FFCP PHASE1:Hg19::chr6:138014217..138014228,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:138014217..138014228,+ | |||
|description=CAGE_peak_at_chr6:138014217..138014228,+ | |description=CAGE_peak_at_chr6:138014217..138014228,+ | ||
|id=chr6:138014217..138014228,+ | |id=chr6:138014217..138014228,+ | ||
|ontology_enrichment_celltype=CL:0002166!1.00e-10!3;CL:1000507!1.20e-09!12;CL:1000494!1.20e-09!12;CL:1000449!1.62e-09!16;CL:0002149!8.46e-09!6;CL:0002255!8.46e-09!6;CL:1000497!2.46e-08!18;CL:0002518!2.46e-08!18;CL:0000159!3.36e-08!2;CL:0000569!9.84e-08!4;CL:0000011!9.84e-08!4 | |ontology_enrichment_celltype=CL:0002166!1.00e-10!3;CL:1000507!1.20e-09!12;CL:1000494!1.20e-09!12;CL:1000449!1.62e-09!16;CL:0002149!8.46e-09!6;CL:0002255!8.46e-09!6;CL:1000497!2.46e-08!18;CL:0002518!2.46e-08!18;CL:0000159!3.36e-08!2;CL:0000569!9.84e-08!4;CL:0000011!9.84e-08!4 | ||
|ontology_enrichment_celltype_v019=CL:0000319;1.06e-23;1!CL:0000159;1.48e-12;2!CL:0002589;2.19e-12;2!CL:0002596;3.42e-12;2!CL:1000507;8.09e-10;10!CL:1000494;8.09e-10;10!CL:0002592;1.46e-08;3!CL:1000449;7.63e-07;15 | |ontology_enrichment_celltype_v019=CL:0000319;1.06e-23;1!CL:0000159;1.48e-12;2!CL:0002589;2.19e-12;2!CL:0002596;3.42e-12;2!CL:1000507;8.09e-10;10!CL:1000494;8.09e-10;10!CL:0002592;1.46e-08;3!CL:1000449;7.63e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000319,1.07e-23,1;CL:0000159,1.48e-12,2;CL:0002589,1.85e-12,2;CL:0002596,3.24e-12,2;CL:1000507,8.84e-10,10;CL:1000494,8.84e-10,10;CL:0002592,1.51e-08,3;CL:1000449,8.09e-07,15;CL:0000359,8.42e-07,32 | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.19e-12;2 | |ontology_enrichment_development_v019=UBERON:0007297;2.19e-12;2 | ||
|ontology_enrichment_disease=DOID:120!7.25e-15!27;DOID:193!1.19e-13!29;DOID:3001!8.46e-09!6;DOID:4468!5.78e-08!2 | |ontology_enrichment_disease=DOID:120!7.25e-15!27;DOID:193!1.19e-13!29;DOID:3001!8.46e-09!6;DOID:4468!5.78e-08!2 | ||
|ontology_enrichment_disease_v019=DOID:3030;1.06e-23;1!DOID:4468;2.19e-12;2 | |ontology_enrichment_disease_v019=DOID:3030;1.06e-23;1!DOID:4468;2.19e-12;2 | ||
|ontology_enrichment_disease_v019_2=DOID:3030,1.07e-23,1;DOID:4468,2.90e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0006555!1.13e-11!17;UBERON:0005103!1.13e-11!17;UBERON:0000083!1.13e-11!17;UBERON:0009201!1.13e-11!17;UBERON:0004819!1.13e-11!17;UBERON:0006553!1.13e-11!17;UBERON:0003074!1.13e-11!17;UBERON:0003060!1.13e-11!17;UBERON:0000080!6.08e-11!18;UBERON:0002120!6.08e-11!18;UBERON:0004875!6.08e-11!18;UBERON:0005721!6.08e-11!18;UBERON:0005754!6.08e-11!18;UBERON:0007297!6.08e-11!18;UBERON:0004876!1.06e-09!20;UBERON:0009773!1.20e-09!12;UBERON:0001231!1.20e-09!