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Coexpression cluster:C51: Difference between revisions

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{{Coexpression_clusters
{
|full_id=C51_kidney_mesothelioma_renal_signet_gall_lung_pancreas
|

Latest revision as of 10:18, 17 September 2013


Full id: C51_kidney_mesothelioma_renal_signet_gall_lung_pancreas



Phase1 CAGE Peaks

Hg19::chr10:102490374..102490385,-p@chr10:102490374..102490385
-
Hg19::chr10:102507346..102507364,+p@chr10:102507346..102507364
+
Hg19::chr10:111840703..111840714,+p@chr10:111840703..111840714
+
Hg19::chr10:124901914..124901918,+p@chr10:124901914..124901918
+
Hg19::chr10:17171958..17171969,-p5@CUBN
Hg19::chr10:61469334..61469347,-p4@SLC16A9
Hg19::chr10:61469446..61469466,-p3@SLC16A9
Hg19::chr10:91316607..91316610,+p@chr10:91316607..91316610
+
Hg19::chr11:111794453..111794471,-p12@CRYAB
Hg19::chr11:117695415..117695426,-p3@FXYD2
Hg19::chr11:117695449..117695466,-p1@FXYD2
Hg19::chr11:117702952..117702958,-p@chr11:117702952..117702958
-
Hg19::chr11:117704588..117704614,+p1@ENST00000525260
Hg19::chr11:119243903..119243915,-p18@USP2
Hg19::chr11:128283040..128283050,+p@chr11:128283040..128283050
+
Hg19::chr11:128712362..128712365,-p3@KCNJ1
Hg19::chr11:128737163..128737196,-p1@KCNJ1
Hg19::chr11:128737259..128737273,-p2@KCNJ1
Hg19::chr11:130671415..130671417,+p@chr11:130671415..130671417
+
Hg19::chr11:15645649..15645654,+p@chr11:15645649..15645654
+
Hg19::chr11:26743000..26743011,-p4@SLC5A12
Hg19::chr11:26743336..26743349,-p3@SLC5A12
Hg19::chr11:26743598..26743612,-p2@SLC5A12
Hg19::chr11:26743807..26743816,-p8@SLC5A12
Hg19::chr11:26744932..26744936,-p7@SLC5A12
Hg19::chr11:27076817..27076822,+p12@BBOX1
Hg19::chr11:27076833..27076878,+p4@BBOX1
Hg19::chr11:27076889..27076934,+p1@BBOX1
Hg19::chr11:27076943..27076954,+p7@BBOX1
Hg19::chr11:27076967..27076977,+p8@BBOX1
Hg19::chr11:27077015..27077031,+p6@BBOX1
Hg19::chr11:35745818..35745864,+p16@TRIM44
Hg19::chr11:58710776..58710795,+p2@GLYATL1
Hg19::chr11:62752432..62752445,-p1@SLC22A6
Hg19::chr11:62783303..62783320,-p1@SLC22A8
Hg19::chr11:64323103..64323126,+p2@SLC22A11
Hg19::chr11:64323156..64323165,+p4@SLC22A11
Hg19::chr11:64358110..64358116,+p6@SLC22A12
Hg19::chr11:64358671..64358678,+p4@SLC22A12
Hg19::chr11:64358686..64358697,+p1@SLC22A12
Hg19::chr11:64358706..64358717,+p3@SLC22A12
Hg19::chr11:64358722..64358735,+p2@SLC22A12
Hg19::chr11:64388020..64388031,-p@chr11:64388020..64388031
-
Hg19::chr11:89223836..89223846,-p15@NOX4
Hg19::chr11:89223857..89223862,-p18@NOX4
Hg19::chr11:89223883..89223904,-p12@NOX4
Hg19::chr11:89223924..89223931,-p16@NOX4
Hg19::chr11:93479510..93479548,+p4@C11orf54
Hg19::chr11:93479588..93479622,+p3@C11orf54
Hg19::chr11:93480453..93480477,+p7@C11orf54
Hg19::chr11:93480519..93480528,+p8@C11orf54
Hg19::chr12:120189930..120189977,-p7@CIT
Hg19::chr12:132859346..132859392,+p1@BC035326
Hg19::chr12:26180670..26180688,+p@chr12:26180670..26180688
+
Hg19::chr12:40549963..40549974,+p2@ENST00000457989
Hg19::chr12:40549984..40549996,+p1@ENST00000457989
Hg19::chr12:50366760..50366775,+p1@AQP6
Hg19::chr12:50372082..50372086,-p@chr12:50372082..50372086
-
Hg19::chr12:76879841..76879844,-p34@OSBPL8
Hg19::chr12:76879852..76879867,-p26@OSBPL8
Hg19::chr12:80794449..80794467,+p@chr12:80794449..80794467
+
Hg19::chr12:93532861..93532884,-p1@ENST00000552451
Hg19::chr13:113236488..113236492,-p@chr13:113236488..113236492
-
Hg19::chr13:24184325..24184338,+p@chr13:24184325..24184338
+
Hg19::chr13:44684577..44684594,+p@chr13:44684577..44684594
+
Hg19::chr13:44684638..44684675,+p@chr13:44684638..44684675
+
Hg19::chr13:91807465..91807497,-p@chr13:91807465..91807497
-
Hg19::chr13:96085847..96085864,+p4@CLDN10
Hg19::chr13:96085879..96085890,+p7@CLDN10
Hg19::chr13:96085999..96086013,+p5@CLDN10
Hg19::chr13:96086031..96086040,+p11@CLDN10
Hg19::chr13:96086045..96086052,+p12@CLDN10
Hg19::chr13:96086056..96086073,+p3@CLDN10
