FFCP PHASE1:Hg19::chr14:54420133..54420150,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=652 | |EntrezGene=652 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1071 | |HGNC=1071 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000559501_5end | |association_with_transcript=0bp_to_ENST00000559501_5end | ||
|cluster_id=chr14:54420133..54420150,- | |||
|description=CAGE_peak_3_at_BMP4_5end | |description=CAGE_peak_3_at_BMP4_5end | ||
|id=chr14:54420133..54420150,- | |id=chr14:54420133..54420150,- | ||
|ontology_enrichment_celltype=CL:0002139!6.71e-15!24;CL:0000213!1.01e-13!57;CL:0000215!1.01e-13!57;CL:0000115!2.15e-12!35;CL:0002078!4.36e-12!44;CL:0000222!1.72e-10!119;CL:0000071!1.77e-10!18;CL:0002546!1.77e-10!18;CL:1000413!8.13e-07!9 | |ontology_enrichment_celltype=CL:0002139!6.71e-15!24;CL:0000213!1.01e-13!57;CL:0000215!1.01e-13!57;CL:0000115!2.15e-12!35;CL:0002078!4.36e-12!44;CL:0000222!1.72e-10!119;CL:0000071!1.77e-10!18;CL:0002546!1.77e-10!18;CL:1000413!8.13e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002139;8.69e-26;24!CL:0000115;1.02e-21;36!CL:0000071;5.65e-18;18!CL:0002078;3.15e-17;45!CL:0000213;7.65e-14;58!CL:0000215;7.65e-14;58!CL:1000413;4.87e-11;9!CL:0002138;1.54e-09;6!CL:0002544;1.20e-07;6!CL:0002543;1.41e-07;6 | |ontology_enrichment_celltype_v019=CL:0002139;8.69e-26;24!CL:0000115;1.02e-21;36!CL:0000071;5.65e-18;18!CL:0002078;3.15e-17;45!CL:0000213;7.65e-14;58!CL:0000215;7.65e-14;58!CL:1000413;4.87e-11;9!CL:0002138;1.54e-09;6!CL:0002544;1.20e-07;6!CL:0002543;1.41e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.55e-25,24;CL:0000115,1.16e-24,36;CL:0000213,2.30e-24,58;CL:0000215,2.30e-24,58;CL:0002078,3.32e-24,45;CL:0000071,9.48e-18,18;CL:0002546,9.48e-18,18;CL:0000222,7.22e-14,121;CL:1000413,9.06e-11,9;CL:0005020,1.59e-09,6;CL:0002138,1.59e-09,6;CL:0005022,1.59e-09,6;CL:0002543,1.26e-07,6;CL:0002321,1.31e-07,250;CL:0002544,2.27e-07,6;CL:0000066,4.83e-07,253 | |||
|ontology_enrichment_development_v019=CL:0002546;5.65e-18;18!CL:0005022;1.54e-09;6 | |ontology_enrichment_development_v019=CL:0002546;5.65e-18;18!CL:0005022;1.54e-09;6 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000477!5.78e-14!286;UBERON:0000483!9.61e-12!309;UBERON:0000119!1.31e-11!312;UBERON:0000481!6.12e-11!347;UBERON:0006914!1.08e-10!25;UBERON:0003914!1.70e-10!118;UBERON:0001986!1.77e-10!18;UBERON:0004638!1.77e-10!18;UBERON:0004852!1.77e-10!18;UBERON:0004111!2.43e-10!241;UBERON:0000490!4.30e-10!138;UBERON:0002049!9.97e-10!79;UBERON:0007798!9.97e-10!79;UBERON:0000468!1.48e-09!659;UBERON:0000487!4.01e-09!22;UBERON:0000922!6.65e-08!612;UBERON:0000467!9.10e-08!625;UBERON:0002100!9.14e-08!216;UBERON:0001009!1.20e-07!113;UBERON:0000480!1.24e-07!626;UBERON:0000055!1.86e-07!69;UBERON:0004535!3.27e-07!110;UBERON:0004872!3.60e-07!84;UBERON:0005256!3.71e-07!143;UBERON:0003104!4.14e-07!238;UBERON:0009142!4.14e-07!238;UBERON:0001007!7.62e-07!155;UBERON:0001555!7.62e-07!155;UBERON:0007026!7.62e-07!155;UBERON:0003915!8.13e-07!9;UBERON:0004700!8.13e-07!9;UBERON:0001917!8.13e-07!9 | |ontology_enrichment_uberon=UBERON:0000477!5.78e-14!286;UBERON:0000483!9.61e-12!309;UBERON:0000119!1.31e-11!312;UBERON:0000481!6.12e-11!347;UBERON:0006914!1.08e-10!25;UBERON:0003914!1.70e-10!118;UBERON:0001986!1.77e-10!18;UBERON:0004638!1.77e-10!18;UBERON:0004852!1.77e-10!18;UBERON:0004111!2.43e-10!241;UBERON:0000490!4.30e-10!138;UBERON:0002049!9.97e-10!79;UBERON:0007798!9.97e-10!79;UBERON:0000468!1.48e-09!659;UBERON:0000487!4.01e-09!22;UBERON:0000922!6.65e-08!612;UBERON:0000467!9.10e-08!625;UBERON:0002100!9.14e-08!216;UBERON:0001009!1.20e-07!113;UBERON:0000480!1.24e-07!626;UBERON:0000055!1.86e-07!69;UBERON:0004535!3.27e-07!110;UBERON:0004872!3.60e-07!84;UBERON:0005256!3.71e-07!143;UBERON:0003104!4.14e-07!238;UBERON:0009142!4.14e-07!238;UBERON:0001007!7.62e-07!155;UBERON:0001555!7.62e-07!155;UBERON:0007026!7.62e-07!155;UBERON:0003915!8.13e-07!9;UBERON:0004700!8.13e-07!9;UBERON:0001917!8.13e-07!9 | ||
|ontology_enrichment_uberon_v019=UBERON:0006914;5.23e-18;25!UBERON:0004638;5.65e-18;18!UBERON:0001986;5.65e-18;18!UBERON:0004852;5.65e-18;18!UBERON:0000487;2.62e-15;22!UBERON:0000490;2.08e-11;33!UBERON:0003915;4.87e-11;9!UBERON:0004700;4.87e-11;9!UBERON:0001917;4.87e-11;9!UBERON:0005409;2.27e-07;22!UBERON:0001473;8.17e-07;8!UBERON:0004536;8.17e-07;8!UBERON:0006558;8.17e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0006914;5.23e-18;25!UBERON:0004638;5.65e-18;18!UBERON:0001986;5.65e-18;18!UBERON:0004852;5.65e-18;18!UBERON:0000487;2.62e-15;22!UBERON:0000490;2.08e-11;33!UBERON:0003915;4.87e-11;9!UBERON:0004700;4.87e-11;9!UBERON:0001917;4.87e-11;9!UBERON:0005409;2.27e-07;22!UBERON:0001473;8.17e-07;8!UBERON:0004536;8.17e-07;8!UBERON:0006558;8.17e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006914,6.85e-18,25;UBERON:0004638,9.48e-18,18;UBERON:0001986,9.48e-18,18;UBERON:0004852,9.48e-18,18;UBERON:0000487,3.90e-15,22;UBERON:0000490,3.89e-11,148;UBERON:0003915,9.06e-11,9;UBERON:0004700,9.06e-11,9;UBERON:0001917,9.06e-11,9;UBERON:0002049,1.19e-10,78;UBERON:0007798,1.19e-10,78;UBERON:0000055,2.52e-10,68;UBERON:0003914,7.06e-10,117;UBERON:0000483,1.37e-08,306;UBERON:0000119,2.62e-08,309;UBERON:0001007,7.97e-08,145;UBERON:0001555,7.97e-08,145;UBERON:0007026,7.97e-08,145;UBERON:0004111,1.37e-07,240;UBERON:0004535,3.65e-07,109;UBERON:0007500,5.12e-07,59;UBERON:0001981,5.12e-07,59;UBERON:0004537,5.12e-07,59;UBERON:0006965,5.12e-07,59;UBERON:0004119,6.96e-07,160;UBERON:0000925,6.96e-07,160;UBERON:0006595,6.96e-07,160;UBERON:0001473,8.36e-07,8;UBERON:0004536,8.36e-07,8;UBERON:0006558,8.36e-07,8 | |||
|phase1_expression=0.54503513781167,0.642301571672949,1.40954404095971,1.0007329835313,0.446961094427288,2.61701557230111,2.53299878168311,0,0,0,0,0,0,0.123766352960047,0.662794751455832,0,0,0,1.46379839637152,0.738726348460727,1.83600622119828,3.76145665773705,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.767175371061182,1.44575660953827,0,5.21447468258965,0.795285947051099,0,0.378139268656271,2.4390233720882,1.40535657109002,0.982343066232845,0,0,0,0,0,0,0,0,5.16782259153433,3.4409383804245,5.55424802572151,1.13061588384802,4.61449379830897,7.97842321626196,3.34391946458897,7.75250277507987,12.8075854567216,14.0582657361161,3.22263453687318,0,