12;UBERON:0004810!1.20e-09!12;UBERON:0004211!1.62e-09!16;UBERON:0001285!1.62e-09!16;UBERON:0007684!1.62e-09!16;UBERON:0003220!1.62e-09!16;UBERON:0004208!1.62e-09!16;UBERON:0003103!1.83e-09!69;UBERON:0003887!3.61e-09!21;UBERON:0003914!7.23e-09!118;UBERON:0002113!1.68e-08!27;UBERON:0003918!1.68e-08!27;UBERON:0005095!1.68e-08!27;UBERON:0007687!1.68e-08!27;UBERON:0000489!2.06e-08!32;UBERON:0006554!3.43e-08!44;UBERON:0001708!3.89e-08!4;UBERON:0001704!3.89e-08!4;UBERON:0001008!5.94e-08!45;UBERON:0001637!3.64e-07!42;UBERON:0003509!3.64e-07!42;UBERON:0004572!3.64e-07!42;UBERON:0000058!3.95e-07!26;UBERON:0003064!4.93e-07!37 | |ontology_enrichment_uberon=UBERON:0006555!1.13e-11!17;UBERON:0005103!1.13e-11!17;UBERON:0000083!1.13e-11!17;UBERON:0009201!1.13e-11!17;UBERON:0004819!1.13e-11!17;UBERON:0006553!1.13e-11!17;UBERON:0003074!1.13e-11!17;UBERON:0003060!1.13e-11!17;UBERON:0000080!6.08e-11!18;UBERON:0002120!6.08e-11!18;UBERON:0004875!6.08e-11!18;UBERON:0005721!6.08e-11!18;UBERON:0005754!6.08e-11!18;UBERON:0007297!6.08e-11!18;UBERON:0004876!1.06e-09!20;UBERON:0009773!1.20e-09!12;UBERON:0001231!1.20e-09!12;UBERON:0004810!1.20e-09!12;UBERON:0004211!1.62e-09!16;UBERON:0001285!1.62e-09!16;UBERON:0007684!1.62e-09!16;UBERON:0003220!1.62e-09!16;UBERON:0004208!1.62e-09!16;UBERON:0003103!1.83e-09!69;UBERON:0003887!3.61e-09!21;UBERON:0003914!7.23e-09!118;UBERON:0002113!1.68e-08!27;UBERON:0003918!1.68e-08!27;UBERON:0005095!1.68e-08!27;UBERON:0007687!1.68e-08!27;UBERON:0000489!2.06e-08!32;UBERON:0006554!3.43e-08!44;UBERON:0001708!3.89e-08!4;UBERON:0001704!3.89e-08!4;UBERON:0001008!5.94e-08!45;UBERON:0001637!3.64e-07!42;UBERON:0003509!3.64e-07!42;UBERON:0004572!3.64e-07!42;UBERON:0000058!3.95e-07!26;UBERON:0003064!4.93e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0001301;2.34e-23;1!UBERON:0001529;2.19e-12;2!UBERON:0007204;2.19e-12;2!UBERON:0005396;3.42e-12;2!UBERON:0004211;8.09e-10;10!UBERON:0009773;8.09e-10;10!UBERON:0001231;8.09e-10;10!UBERON:0004810;8.09e-10;10!UBERON:0006947;1.08e-08;3!UBERON:0004054;1.08e-08;3!UBERON:0003498;1.46e-08;3!UBERON:0005985;1.46e-08;3!UBERON:0001621;1.46e-08;3!UBERON:0006555;7.63e-07;15!UBERON:0004819;7.63e-07;15!UBERON:0001285;7.63e-07;15!UBERON:0007684;7.63e-07;15!UBERON:0005904;7.91e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0001301;2.34e-23;1!UBERON:0001529;2.19e-12;2!UBERON:0007204;2.19e-12;2!UBERON:0005396;3.42e-12;2!UBERON:0004211;8.09e-10;10!UBERON:0009773;8.09e-10;10!UBERON:0001231;8.09e-10;10!UBERON:0004810;8.09e-10;10!UBERON:0006947;1.08e-08;3!UBERON:0004054;1.08e-08;3!UBERON:0003498;1.46e-08;3!UBERON:0005985;1.46e-08;3!UBERON:0001621;1.46e-08;3!UBERON:0006555;7.63