Hg19::chr14:27244502..27244507,-p@chr14:27244502..27244507
-
Hg19::chr14:27291318..27291328,-p2@ENST00000549330
Hg19::chr14:27291337..27291349,-p1@ENST00000549330
Hg19::chr14:50863137..50863143,-p25@CDKL1
Hg19::chr14:64331122..64331134,+p13@SYNE2
Hg19::chr14:68113153..68113178,+p5@ARG2
Hg19::chr14:68113181..68113190,+p6@ARG2
Hg19::chr15:101256250..101256271,+p1@ENST00000559755
Hg19::chr15:101256294..101256308,+p2@ENST00000559755
Hg19::chr15:48498467..48498476,+p6@SLC12A1
Hg19::chr15:48498480..48498500,+p1@SLC12A1
Hg19::chr15:48595558..48595590,+p@chr15:48595558..48595590
+
Hg19::chr15:54025300..54025312,-p2@WDR72
Hg19::chr15:63040391..63040407,+p@chr15:63040391..63040407
+
Hg19::chr15:63045846..63045859,+p@chr15:63045846..63045859
+
Hg19::chr15:89647309..89647352,+p@chr15:89647309..89647352
+
Hg19::chr16:12155288..12155327,+p@chr16:12155288..12155327
+
Hg19::chr16:12155370..12155410,+p@chr16:12155370..12155410
+
Hg19::chr16:20352631..20352638,-p@chr16:20352631..20352638
-
Hg19::chr16:20357492..20357498,-p@chr16:20357492..20357498
-
Hg19::chr16:20359808..20359819,-p@chr16:20359808..20359819
-
Hg19::chr16:20360076..20360079,-p@chr16:20360076..20360079
-
Hg19::chr16:20360352..20360361,-p@chr16:20360352..20360361
-
Hg19::chr16:20362104..20362119,-p2@UMOD
Hg19::chr16:20362147..20362180,-p4@UMOD
Hg19::chr16:20362235..20362241,-p3@UMOD
Hg19::chr16:20364030..20364038,-p1@UMOD
Hg19::chr16:20364179..20364190,-p5@UMOD
Hg19::chr16:20367584..20367628,-p@chr16:20367584..20367628
-
Hg19::chr16:20498059..20498065,+p@chr16:20498059..20498065
+
Hg19::chr16:20548330..20548341,-p4@ACSM2B
Hg19::chr16:20548467..20548468,-p7@ACSM2B
Hg19::chr16:31494441..31494445,+p1@SLC5A2
Hg19::chr16:31495986..31495993,+p@chr16:31495986..31495993
+
Hg19::chr16:3705302..3705304,+p13@DNASE1
Hg19::chr16:524900..524933,+p2@RAB11FIP3
Hg19::chr16:56398230..56398234,-p14@AMFR
Hg19::chr16:56969284..56969295,+p@chr16:56969284..56969295
+
Hg19::chr16:57641044..57641058,-p@chr16:57641044..57641058
-
Hg19::chr16:66952742..66952774,-p1@CDH16
Hg19::chr16:66952781..66952794,-p2@CDH16
Hg19::chr16:67552269..67552277,+p@chr16:67552269..67552277
+
Hg19::chr16:69176013..69176024,+p@chr16:69176013..69176024
+
Hg19::chr16:69176025..69176037,+p@chr16:69176025..69176037
+
Hg19::chr16:69176038..69176058,+p@chr16:69176038..69176058
+
Hg19::chr17:10296588..10296625,-p@chr17:10296588..10296625
-
Hg19::chr17:18855470..18855503,+p1@SLC5A10
Hg19::chr17:19619886..19619902,-p1@SLC47A2
Hg19::chr17:19619917..19619955,-p2@SLC47A2
Hg19::chr17:27009704..27009726,+p@chr17:27009704..27009726
+
Hg19::chr17:37394021..37394027,+p@chr17:37394021..37394027
+
Hg19::chr17:42117846..42117861,-p@chr17:42117846..42117861
-
Hg19::chr17:42339431..42339436,-p3@SLC4A1
Hg19::chr17:55748749..55748760,+p@chr17:55748749..55748760
+
Hg19::chr17:55748783..55748788,+p@chr17:55748783..55748788
+
Hg19::chr17:55912115..55912121,-p@chr17:55912115..55912121
-
Hg19::chr17:68071458..68071481,+p1@KCNJ16
Hg19::chr17:72760430..72760444,+p@chr17:72760430..72760444
+
Hg19::chr17:72760445..72760456,+p@chr17:72760445..72760456
+
Hg19::chr17:73539232..73539236,+p@chr17:73539232..73539236
+
Hg19::chr18:20554944..20554975,+p@chr18:20554944..20554975
+
Hg19::chr18:20554982..20554991,+p@chr18:20554982..20554991
+
Hg19::chr18:20555003..20555016,+p@chr18:20555003..20555016
+
Hg19::chr18:55865012..55865033,+p@chr18:55865012..55865033
+
Hg19::chr18:59416009..59416017,-p@chr18:59416009..59416017
-
Hg19::chr18:69477752..69477762,+p@chr18:69477752..69477762
+
Hg19::chr19:10139428..10139432,-p@chr19:10139428..10139432
-
Hg19::chr19:33359534..33359557,-p2@SLC7A9
Hg19::chr19:5839707..5839718,-p3@FUT6
Hg19::chr19:5839721..5839738,-p4@FUT6
Hg19::chr19:735026..735036,+p@chr19:735026..735036
+
Hg19::chr1:110950572..110950585,-p4@HBXIP
Hg19::chr1:117021481..117021490,-p2@ENST00000443219
Hg19::chr1:117021512..117021519,-p4@ENST00000443219
Hg19::chr1:144013731..144013748,+p@chr1:144013731..144013748
