FFCP PHASE1:Hg19::chr21:47532028..47532078,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1292 | |EntrezGene=1292 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2212 | |HGNC=2212 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-253bp_to_ENST00000460886_5end | |association_with_transcript=-253bp_to_ENST00000460886_5end | ||
|cluster_id=chr21:47532028..47532078,+ | |||
|coexpression_cluster_id=C198 | |coexpression_cluster_id=C198 | ||
|description=CAGE_peak_4_at_COL6A2_5end | |description=CAGE_peak_4_at_COL6A2_5end | ||
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|ontology_enrichment_celltype=CL:0000055!6.28e-45!180;CL:0000057!1.93e-26!75;CL:0000680!5.73e-18!57;CL:0000056!5.73e-18!57;CL:0000355!5.73e-18!57;CL:0000187!5.16e-17!54;CL:0000183!1.64e-16!59;CL:0000393!1.06e-15!60;CL:0000211!1.06e-15!60;CL:0000192!1.66e-12!42;CL:0000514!1.66e-12!42;CL:0000048!8.35e-12!430;CL:0002620!2.68e-11!23;CL:0000723!5.55e-11!436;CL:0000034!1.62e-10!444;CL:0000359!4.76e-09!32;CL:0000499!1.02e-07!27;CL:0000222!6.93e-07!119 | |ontology_enrichment_celltype=CL:0000055!6.28e-45!180;CL:0000057!1.93e-26!75;CL:0000680!5.73e-18!57;CL:0000056!5.73e-18!57;CL:0000355!5.73e-18!57;CL:0000187!5.16e-17!54;CL:0000183!1.64e-16!59;CL:0000393!1.06e-15!60;CL:0000211!1.06e-15!60;CL:0000192!1.66e-12!42;CL:0000514!1.66e-12!42;CL:0000048!8.35e-12!430;CL:0002620!2.68e-11!23;CL:0000723!5.55e-11!436;CL:0000034!1.62e-10!444;CL:0000359!4.76e-09!32;CL:0000499!1.02e-07!27;CL:0000222!6.93e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0002620;7.74e-13;23!CL:0000187;2.76e-12;55!CL:0000057;1.29e-11;73!CL:0000134;1.60e-11;55!CL:0000192;1.97e-11;43!CL:0000723;2.76e-11;61!CL:0000393;1.33e-10;61!CL:0000211;1.33e-10;61!CL:0000048;3.23e-10;58!CL:0000359;4.82e-10;32!CL:0002320;1.44e-09;188!CL:0000034;5.67e-08;69!CL:0002570;9.22e-08;8!CL:0002334;2.43e-07;12!CL:0000499;2.86e-07;28!CL:0002494;8.18e-07;16 | |ontology_enrichment_celltype_v019=CL:0002620;7.74e-13;23!CL:0000187;2.76e-12;55!CL:0000057;1.29e-11;73!CL:0000134;1.60e-11;55!CL:0000192;1.97e-11;43!CL:0000723;2.76e-11;61!CL:0000393;1.33e-10;61!CL:0000211;1.33e-10;61!CL:0000048;3.23e-10;58!CL:0000359;4.82e-10;32!CL:0002320;1.44e-09;188!CL:0000034;5.67e-08;69!CL:0002570;9.22e-08;8!CL:0002334;2.43e-07;12!CL:0000499;2.86e-07;28!CL:0002494;8.18e-07;16 | ||
|ontology_enrichment_celltype_v019_2=CL:0000057,5.02e-29,76;CL:0000680,3.29e-22,58;CL:0000056,3.29e-22,58;CL:0000355,3.29e-22,58;CL:0000048,1.62e-21,427;CL:0000187,5.03e-21,55;CL:0000723,2.55e-20,433;CL:0000393,3.28e-19,61;CL:0000211,3.28e-19,61;CL:0000034,8.58e-19,441;CL:0000192,1.95e-15,43;CL:0000514,1.95e-15,43;CL:0002620,6.70e-13,23;CL:0000359,1.27e-10,32;CL:0002320,7.32e-10,361;CL:0000134,7.84e-08,354;CL:0002570,9.84e-08,8;CL:0000499,2.37e-07,28;CL:0002334,3.66e-07,12;CL:0002494,7.54e-07,16 | |||
