-11,253;CL:0002159,3.87e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000223;8.37e-10;58 | |ontology_enrichment_development_v019=CL:0000223;8.37e-10;58 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.37e-13!169;UBERON:0000925!3.37e-13!169;UBERON:0006595!3.37e-13!169;UBERON:0005631!1.00e-11!14;UBERON:0000158!1.00e-11!14;UBERON:0004815!1.37e-10!3;UBERON:0002031!1.37e-10!3;UBERON:0000365!3.08e-10!5;UBERON:0007196!4.25e-10!14;UBERON:0001558!4.25e-10!14;UBERON:0000305!4.26e-10!7;UBERON:0001949!4.52e-10!3;UBERON:0004871!8.62e-09!8;UBERON:0005910!1.60e-08!6;UBERON:0001004!4.13e-08!72;UBERON:0002185!5.12e-08!4;UBERON:0001911!1.44e-07!4;UBERON:0005333!1.44e-07!4;UBERON:0008425!1.44e-07!4;UBERON:0005311!1.44e-07!4;UBERON:0005911!2.02e-07!82 | |ontology_enrichment_uberon=UBERON:0004119!3.37e-13!169;UBERON:0000925!3.37e-13!169;UBERON:0006595!3.37e-13!169;UBERON:0005631!1.00e-11!14;UBERON:0000158!1.00e-11!14;UBERON:0004815!1.37e-10!3;UBERON:0002031!1.37e-10!3;UBERON:0000365!3.08e-10!5;UBERON:0007196!4.25e-10!14;UBERON:0001558!4.25e-10!14;UBERON:0000305!4.26e-10!7;UBERON:0001949!4.52e-10!3;UBERON:0004871!8.62e-09!8;UBERON:0005910!1.60e-08!6;UBERON:0001004!4.13e-08!72;UBERON:0002185!5.12e-08!4;UBERON:0001911!1.44e-07!4;UBERON:0005333!1.44e-07!4;UBERON:0008425!1.44e-07!4;UBERON:0005311!1.44e-07!4;UBERON:0005911!2.02e-07!82 | ||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.65e-32;3!UBERON:0002031;1.65e-32;3!UBERON:0002185;8.67e-20;5!UBERON:0000365;1.92e-19;5!UBERON:0005910;2.60e-16;6!UBERON:0000485;2.59e-14;7!UBERON:0000486;3.52e-14;12!UBERON:0005911;1.52e-12;36!UBERON:0007196;1.15e-11;15!UBERON:0001558;1.15e-11;15!UBERON:0001911;2.49e-11;4!UBERON:0000065;1.28e-08;44!UBERON:0004807;6.31e-08;22 | |ontology_enrichment_uberon_v019=UBERON:0004815;1.65e-32;3!UBERON:0002031;1.65e-32;3!UBERON:0002185;8.67e-20;5!UBERON:0000365;1.92e-19;5!UBERON:0005910;2.60e-16;6!UBERON:0000485;2.59e-14;7!UBERON:0000486;3.52e-14;12!UBERON:0005911;1.52e-12;36!UBERON:0007196;1.15e-11;15!UBERON:0001558;1.15e-11;15!UBERON:0001911;2.49e-11;4!UBERON:0000065;1.28e-08;44!UBERON:0004807;6.31e-08;22 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.14e-32,3;UBERON:0002031,1.14e-32,3;UBERON:0002185,6.95e-20,5;UBERON:0000365,1.49e-19,5;UBERON:0005910,2.11e-16,6;UBERON:0005153,2.23e-13,37;UBERON:0007196,1.07e-11,15;UBERON:0001558,1.07e-11,15;UBERON:0000485,2.60e-11,9;UBERON:0001911,3.07e-11,4;UBERON:0005333,3.07e-11,4;UBERON:0008425,3.07e-11,4;UBERON:0005311,3.07e-11,4;UBERON:0005157,2.17e-10,47;UBERON:0005911,2.42e-09,82;UBERON:0004119,3.25e-09,160;UBERON:0000925,3.25e-09,160;UBERON:0006595,3.25e-09,160;UBERON:0000065,5.22e-09,54;UBERON:0001004,2.80e-08,74 | |||
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| ||
|short_description=p@chr1:209807970..209807983,- | |short_description=p@chr1:209807970..209807983,- | ||
}} | }} |
Latest revision as of 03:20, 28 July 2015
Short description: | p@chr1:209807970..209807983, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:209807970..209807983, - |
Coexpression cluster: | C571_Bronchial_Prostate_Small_Tracheal_Mallassezderived_Urothelial_Gingival |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 2.13e-39 | 13 |
bronchial epithelial cell | 1.14e-32 | 3 |
transitional epithelial cell | 2.86e-24 | 4 |
urothelial cell | 2.86e-24 | 4 |
endo-epithelial cell | 5.46e-24 | 42 |
epithelial cell of tracheobronchial tree | 2.52e-19 | 9 |
epithelial cell of lower respiratory tract | 2.52e-19 | 9 |
endodermal cell | 5.27e-17 | 58 |
epithelial cell of prostate | 2.26e-15 | 3 |
mammary gland epithelial cell | 3.07e-11 | 4 |
epithelial cell | 4.72e-11 | 253 |
general ecto-epithelial cell | 3.87e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.14e-32 | 3 |
epithelium of bronchus | 1.14e-32 | 3 |
bronchus | 6.95e-20 | 5 |
urothelium | 1.49e-19 | 5 |
transitional epithelium | 2.11e-16 | 6 |
epithelial bud | 2.23e-13 | 37 |
tracheobronchial tree | 1.07e-11 | 15 |
lower respiratory tract | 1.07e-11 | 15 |
simple columnar epithelium | 2.60e-11 | 9 |
mammary gland | 3.07e-11 | 4 |
mammary bud | 3.07e-11 | 4 |
mammary ridge | 3.07e-11 | 4 |
mammary placode | 3.07e-11 | 4 |
epithelial fold | 2.17e-10 | 47 |
endo-epithelium | 2.42e-09 | 82 |
endoderm-derived structure | 3.25e-09 | 160 |
endoderm | 3.25e-09 | 160 |
presumptive endoderm | 3.25e-09 | 160 |
respiratory tract | 5.22e-09 | 54 |
respiratory system | 2.80e-08 | 74 |