+
Hg19::chr1:144013752..144013759,+p@chr1:144013752..144013759
+
Hg19::chr1:162640539..162640558,+p@chr1:162640539..162640558
+
Hg19::chr1:16348466..16348478,+p3@CLCNKA
p4@CLCNKB
Hg19::chr1:16348497..16348508,+p4@CLCNKA
Hg19::chr1:16348515..16348523,+p6@CLCNKA
Hg19::chr1:16348525..16348532,+p2@CLCNKA
Hg19::chr1:16370322..16370343,+p2@CLCNKB
Hg19::chr1:169073323..169073334,+p4@ENST00000415637
Hg19::chr1:169073366..169073375,+p2@ENST00000415637
Hg19::chr1:19426208..19426221,-p28@UBR4
Hg19::chr1:19426636..19426650,-p19@UBR4
Hg19::chr1:198509806..198509829,-p1@ATP6V1G3
Hg19::chr1:204700241..204700251,-p@chr1:204700241..204700251
-
Hg19::chr1:204839185..204839192,+p@chr1:204839185..204839192
+
Hg19::chr1:219730659..219730667,-p@chr1:219730659..219730667
-
Hg19::chr1:223065647..223065654,+p@chr1:223065647..223065654
+
Hg19::chr1:223065664..223065673,+p@chr1:223065664..223065673
+
Hg19::chr1:240116291..240116294,-p@chr1:240116291..240116294
-
Hg19::chr1:240116296..240116306,-p@chr1:240116296..240116306
-
Hg19::chr1:248608905..248608944,+p@chr1:248608905..248608944
+
Hg19::chr1:47651651..47651662,-p@chr1:47651651..47651662
-
Hg19::chr1:47651677..47651678,-p@chr1:47651677..47651678
-
Hg19::chr1:47653384..47653395,-p@chr1:47653384..47653395
-
Hg19::chr1:49692638..49692654,-p@chr1:49692638..49692654
-
Hg19::chr1:51796968..51796975,-p26@TTC39A
Hg19::chr1:52258122..52258125,-p@chr1:52258122..52258125
-
Hg19::chr1:55464578..55464587,+p2@BSND
Hg19::chr1:55464600..55464608,+p1@BSND
Hg19::chr1:6105937..6105963,+p8@KCNAB2
Hg19::chr1:71169337..71169351,+p@chr1:71169337..71169351
+
Hg19::chr1:8813880..8813888,-p67@RERE
Hg19::chr20:45280091..45280105,-p1@SLC13A3
Hg19::chr20:61878518..61878521,-p15@NKAIN4
Hg19::chr20:61878926..61878934,+p@chr20:61878926..61878934
+
Hg19::chr20:61879100..61879109,-p@chr20:61879100..61879109
-
Hg19::chr20:61879125..61879133,-p@chr20:61879125..61879133
-
Hg19::chr20:61880624..61880636,-p7@NKAIN4
Hg19::chr20:61880657..61880666,-p11@NKAIN4
Hg19::chr21:44035122..44035132,-p3@ENST00000419628
p3@uc002zbk.1
Hg19::chr21:44590304..44590313,+p6@CRYAA
Hg19::chr21:44590326..44590377,+p2@CRYAA
Hg19::chr21:44590382..44590411,+p3@CRYAA
Hg19::chr22:17702729..17702739,-p11@CECR1
Hg19::chr22:37776265..37776299,+p@chr22:37776265..37776299
+
Hg19::chr2:10220314..10220373,-p1@CYS1
Hg19::chr2:108905063..108905076,-p@chr2:108905063..108905076
-
Hg19::chr2:120187465..120187476,+p3@TMEM37
Hg19::chr2:135595869..135595875,+p5@ACMSD
Hg19::chr2:155345404..155345415,-p@chr2:155345404..155345415
-
Hg19::chr2:155345416..155345424,-p@chr2:155345416..155345424
-
Hg19::chr2:176994055..176994067,+p14@HOXD8
Hg19::chr2:180506550..180506567,-p@chr2:180506550..180506567
-
Hg19::chr2:209407391..209407403,+p@chr2:209407391..209407403
+
Hg19::chr2:209407420..209407435,+p@chr2:209407420..209407435
+
Hg19::chr2:209407437..209407456,+p@chr2:209407437..209407456
+
Hg19::chr2:234580502..234580512,+p2@UGT1A9
Hg19::chr2:234580525..234580551,+p1@UGT1A9
Hg19::chr2:234580566..234580577,+p3@UGT1A9
Hg19::chr2:234580789..234580822,+p4@UGT1A9
Hg19::chr2:34902876..34902885,+p3@uc002rpc.1
Hg19::chr2:34956793..34956797,+p@chr2:34956793..34956797
+
Hg19::chr2:44502597..44502609,+p2@SLC3A1
Hg19::chr2:44502612..44502625,+p1@SLC3A1
Hg19::chr2:44502630..44502641,+p3@SLC3A1
Hg19::chr2:44502711..44502719,+p4@SLC3A1
Hg19::chr2:46269304..46269314,+p@chr2:46269304..46269314
+
Hg19::chr2:492625..492636,-p2@ENST00000427398
Hg19::chr2:492655..492663,-p3@ENST00000427398
Hg19::chr2:492678..492702,-p1@ENST00000427398
Hg19::chr2:63826288..63826298,+p@chr2:63826288..63826298
+
Hg19::chr2:63826300..63826335,+p@chr2:63826300..63826335
+
Hg19::chr2:73307961..73307977,-p1@uc002siv.2
Hg19::chr2:73307978..73307989,-p2@uc002siv.2
Hg19::chr2:73869494..73869502,-p3@NAT8
Hg19::chr2:73869508..73869524,-p1@NAT8
Hg19::chr2:73869543..73869560,-p2@NAT8
Hg19::chr2:75796811..75796828,-p9@FAM176A