14.1555993377938,1.10298924103761,13.7724131139899,10.5373679375214,2.02076435363553,3.60356737546631,3.06633274931766,1.89853131913626,3.11442964681692,0,0,0,0,0.633152558322899,0.662045904066094,0.286836620748814,0,4.48542080113846,0,4.19334832309172,0.311211035399766,0.538842688278752,0.490385709340376,0.454072282934794,0.576175924479999,0.468642863667593,0.312160076830321,0.570471821544449,0.747243402759005,0.117434498643765,0,0.140450806702248,0.204154171254893,0,0.206651562351531,3.56400857184616,4.94533858557114,0,0,1.0100166837244,0.125118519871964,0.277064115484183,1.75591048352335,1.5324389789951,3.45547535485173,0.907457465280168,0,0,0,0,0,0,0.18611685633159,0,0,0,0,1.61646056818812,0.355009592516614,0,0.169560592310488,0,0.272746120590835,0,0.243947412259191,0.265059536642971,1.39432731443422,0.829288440122964,1.7662459561294,0.36497735907583,1.56449532329816,3.21620469096443,1.38134921352481,0,0,0,0,0,0,0,0,0,0.196221465125346,0,3.69077727312324,0,2.057870056657,0,0,0,0,0.882926198829301,0.245976877086227,1.3725424823882,0,0,0,0,0,0,0,0.115930404975077,1.29149563659404,15.1584770149128,10.1856812766854,11.7957574385451,0,0.858486162094873,0,0,0,0,0,0,0,0,1.15014803749563,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,2.45616259939778,0,0,0,0,0,0,0,5.86209773998405,1.08524321078289,0,0,6.39705507736582,0,2.41151501647669,0.871533458600294,3.39908170018994,0,0,0,0,0,0,0.289562613335158,0.61642896765115,0.358121926479791,0,0.197030760201927,0,0,0,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0,0.831883446123229,0,0.315404830067869,0.937131319941706,0.902838299183157,0,1.03473071292505,0,0.737476674166813,2.86715927744673,0.391602314925481,0,0,0,0,0.303127571446259,0,0,0.744323423456331,0,0,1.53766979106841,0.511707249066704,1.28683136914886,1.48418066444991,0,0.355123450626254,0,0.519254429183621,0.116210378459959,0.120859449591622,0.200506470303285,0,14.3518060205758,6.19109971222838,23.4712702777369,0,0,0,0,0.105551628892876,4.54933536283586,1.53084334748864,6.47747748306418,55.5218109685042,0.541892875087706,3.01013864312912,0,0.831076008928724,0,0,0,10.2580050046556,4.92021968549559,7.15832468261467,1.23649213977267,18.130754034032,19.9672989807823,0,0,0,0.096670718292122,0.154048617114644,0,0,0.107420244868274,0.290033387828457,0.170453254832202,0.356128142586949,0,0.192190067365106,0,0,0,0,0,1.23213432070436,0.532306030317022,0,0,0.286249773483982,0.744316738719335,0.632758849437452,0.571890581771475,0,2.1396949401696,0,0,6.65528093058265,3.84351841630477,2.35624804691373,0.202182481573316,0,0,0.975267478179181,0.487426979262569,0,4.64099698787152,9.19135307699133,0,0,1.99031692572366,1.31535265576129,0,0.655894752046633,0.608731130888112,0,0.281695602532241,0.430234056612155,1.17898849215745,1.78335525740625,0,2.9555068941673,2.30506425071931,0,1.04980416073495,0,0,0,1.03558180854457,0,0,0,0,0,0,0,0,0,0,0,0,10.1482867571099,1.92495971052672,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,1.42068073403207,0,0.593929361665277,0,0,0,8.23684417169504,0,0.211125408127993,0.398495976502139,0.552567831062295,0.251932747854276,0