|ontology_enrichment_development_v019=CL:0000355;5.01e-12;58!CL:0000514;1.97e-11;43 | |ontology_enrichment_development_v019=CL:0000355;5.01e-12;58!CL:0000514;1.97e-11;43 | ||
|ontology_enrichment_disease=DOID:2394!6.47e-07!14 | |ontology_enrichment_disease=DOID:2394!6.47e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.54e-07;14 | |ontology_enrichment_disease_v019=DOID:2394;1.54e-07;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.29e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.08e-24!83;UBERON:0002329!1.08e-24!83;UBERON:0003077!1.08e-24!83;UBERON:0003059!1.08e-24!83;UBERON:0007282!1.08e-24!83;UBERON:0009618!1.08e-24!83;UBERON:0007285!1.08e-24!83;UBERON:0004290!5.08e-23!70;UBERON:0002385!3.09e-19!63;UBERON:0001015!3.09e-19!63;UBERON:0000383!3.09e-19!63;UBERON:0001134!7.15e-19!61;UBERON:0002036!7.15e-19!61;UBERON:0003082!7.15e-19!61;UBERON:0000486!4.91e-18!82;UBERON:0005256!8.69e-17!143;UBERON:0002199!1.55e-11!45;UBERON:0002416!1.55e-11!45;UBERON:0002100!4.68e-11!216;UBERON:0003102!1.31e-10!95;UBERON:0000475!1.32e-09!365;UBERON:0002097!5.62e-09!40;UBERON:0001013!5.93e-09!14;UBERON:0003104!5.50e-08!238;UBERON:0009142!5.50e-08!238;UBERON:0000481!6.46e-07!347 | |ontology_enrichment_uberon=UBERON:0000914!1.08e-24!83;UBERON:0002329!1.08e-24!83;UBERON:0003077!1.08e-24!83;UBERON:0003059!1.08e-24!83;UBERON:0007282!1.08e-24!83;UBERON:0009618!1.08e-24!83;UBERON:0007285!1.08e-24!83;UBERON:0004290!5.08e-23!70;UBERON:0002385!3.09e-19!63;UBERON:0001015!3.09e-19!63;UBERON:0000383!3.09e-19!63;UBERON:0001134!7.15e-19!61;UBERON:0002036!7.15e-19!61;UBERON:0003082!7.15e-19!61;UBERON:0000486!4.91e-18!82;UBERON:0005256!8.69e-17!143;UBERON:0002199!1.55e-11!45;UBERON:0002416!1.55e-11!45;UBERON:0002100!4.68e-11!216;UBERON:0003102!1.31e-10!95;UBERON:0000475!1.32e-09!365;UBERON:0002097!5.62e-09!40;UBERON:0001013!5.93e-09!14;UBERON:0003104!5.50e-08!238;UBERON:0009142!5.50e-08!238;UBERON:0000481!6.46e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0001013;9.02e-11;14!UBERON:0002384;2.82e-10;198!UBERON:0002385;3.42e-10;31!UBERON:0001015;3.42e-10;31!UBERON:0000383;3.42e-10;31!UBERON:0002199;6.05e-09;46!UBERON:0002416;6.05e-09;46!UBERON:0003102;8.75e-08;50!UBERON:0002097;1.47e-07;41!UBERON:0002204;2.69e-07;70!UBERON:0001134;4.28e-07;16!UBERON:0002036;4.28e-07;16 | |ontology_enrichment_uberon_v019=UBERON:0001013;9.02e-11;14!UBERON:0002384;2.82e-10;198!UBERON:0002385;3.42e-10;31!UBERON:0001015;3.42e-10;31!UBERON:0000383;3.42e-10;31!UBERON:0002199;6.05e-09;46!UBERON:0002416;6.05e-09;46!UBERON:0003102;8.75e-08;50!UBERON:0002097;1.47e-07;41!UBERON:0002204;2.69e-07;70!UBERON:0001134;4.28e-07;16!UBERON:0002036;4.28e-07;16 | ||