Hg19::chr2:84652572..84652586,-p@chr2:84652572..84652586
-
Hg19::chr2:84652594..84652608,-p@chr2:84652594..84652608
-
Hg19::chr2:84652610..84652621,-p@chr2:84652610..84652621
-
Hg19::chr2:84652652..84652661,-p@chr2:84652652..84652661
-
Hg19::chr2:84652689..84652703,-p@chr2:84652689..84652703
-
Hg19::chr2:99917659..99917663,-p1@LYG1
Hg19::chr3:121573579..121573620,+p@chr3:121573579..121573620
+
Hg19::chr3:401638..401656,+p@chr3:401638..401656
+
Hg19::chr3:46621205..46621207,+p@chr3:46621205..46621207
+
Hg19::chr3:46919195..46919202,+p16@PTH1R
Hg19::chr3:46919205..46919222,+p5@PTH1R
Hg19::chr3:46919225..46919228,+p19@PTH1R
Hg19::chr3:64546825..64546835,+p12@ADAMTS9-AS1
Hg19::chr3:64546907..64546918,+p9@ADAMTS9-AS1
Hg19::chr3:64547011..64547028,+p1@ADAMTS9-AS1
Hg19::chr3:64547091..64547100,+p7@ADAMTS9-AS1
Hg19::chr4:105828537..105828548,+p1@ENST00000515649
Hg19::chr4:108925759..108925771,+p8@HADH
Hg19::chr4:108925787..108925797,+p7@HADH
Hg19::chr4:111286729..111286743,+p15@ENPEP
Hg19::chr4:111286830..111286858,+p11@ENPEP
Hg19::chr4:114256960..114256969,+p@chr4:114256960..114256969
+
Hg19::chr4:114256979..114256992,+p@chr4:114256979..114256992
+
Hg19::chr4:114257049..114257054,+p90@ANK2
Hg19::chr4:114257114..114257133,+p20@ANK2
Hg19::chr4:114257151..114257163,+p28@ANK2
Hg19::chr4:114257175..114257184,+p31@ANK2
Hg19::chr4:11627248..11627289,+p1@ENST00000510095
Hg19::chr4:125681978..125681981,+p@chr4:125681978..125681981
+
Hg19::chr4:13992959..13992965,-p@chr4:13992959..13992965
-
Hg19::chr4:145483284..145483323,-p@chr4:145483284..145483323
-
Hg19::chr4:185909970..185910004,+p1@ENST00000505053
Hg19::chr4:21546272..21546306,-p6@KCNIP4
Hg19::chr4:21546307..21546320,-p15@KCNIP4
Hg19::chr4:22715706..22715721,+p4@GBA3
Hg19::chr4:54562065..54562080,+p1@ENST00000506950
Hg19::chr4:68442577..68442609,+p@chr4:68442577..68442609
+
Hg19::chr4:69813876..69813888,-p@chr4:69813876..69813888
-
Hg19::chr4:69922682..69922716,-p@chr4:69922682..69922716
-
Hg19::chr4:72204731..72204748,+p3@SLC4A4
Hg19::chr4:72204755..72204778,+p9@SLC4A4
Hg19::chr4:72204780..72204830,+p2@SLC4A4
Hg19::chr4:72204833..72204846,+p12@SLC4A4
Hg19::chr4:72205095..72205104,+p25@SLC4A4
Hg19::chr4:74278966..74278976,+p49@ALB
Hg19::chr4:86851227..86851248,+p21@ARHGAP24
Hg19::chr5:126988732..126988776,+p5@CTXN3
Hg19::chr5:131704946..131704951,+p7@SLC22A5
Hg19::chr5:135528831..135528855,-p1@LOC389332
Hg19::chr5:139739772..139739781,+p1@SLC4A9
Hg19::chr5:150408465..150408476,+p@chr5:150408465..150408476
+
Hg19::chr5:150727111..150727127,-p1@SLC36A2
Hg19::chr5:16682224..16682236,-p24@MYO10
Hg19::chr5:169626142..169626145,-p1@ENST00000506431
Hg19::chr5:32690960..32690981,+p@chr5:32690960..32690981
+
Hg19::chr5:35047946..35047955,-p3@AGXT2
Hg19::chr5:41794313..41794348,-p14@OXCT1
Hg19::chr5:5078433..5078439,-p1@ENST00000507950
Hg19::chr5:65985925..65985952,+p@chr5:65985925..65985952
+
Hg19::chr5:65985971..65985978,+p@chr5:65985971..65985978
+
Hg19::chr5:65985988..65986007,+p@chr5:65985988..65986007
+
Hg19::chr6:148663554..148663567,+p15@SASH1
Hg19::chr6:160679837..160679844,-p3@SLC22A2
Hg19::chr6:160679846..160679859,-p1@SLC22A2
Hg19::chr6:160679862..160679890,-p2@SLC22A2
Hg19::chr6:160679905..160679913,-p4@SLC22A2
Hg19::chr6:25830804..25830844,-p2@SLC17A1
Hg19::chr6:25832254..25832286,-p1@SLC17A1
Hg19::chr6:25874444..25874482,-p1@SLC17A3
Hg19::chr6:25874488..25874496,-p2@SLC17A3
Hg19::chr6:31496733..31496745,+p1@MCCD1
Hg19::chr6:31496748..31496757,+p2@MCCD1
Hg19::chr6:31496760..31496769,+p3@MCCD1
Hg19::chr6:31948210..31948243,+p6@STK19
Hg19::chr6:43263447..43263477,+p5@SLC22A7
Hg19::chr6:54172563..54172572,+p4@TINAG
Hg19::chr6:54172653..54172665,+p2@TINAG
Hg19::chr6:54173227..54173264,+p1@TINAG
Hg19::chr6:6711118..6711134,+p@chr6:6711118..6711134
+
Hg19::chr6:6711147..6711155,+p@chr6:6711147..6711155
+
Hg19::chr7:122840015..122840028,-p1@SLC13A1
Hg19::chr7:142630837..142630848,-p1@TRPV5
