FFCP PHASE1:Hg19::chr6:152589466..152589487,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |EntrezGene=23345 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |HGNC=17089 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-160bp_to_ENST00000545694_5end | |association_with_transcript=-160bp_to_ENST00000545694_5end | ||
|cluster_id=chr6:152589466..152589487,- | |||
|coexpression_cluster_id=C38 | |coexpression_cluster_id=C38 | ||
|description=CAGE_peak_26_at_SYNE1_5end | |description=CAGE_peak_26_at_SYNE1_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000138;1.22e-09;6!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | |ontology_enrichment_celltype_v019=CL:0000138;1.22e-09;6!CL:0000153;7.48e-07;9!CL:0000447;7.48e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000058,1.22e-09,6;CL:0000138,1.22e-09,6;CL:0000153,7.48e-07,9;CL:0000447,7.48e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0005795;8.98e-21;10 | |ontology_enrichment_development_v019=UBERON:0005795;8.98e-21;10 | ||
|ontology_enrichment_disease=DOID:3371!9.91e-07!1;DOID:4549!9.91e-07!1;DOID:5861!9.91e-07!1;DOID:6496!9.91e-07!1 | |ontology_enrichment_disease=DOID:3371!9.91e-07!1;DOID:4549!9.91e-07!1;DOID:5861!9.91e-07!1;DOID:6496!9.91e-07!1 | ||
|ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | |ontology_enrichment_disease_v019=DOID:3371;1.46e-50;1!DOID:4549;1.46e-50;1!DOID:5861;1.46e-50;1!DOID:6496;1.46e-50;1!DOID:201;1.22e-09;6!DOID:0060100;1.22e-09;6 | ||
|ontology_enrichment_disease_v019_2=DOID:3371,1.46e-50,1;DOID:4549,1.46e-50,1;DOID:5861,1.46e-50,1;DOID:6496,1.46e-50,1;DOID:201,1.22e-09,6;DOID:0060100,1.22e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0000341!4.52e-11!2;UBERON:0001046!6.05e-09!19;UBERON:0007023!1.21e-08!115;UBERON:0001723!2.20e-07!3;UBERON:0001033!2.20e-07!3;UBERON:0010056!2.20e-07!3;UBERON:0001896!3.45e-07!3;UBERON:0005290!3.45e-07!3;UBERON:0010096!3.45e-07!3 | |ontology_enrichment_uberon=UBERON:0000341!4.52e-11!2;UBERON:0001046!6.05e-09!19;UBERON:0007023!1.21e-08!115;UBERON:0001723!2.20e-07!3;UBERON:0001033!2.20e-07!3;UBERON:0010056!2.20e-07!3;UBERON:0001896!3.45e-07!3;UBERON:0005290!3.45e-07!3;UBERON:0010096!3.45e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0005795;2.42e-50;1!UBERON:0006834;5.12e-50;1!UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0000995;1.16e-12;17!UBERON:0003975;5.09e-12;18!UBERON:0002050;2.94e-11;5!UBERON:0005423;2.94e-11;5!UBERON:0004175;1.86e-10;21!UBERON:0000002;1.50e-09;6!UBERON:0001560;1.50e-09;6 | |ontology_enrichment_uberon_v019=UBERON:0005795;2.42e-50;1!UBERON:0006834;5.12e-50;1!UBERON:0002418;6.76e-18;3!UBERON:0004755;6.76e-18;3!UBERON:0000995;1.16e-12;17!UBERON:0003975;5.09e-12;18!UBERON:0002050;2.94e-11;5!UBERON:0005423;2.94e-11;5!UBERON:0004175;1.86e-10;21!UBERON:0000002;1.50e-09;6!UBERON:0001560;1.50e-09;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006834,3.99e-50,1;UBERON:0005795,4.90e-21,22;UBERON:0002418,6.76e-18,3;UBERON:0004755,6.76e-18,3;UBERON:0000995,1.86e-10,21;UBERON:0003975,4.96e-10,22;UBERON:0000002,1.57e-09,6;UBERON:0001560,1.57e-09,6;UBERON:0004175,5.95e-09,25 | |||
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|short_description=p26@SYNE1 | |short_description=p26@SYNE1 | ||
}} | }} |
Latest revision as of 06:26, 16 September 2015
Short description: | p26@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_26_at_SYNE1_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | -160bp_to_ENST00000545694_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chondroblast | 1.22e-09 | 6 |
chondrocyte | 1.22e-09 | 6 |
GAG secreting cell | 7.48e-07 | 9 |
carbohydrate secreting cell | 7.48e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
uterus or analog | 3.99e-50 | 1 |
embryonic uterus | 4.90e-21 | 22 |
cartilage tissue | 6.76e-18 | 3 |
skeletal tissue | 6.76e-18 | 3 |
uterus | 1.86e-10 | 21 |
internal female genitalia | 4.96e-10 | 22 |
uterine cervix | 1.57e-09 | 6 |
neck of organ | 1.57e-09 | 6 |
internal genitalia | 5.95e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 1.46e-50 | 1 |
extraosseous chondrosarcoma | 1.46e-50 | 1 |
myxoid chondrosarcoma | 1.46e-50 | 1 |
extraskeletal myxoid chondrosarcoma | 1.46e-50 | 1 |
connective tissue cancer | 1.22e-09 | 6 |
musculoskeletal system cancer | 1.22e-09 | 6 |