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| ||
|short_description=p4@COL6A2 | |short_description=p4@COL6A2 | ||
}} | }} |
Latest revision as of 22:53, 18 September 2015
Short description: | p4@COL6A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_COL6A2_5end |
Coexpression cluster: | C198_Mesenchymal_Hair_Hepatic_Fibroblast_Smooth_tenocyte_Pericytes |
Association with transcript: | -253bp_to_ENST00000460886_5end |
EntrezGene: | COL6A2 |
HGNC: | 2212 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 5.02e-29 | 76 |
muscle precursor cell | 3.29e-22 | 58 |
myoblast | 3.29e-22 | 58 |
multi-potent skeletal muscle stem cell | 3.29e-22 | 58 |
multi fate stem cell | 1.62e-21 | 427 |
muscle cell | 5.03e-21 | 55 |
somatic stem cell | 2.55e-20 | 433 |
electrically responsive cell | 3.28e-19 | 61 |
electrically active cell | 3.28e-19 | 61 |
stem cell | 8.58e-19 | 441 |
smooth muscle cell | 1.95e-15 | 43 |
smooth muscle myoblast | 1.95e-15 | 43 |
skin fibroblast | 6.70e-13 | 23 |
vascular associated smooth muscle cell | 1.27e-10 | 32 |
connective tissue cell | 7.32e-10 | 361 |
mesenchymal cell | 7.84e-08 | 354 |
mesenchymal stem cell of adipose | 9.84e-08 | 8 |
stromal cell | 2.37e-07 | 28 |
preadipocyte | 3.66e-07 | 12 |
cardiocyte | 7.54e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 3.24e-27 | 73 |
somite | 3.52e-27 | 71 |
presomitic mesoderm | 3.52e-27 | 71 |
presumptive segmental plate | 3.52e-27 | 71 |
dermomyotome | 3.52e-27 | 71 |
trunk paraxial mesoderm | 3.52e-27 | 71 |
paraxial mesoderm | 1.89e-26 | 72 |
presumptive paraxial mesoderm | 1.89e-26 | 72 |
epithelial vesicle | 1.67e-22 | 78 |
skeletal muscle tissue | 4.34e-22 | 62 |
striated muscle tissue | 4.34e-22 | 62 |
myotome | 4.34e-22 | 62 |
muscle tissue | 6.04e-22 | 64 |
musculature | 6.04e-22 | 64 |
musculature of body | 6.04e-22 | 64 |
multilaminar epithelium | 6.37e-22 | 83 |
trunk mesenchyme | 8.11e-19 | 122 |
mesenchyme | 9.38e-19 | 160 |
entire embryonic mesenchyme | 9.38e-19 | 160 |
integument | 2.74e-13 | 46 |
integumental system | 2.74e-13 | 46 |
trunk | 3.56e-11 | 199 |
surface structure | 4.05e-11 | 99 |
adipose tissue | 1.05e-10 | 14 |
unilaminar epithelium | 1.08e-10 | 148 |
mesoderm | 2.30e-10 | 315 |
mesoderm-derived structure | 2.30e-10 | 315 |
presumptive mesoderm | 2.30e-10 | 315 |
skin of body | 3.38e-10 | 41 |
connective tissue | 3.39e-10 | 371 |
systemic artery | 2.52e-07 | 33 |
systemic arterial system | 2.52e-07 | 33 |
splanchnic layer of lateral plate mesoderm | 3.94e-07 | 83 |
tissue | 4.04e-07 | 773 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.29e-07 | 14 |