Hg19::chr7:151791037..151791060,+p5@GALNT11
Hg19::chr7:151791074..151791083,+p12@GALNT11
Hg19::chr7:151791095..151791107,+p6@GALNT11
Hg19::chr7:151791120..151791133,+p4@GALNT11
Hg19::chr7:24484743..24484762,-p@chr7:24484743..24484762
-
Hg19::chr7:24484768..24484782,-p@chr7:24484768..24484782
-
Hg19::chr7:30185406..30185413,+p21@C7orf41
Hg19::chr7:30185434..30185466,+p6@C7orf41
Hg19::chr7:30185483..30185493,+p14@C7orf41
Hg19::chr7:30185496..30185506,+p20@C7orf41
Hg19::chr7:43417422..43417435,+p16@HECW1
Hg19::chr7:53466177..53466218,-p@chr7:53466177..53466218
-
Hg19::chr7:53466339..53466356,-p@chr7:53466339..53466356
-
Hg19::chr7:53486539..53486548,-p@chr7:53486539..53486548
-
Hg19::chr7:53486592..53486602,-p@chr7:53486592..53486602
-
Hg19::chr7:88535666..88535671,+p@chr7:88535666..88535671
+
Hg19::chr8:107593198..107593207,+p17@OXR1
Hg19::chr8:119939125..119939155,-p@chr8:119939125..119939155
-
Hg19::chr8:135768745..135768760,+p@chr8:135768745..135768760
+
Hg19::chr8:21911117..21911122,+p45@EPB49
Hg19::chr8:38599861..38599872,+p@chr8:38599861..38599872
+
Hg19::chr8:38599878..38599898,+p@chr8:38599878..38599898
+
Hg19::chr8:38599902..38599914,+p@chr8:38599902..38599914
+
Hg19::chr8:87111059..87111072,+p2@ATP6V0D2
Hg19::chr8:87242593..87242610,-p1@SLC7A13
Hg19::chr9:104231607..104231618,+p1@ENST00000431507
Hg19::chr9:128295109..128295116,-p@chr9:128295109..128295116
-
Hg19::chr9:128300556..128300567,+p@chr9:128300556..128300567
+
Hg19::chr9:133973817..133973821,-p@chr9:133973817..133973821
-
Hg19::chr9:215744..215755,-p1@C9orf66
Hg19::chr9:2839068..2839076,-p@chr9:2839068..2839076
-
Hg19::chr9:71155795..71155800,-p1@C9orf71
Hg19::chr9:82604796..82604805,+p@chr9:82604796..82604805
+
Hg19::chr9:82604891..82604925,+p@chr9:82604891..82604925
+
Hg19::chrX:122964143..122964153,-p@chrX:122964143..122964153
-
Hg19::chrX:147453031..147453053,+p@chrX:147453031..147453053
+
Hg19::chrX:15682921..15682937,-p1@TMEM27
Hg19::chrX:15682969..15682997,-p2@TMEM27
Hg19::chrX:17024038..17024047,+p14@REPS2
Hg19::chrX:17024074..17024085,+p13@REPS2


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

p.valueFDRnGenesnPathwayName
0.0001489192871545570.0188531817537669330Butanoate metabolism (KEGG):00650
2.15700602326702e-060.000682692406364011427Collecting duct acid secretion (KEGG):04966
0.0001063775869924140.0168342531415496471Bile secretion (KEGG):04976
3.11285026468701e-231.97043421754688e-2024401Transmembrane transport of small molecules (Reactome):REACT_15518
5.10046000699888e-060.001076197061476767195Metabolism of amino acids and derivatives (Reactome):REACT_13



Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006810transport1.89719617973371e-19
GO:0051179localization3.93254738270869e-19
GO:0051234establishment of localization3.93254738270869e-19
GO:0022857transmembrane transporter activity1.43098723909109e-18
GO:0006811ion transport1.39136997934498e-15
GO:0022891substrate-specific transmembrane transporter activity1.89100379586395e-14
GO:0022892substrate-specific transporter activity8.03738440540318e-14
GO:0031420alkali metal ion binding1.01013960965506e-13
GO:0016021integral to membrane2.68046580461342e-13
GO:0031224intrinsic to membrane3.2327410395408e-13
GO:0044425membrane part4.07281717433875e-13
GO:0015075ion transmembrane transporter activity2.85379220766244e-12
GO:0015672monovalent inorganic cation transport2.85379220766244e-12
GO:0006812cation transport4.11975453053663e-12
GO:0031402sodium ion binding5.13616113380487e-12
GO:0006814sodium ion transport6.43531045011207e-11
GO:0030001metal ion transport1.30786989883719e-10
GO:0044459plasma membrane part1.85190694845496e-10
GO:0016020membrane1.85190694845496e-10
GO:0008509anion transmembrane transporter activity4.03661278807385e-10
GO:0015291secondary active transmembrane transporter activity5.20103592570194e-10
GO:0005886plasma membrane3.34008710852286e-09
GO:0022804active transmembrane transporter activity9.1595968211759e-09