e-07;15!UBERON:0004819;7.63e-07;15!UBERON:0001285;7.63e-07;15!UBERON:0007684;7.63e-07;15!UBERON:0005904;7.91e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001301,1.34e-23,1;UBERON:0006555,4.14e-13,16;UBERON:0004819,4.14e-13,16;UBERON:0001529,1.85e-12,2;UBERON:0007204,1.85e-12,2;UBERON:0005396,3.24e-12,2;UBERON:0004810,8.84e-10,10;UBERON:0006947,8.96e-09,3;UBERON:0004054,8.96e-09,3;UBERON:0001621,1.51e-08,3;UBERON:0002113,2.59e-08,26;UBERON:0003918,2.59e-08,26;UBERON:0011143,2.59e-08,26;UBERON:0005095,2.59e-08,26;UBERON:0007687,2.59e-08,26;UBERON:0000489,4.58e-07,31;UBERON:0005904,6.87e-07,4;UBERON:0004211,8.09e-07,15;UBERON:0009773,8.09e-07,15;UBERON:0001231,8.09e-07,15;UBERON:0001285,8.09e-07,15;UBERON:0007684,8.09e-07,15;UBERON:0004208,8.09e-07,15;UBERON:0003914,9.59e-07,117 | |||
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| ||
|short_description=p@chr6:138014217..138014228,+ | |short_description=p@chr6:138014217..138014228,+ | ||
}} | }} |
Latest revision as of 19:59, 30 July 2015
Short description: | p@chr6:138014217..138014228, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:138014217..138014228, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 1.07e-23 | 1 |
seromucus secreting cell | 1.48e-12 | 2 |
smooth muscle cell of the brachiocephalic vasculature | 1.85e-12 | 2 |
smooth muscle cell of the carotid artery | 3.24e-12 | 2 |
kidney tubule cell | 8.84e-10 | 10 |
nephron tubule epithelial cell | 8.84e-10 | 10 |
smooth muscle cell of the coronary artery | 1.51e-08 | 3 |
epithelial cell of nephron | 8.09e-07 | 15 |
vascular associated smooth muscle cell | 8.42e-07 | 32 |
Ontology term | p-value | n |
---|---|---|
epididymis | 1.34e-23 | 1 |
excretory tube | 4.14e-13 | 16 |
kidney epithelium | 4.14e-13 | 16 |
brachiocephalic artery | 1.85e-12 | 2 |
brachiocephalic vasculature | 1.85e-12 | 2 |
carotid artery segment | 3.24e-12 | 2 |
nephron tubule epithelium | 8.84e-10 | 10 |
male genital duct | 8.96e-09 | 3 |
internal male genitalia | 8.96e-09 | 3 |
coronary artery | 1.51e-08 | 3 |
kidney | 2.59e-08 | 26 |
kidney mesenchyme | 2.59e-08 | 26 |
upper urinary tract | 2.59e-08 | 26 |
kidney rudiment | 2.59e-08 | 26 |
kidney field | 2.59e-08 | 26 |
cavitated compound organ | 4.58e-07 | 31 |
duct of male reproductive system | 6.87e-07 | 4 |
nephron epithelium | 8.09e-07 | 15 |
renal tubule | 8.09e-07 | 15 |
nephron tubule | 8.09e-07 | 15 |
nephron | 8.09e-07 | 15 |
uriniferous tubule | 8.09e-07 | 15 |
nephrogenic mesenchyme | 8.09e-07 | 15 |
epithelial tube | 9.59e-07 | 117 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.07e-23 | 1 |
clear cell adenocarcinoma | 2.90e-12 | 2 |