.102268682502155,0,0,4.04407580162971,0,0,1.38100767891707,0,0,0.969332746095218,0.0927680981618513,0,0.260427761085233,5.50997999976033,0,0,0.508507300585533,0.236387681767936,0,0,0,0,0.120596438625408,0,0.331737779793674,0.295547618953547,0.438770794307945,0,0,1.69290568708354,1.48124672601102,0.69169171316418,0.0897576444097721,0,0,0.824378340616761,0,0,0,0,0,0,0,0,0,0,1.46909527343233,0.706765357169704,3.02944095638928,2.98578579323551,0.530745387020035,4.27721101453538,0,0,0,0.741412462787447,0,0.468528891450678,0,0,0,0.394584402849391,3.62972148145992,0,0.695052375913368,0.300646838828985,0.103688191397247,0,0,0.627865836814451,0,0,0.277349346026277,0,0,0.0870592065804026,0.34945333648406,0.343972064943233,0,0,0,1.26085721434945,0.0882561266915003,5.64951851951331,0,0,0.0633107959558787,0,0.0801588202515337,0.85381197895741,0,3.31407959454444,19.013074963542,0.171594997861965,1.1524383839052,0.12425253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| ||
|short_description=p3@BMP4 | |short_description=p3@BMP4 | ||
}} | }} |
Latest revision as of 07:34, 20 September 2015
Short description: | p3@BMP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BMP4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000559501_5end |
EntrezGene: | BMP4 |
HGNC: | 1071 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.55e-25 | 24 |
endothelial cell | 1.16e-24 | 36 |
lining cell | 2.30e-24 | 58 |
barrier cell | 2.30e-24 | 58 |
meso-epithelial cell | 3.32e-24 | 45 |
blood vessel endothelial cell | 9.48e-18 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.48e-18 | 18 |
mesodermal cell | 7.22e-14 | 121 |
endothelial cell of artery | 9.06e-11 | 9 |
lymphangioblast | 1.59e-09 | 6 |
endothelial cell of lymphatic vessel | 1.59e-09 | 6 |
vascular lymphangioblast | 1.59e-09 | 6 |
vein endothelial cell | 1.26e-07 | 6 |
embryonic cell | 1.31e-07 | 250 |
aortic endothelial cell | 2.27e-07 | 6 |
epithelial cell | 4.83e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
squamous epithelium | 6.85e-18 | 25 |
blood vessel endothelium | 9.48e-18 | 18 |
endothelium | 9.48e-18 | 18 |
cardiovascular system endothelium | 9.48e-18 | 18 |
simple squamous epithelium | 3.90e-15 | 22 |
unilaminar epithelium | 3.89e-11 | 148 |
endothelial tube | 9.06e-11 | 9 |
arterial system endothelium | 9.06e-11 | 9 |
endothelium of artery | 9.06e-11 | 9 |
vasculature | 1.19e-10 | 78 |
vascular system | 1.19e-10 | 78 |
vessel | 2.52e-10 | 68 |
epithelial tube | 7.06e-10 | 117 |
epithelium | 1.37e-08 | 306 |
cell layer | 2.62e-08 | 309 |
digestive system | 7.97e-08 | 145 |
digestive tract | 7.97e-08 | 145 |
primitive gut | 7.97e-08 | 145 |
anatomical conduit | 1.37e-07 | 240 |
cardiovascular system | 3.65e-07 | 109 |
epithelial tube open at both ends | 5.12e-07 | 59 |
blood vessel | 5.12e-07 | 59 |
blood vasculature | 5.12e-07 | 59 |
vascular cord | 5.12e-07 | 59 |
endoderm-derived structure | 6.96e-07 | 160 |
endoderm | 6.96e-07 | 160 |
presumptive endoderm | 6.96e-07 | 160 |
lymphatic vessel | 8.36e-07 | 8 |
lymph vasculature | 8.36e-07 | 8 |
lymphatic part of lymphoid system | 8.36e-07 | 8 |