GO:0043167ion binding2.65142772349874e-07
GO:0005887integral to plasma membrane3.52424109253111e-07
GO:0031226intrinsic to plasma membrane4.07130909570118e-07
GO:0015293symporter activity5.21595116983373e-07
GO:0044464cell part1.27511387025829e-06
GO:0006820anion transport5.69715338490617e-06
GO:0005903brush border1.05808749831209e-05
GO:0008324cation transmembrane transporter activity1.31588749889808e-05
GO:0043169cation binding2.32484834710577e-05
GO:0015103inorganic anion transmembrane transporter activity3.15671049247844e-05
GO:0046872metal ion binding3.15671049247844e-05
GO:0031526brush border membrane3.45096951005187e-05
GO:0022838substrate specific channel activity4.82877500825496e-05
GO:0030955potassium ion binding4.89228184140082e-05
GO:0022803passive transmembrane transporter activity5.04803506897739e-05
GO:0015267channel activity5.04803506897739e-05
GO:0031253cell projection membrane5.90860453867758e-05
GO:0007588excretion9.41706039515223e-05
GO:0005737cytoplasm0.00012926674808703
GO:0032387negative regulation of intracellular transport0.000130581945692104
GO:0044463cell projection part0.000138426034225713
GO:0005216ion channel activity0.000238729155266518
GO:0005624membrane fraction0.000239502793378283
GO:0022832voltage-gated channel activity0.000421895053557396
GO:0005244voltage-gated ion channel activity0.000421895053557396
GO:0015184L-cystine transmembrane transporter activity0.000671477741104918
GO:0000099sulfur amino acid transmembrane transporter activity0.000671477741104918
GO:0006813potassium ion transport0.00100475911406071
GO:0015380anion exchanger activity0.00114743274626435
GO:0005452inorganic anion exchanger activity0.00114743274626435
GO:0015106bicarbonate transmembrane transporter activity0.00114743274626435
GO:0015301anion:anion antiporter activity0.00124073130270833
GO:0015108chloride transmembrane transporter activity0.0013378660241174
GO:0015297antiporter activity0.00146501519497426
GO:0000267cell fraction0.00192889604716405
GO:0015849organic acid transport0.00192889604716405
GO:0005342organic acid transmembrane transporter activity0.00192889604716405
GO:0015296anion:cation symporter activity0.0020337718654762
GO:0015294solute:cation symporter activity0.0032104410204545
GO:0008514organic anion transmembrane transporter activity0.0038938818649058
GO:0022836gated channel activity0.00494353702542133
GO:0015114phosphate transmembrane transporter activity0.00746998368263885
GO:0015171amino acid transmembrane transporter activity0.00757174694582507
GO:0015698inorganic anion transport0.00766565248542183
GO:0016324apical plasma membrane0.0091944362799982
GO:0051180vitamin transport0.00926356720720928
GO:0006865amino acid transport0.00972659221552472
GO:0005261cation channel activity0.00991757399722957
GO:0016998cell wall catabolic process0.0126001088003563
GO:0010382cell wall metabolic process0.0136082325506414
GO:0007047cell wall organization and biogenesis0.0136082325506414
GO:0005739mitochondrion0.0141096244591854
GO:0005254chloride channel activity0.0141967554264155
GO:0005212structural constituent of eye lens0.0144446117554799
GO:0015837amine transport0.014836119494306
GO:0042995cell projection0.0148972277812976
GO:0016323basolateral plasma membrane0.0149752398052477
GO:0045229external encapsulating structure organization and biogenesis0.0150973130621619
GO:0045177apical part of cell0.0151182338322654
GO:0006821chloride transport0.0153250566806487
GO:0005509calcium ion binding0.0153250566806487
GO:0032386regulation of intracellular transport0.0186090828564014
GO:0046873metal ion transmembrane transporter activity0.0196627119797523
GO:0005242inward rectifier potassium channel activity0.0196627119797523
GO:0046943carboxylic acid transmembrane transporter activity0.0196627119797523
GO:0046942carboxylic acid transport0.0196627119797523
GO:0005253anion channel activity0.0196627119797523
