FFCP PHASE1:Hg19::chr1:218785863..218785866,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:218785863..218785866,+ | |||
|coexpression_cluster_id=C367 | |coexpression_cluster_id=C367 | ||
|description=CAGE_peak_at_chr1:218785863..218785866,+ | |description=CAGE_peak_at_chr1:218785863..218785866,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002195!6.96e-10!2;CL:0002571!6.96e-10!2 | |ontology_enrichment_celltype=CL:0002195!6.96e-10!2;CL:0002571!6.96e-10!2 | ||
|ontology_enrichment_celltype_v019=CL:0002149;8.72e-07;6!CL:0002255;8.72e-07;6 | |ontology_enrichment_celltype_v019=CL:0002149;8.72e-07;6!CL:0002255;8.72e-07;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002149,9.49e-07,6;CL:0002255,9.49e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.97e-34;1!UBERON:0003056;2.74e-12;3 | |ontology_enrichment_development_v019=UBERON:0005425;5.97e-34;1!UBERON:0003056;2.74e-12;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3111;2.58e-34;1!DOID:3603;2.58e-34;1!DOID:4929;5.48e-18;2!DOID:299;1.07e-12;25!DOID:3001;8.72e-07;6 | |ontology_enrichment_disease_v019=DOID:3111;2.58e-34;1!DOID:3603;2.58e-34;1!DOID:4929;5.48e-18;2!DOID:299;1.07e-12;25!DOID:3001;8.72e-07;6 | ||
|ontology_enrichment_disease_v019_2=DOID:3111,2.58e-34,1;DOID:3603,2.58e-34,1;DOID:4929,5.48e-18,2;DOID:299,1.13e-12,25;DOID:305,3.10e-08,106;DOID:3001,9.49e-07,6 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0004913;1.84e-34;1!UBERON:0003703;1.84e-34;1!UBERON:0001174;1.84e-34;1!UBERON:0004914;1.84e-34;1!UBERON:0000941;5.97e-34;1!UBERON:0001785;5.97e-34;1!UBERON:0002464;5.97e-34;1!UBERON:0004904;5.97e-34;1!UBERON:0001021;5.97e-34;1!UBERON:0002394;6.50e-34;4!UBERON:0003928;6.50e-34;4!UBERON:0002294;6.79e-20;7!UBERON:0001173;6.79e-20;7!UBERON:0003714;9.86e-18;2!UBERON:0005162;9.86e-18;2!UBERON:0000122;9.86e-18;2!UBERON:0000058;2.94e-14;10!UBERON:0002114;1.85e-12;2!UBERON:0002108;5.35e-08;4 | |ontology_enrichment_uberon_v019=UBERON:0004913;1.84e-34;1!UBERON:0003703;1.84e-34;1!UBERON:0001174;1.84e-34;1!UBERON:0004914;1.84e-34;1!UBERON:0000941;5.97e-34;1!UBERON:0001785;5.97e-34;1!UBERON:0002464;5.97e-34;1!UBERON:0004904;5.97e-34;1!UBERON:0001021;5.97e-34;1!UBERON:0002394;6.50e-34;4!UBERON:0003928;6.50e-34;4!UBERON:0002294;6.79e-20;7!UBERON:0001173;6.79e-20;7!UBERON:0003714;9.86e-18;2!UBERON:0005162;9.86e-18;2!UBERON:0000122;9.86e-18;2!UBERON:0000058;2.94e-14;10!UBERON:0002114;1.85e-12;2!UBERON:0002108;5.35e-08;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004913,1.84e-34,1;UBERON:0003703,1.84e-34,1;UBERON:0001174,1.84e-34,1;UBERON:0004914,1.84e-34,1;UBERON:0000941,5.05e-34,1;UBERON:0001785,5.05e-34,1;UBERON:0002464,5.05e-34,1;UBERON:0004904,5.05e-34,1;UBERON:0001021,5.05e-34,1;UBERON:0003902,5.05e-34,1;UBERON:0005425,5.05e-34,1;UBERON:0002394,4.34e-23,6;UBERON:0003928,4.34e-23,6;UBERON:0003714,9.07e-18,2;UBERON:0005162,9.07e-18,2;UBERON:0000122,9.07e-18,2;UBERON:0002294,9.04e-16,9;UBERON:0001173,9.04e-16,9;UBERON:0004912,9.04e-16,9;UBERON:0002114,1.85e-12,2;UBERON:0001781,1.44e-09,4;UBERON:0000058,5.35e-08,19;UBERON:0002108,5.35e-08,4;UBERON:0008835,4.94e-07,22;UBERON:0003894,4.94e-07,22;UBERON:0000966,8.48e-07,6;UBERON:0005388,8.48e-07,6;UBERON:0001802,8.48e-07,6;UBERON:0009854,9.13e-07,23 | |||
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|short_description=p@chr1:218785863..218785866,+ | |short_description=p@chr1:218785863..218785866,+ | ||
}} | }} |
Latest revision as of 03:59, 28 July 2015
Short description: | p@chr1:218785863..218785866, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:218785863..218785866, + |
Coexpression cluster: | C367_papillotubular_Macrophage_clear_pharyngeal_Renal_endometrial_tubular |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of uterus | 9.49e-07 | 6 |
stromal cell of endometrium | 9.49e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
hepatopancreatic ampulla | 1.84e-34 | 1 |
extrahepatic bile duct | 1.84e-34 | 1 |
common bile duct | 1.84e-34 | 1 |
duodenal papilla | 1.84e-34 | 1 |
cranial nerve II | 5.05e-34 | 1 |
cranial nerve | 5.05e-34 | 1 |
nerve trunk | 5.05e-34 | 1 |
nerve connecting eye with brain | 5.05e-34 | 1 |
nerve | 5.05e-34 | 1 |
retinal neural layer | 5.05e-34 | 1 |
presumptive neural retina | 5.05e-34 | 1 |
bile duct | 4.34e-23 | 6 |
digestive system duct | 4.34e-23 | 6 |
neural tissue | 9.07e-18 | 2 |
multi cell component structure | 9.07e-18 | 2 |
neuron projection bundle | 9.07e-18 | 2 |
biliary system | 9.04e-16 | 9 |
biliary tree | 9.04e-16 | 9 |
biliary bud | 9.04e-16 | 9 |
duodenum | 1.85e-12 | 2 |
layer of retina | 1.44e-09 | 4 |
duct | 5.35e-08 | 19 |
small intestine | 5.35e-08 | 4 |
hepatic diverticulum | 4.94e-07 | 22 |
liver primordium | 4.94e-07 | 22 |
retina | 8.48e-07 | 6 |
photoreceptor array | 8.48e-07 | 6 |
posterior segment of eyeball | 8.48e-07 | 6 |
digestive tract diverticulum | 9.13e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 2.58e-34 | 1 |
mucinous cystadenocarcinoma | 2.58e-34 | 1 |
tubular adenocarcinoma | 5.48e-18 | 2 |
adenocarcinoma | 1.13e-12 | 25 |
carcinoma | 3.10e-08 | 106 |
female reproductive endometrioid cancer | 9.49e-07 | 6 |