GO:0005267potassium channel activity0.0196627119797523
GO:0048611embryonic ectodermal gut development0.0196627119797523
GO:0048613embryonic ectodermal gut morphogenesis0.0196627119797523
GO:0046874quinolinate metabolic process0.0196627119797523
GO:0005362low-affinity glucose:sodium symporter activity0.0196627119797523
GO:0004530deoxyribonuclease I activity0.0196627119797523
GO:0001760aminocarboxymuconate-semialdehyde decarboxylase activity0.0196627119797523
GO:0046950ketone body metabolic process0.0196627119797523
GO:0015747urate transport0.0196627119797523
GO:0047305(R)-3-amino-2-methylpropionate-pyruvate transaminase activity0.0196627119797523
GO:0051657maintenance of organelle localization0.0196627119797523
GO:0004230glutamyl aminopeptidase activity0.0196627119797523
GO:0051659maintenance of mitochondrion localization0.0196627119797523
GO:0015143urate transmembrane transporter activity0.0196627119797523
GO:0007443Malpighian tubule morphogenesis0.0196627119797523
GO:0008267poly-glutamine tract binding0.0196627119797523
GO:0048619embryonic hindgut morphogenesis0.0196627119797523
GO:0051051negative regulation of transport0.0223754260837359
GO:0006805xenobiotic metabolic process0.0223754260837359
GO:0043066negative regulation of apoptosis0.0228738368156062
GO:0015179L-amino acid transmembrane transporter activity0.0234044345150818
GO:0043069negative regulation of programmed cell death0.023550953896321
GO:0046903secretion0.0253474760918795
GO:0009410response to xenobiotic stimulus0.0256984774904907
GO:0044444cytoplasmic part0.0273494201605538
GO:0005247voltage-gated chloride channel activity0.0324182986052347
GO:0019752carboxylic acid metabolic process0.0324182986052347
GO:0006855multidrug transport0.0324182986052347
GO:00082603-oxoacid CoA-transferase activity0.0324182986052347
GO:0000101sulfur amino acid transport0.0324182986052347
GO:0048558embryonic gut morphogenesis0.0324182986052347
GO:0019826oxygen sensor activity0.0324182986052347
GO:0016139glycoside catabolic process0.0324182986052347
GO:0008511sodium:potassium:chloride symporter activity0.0324182986052347
GO:0048557embryonic digestive tract morphogenesis0.0324182986052347
GO:0043072negative regulation of non-apoptotic programmed cell death0.0324182986052347
GO:0005412glucose:sodium symporter activity0.0324182986052347
GO:0016137glycoside metabolic process0.0324182986052347
GO:0008336gamma-butyrobetaine dioxygenase activity0.0324182986052347
GO:0015811L-cystine transport0.0324182986052347
GO:0006082organic acid metabolic process0.0324182986052347
GO:0044248cellular catabolic process0.0346107058593573
GO:0022844voltage-gated anion channel activity0.034998389307259
GO:0030145manganese ion binding0.0377228017189514
GO:0009152purine ribonucleotide biosynthetic process0.0377228017189514
GO:0052185modification of structure of other organism during symbiotic interaction0.0377228017189514
GO:0051883killing of cells in other organism during symbiotic interaction0.0377228017189514
GO:0052331hemolysis by organism of red blood cells in other organism during symbiotic interaction0.0377228017189514
GO:0015879carnitine transport0.0377228017189514
GO:0031232extrinsic to external side of plasma membrane0.0377228017189514
GO:0008510sodium:bicarbonate symporter activity0.0377228017189514
GO:0019836hemolysis by symbiont of host red blood cells0.0377228017189514
GO:0015226carnitine transporter activity0.0377228017189514
GO:0051801cytolysis of cells in other organism during symbiotic interaction0.0377228017189514
GO:0001907killing by symbiont of host cells0.0377228017189514
GO:0031640killing of cells of another organism0.0377228017189514
GO:0001897cytolysis by symbiont of host cells0.0377228017189514
GO:0016244non-apoptotic programmed cell death0.0377228017189514
GO:00170603-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity0.0377228017189514
GO:0047961glycine N-acyltransferase activity0.0377228017189514
GO:0004053arginase activity0.0377228017189514
GO:0051818disruption of cells of other organism during symbiotic interaction0.0377228017189514
GO:0008453alanine-glyoxylate transaminase activity0.0377228017189514
GO:0015347sodium-independent organic anion transmembrane transporter activity0.0377228017189514
GO:0044004disruption by symbiont of host cells0.0377228017189514
GO:0051817modification of morphology or physiology of other organism during symbiotic interaction0.0377228017189514
GO:0051715cytolysis of cells of another organism0.0377228017189514
GO:0045329carnitine biosynthetic process0.0377228017189514
GO:0052332modification by organism of cell membrane in other organism during symbiotic interaction0.0377228017189514
GO:0043070regulation of non-apoptotic programmed cell death0.0377228017189514
GO:0052111modification by symbiont of host structure0.0377228017189514
GO:0052025modification by symbiont of host cell membrane0.0377228017189514
GO:0016174NAD(P)H oxidase activity0.0377228017189514
GO:0052043modification by symbiont of host cellular component0.0377228017189514
GO:0008422beta-glucosidase activity0.0377228017189514
GO:0044003modification by symbiont of host morphology or physiology0.0377228017189514
GO:0052188modification of cellular component in other organism during symbiotic interaction0.0377228017189514
GO:0009150purine ribonucleotide metabolic process0.0398921369785227
GO:0009260ribonucleotide biosynthetic process0.0398921369785227
GO:0006164purine nucleotide biosynthetic process0.0408152818066184
GO:0005249voltage-gated potassium channel activity0.0446167966825047
GO:0019825oxygen binding0.0449167010148656
GO:0009259ribonucleotide metabolic process0.0449167010148656
GO:0006163purine nucleotide metabolic process0.0449167010148656
GO:0006916anti-apoptosis0.0449167010148656
GO:0051354negative regulation of oxidoreductase activity0.0449167010148656
GO:0035085cilium axoneme0.0449167010148656
GO:0048567ectodermal gut morphogenesis0.0449167010148656
GO:0007439ectodermal gut development0.0449167010148656
GO:0015643toxin binding0.0449167010148656
GO:0015802basic amino acid transport0.0449167010148656
GO:0009437carnitine metabolic process0.0449167010148656
GO:0008410CoA-transferase activity0.0449167010148656
GO:0007442hindgut morphogenesis0.0449167010148656
GO:0051001negative regulation of nitric-oxide synthase activity0.0449167010148656
GO:0048523negative regulation of cellular process0.0449167010148656
GO:0031404chloride ion binding0.0463689246940225
GO:0043168anion binding0.0463689246940225



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
kidney3.90e-0726
kidney mesenchyme3.90e-0726
upper urinary tract3.90e-0726
kidney rudiment3.90e-0726
kidney field3.90e-0726


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.00939958
MA0006.12.51533e-05
MA0007.10.0817144
MA0009.10.184542
MA0014.10
MA0017.13.89651
MA0019.10.0588715
MA0024.10.00258695
MA0025.10.425159
MA0027.10.921633
MA0028.13.0055e-08
MA0029.10.164092
MA0030.10.746949
MA0031.10.857676
MA0038.10.265003
MA0040.11.35148
MA0041.10.486171
MA0042.10.0907079
MA0043.10.316145
MA0046.145.1684
MA0048.10.0838171
MA0050.10.324729
MA0051.10.342532
MA0052.10.0443882
MA0055.10.0248564
MA0056.10
MA0057.10.000177652
MA0058.10.00161092
MA0059.10.00152834
MA0060.15.06293e-05
MA0061.10.0311181
MA0063.10
MA0066.10.752385
MA0067.10.0339468
MA0068.19.58418e-06
MA0069.11.80746
MA0070.11.09671
MA0071.11.126
MA0072.10.02759
MA0073.10
MA0074.10.175868
MA0076.18.87593e-05
MA0077.10.0656784
MA0078.10.274318
MA0081.10.175741
MA0083.10.0410404
MA0084.10.305436
MA0087.10.396772
MA0088.10.0109254
MA0089.10
MA0090.10.308671
MA0091.10.234574
MA0092.11.69554
MA0093.10.000910877
MA0095.10
MA0098.10
MA0100.10.0615713
MA0101.10.0847221
MA0103.10.340632
MA0105.10.000230058
MA0106.11.72988
MA0107.10.0194935
MA0108.20.643395
MA0109.10
MA0111.10.173759
MA0113.10.796291
MA0114.14.03837
MA0115.10.424437
MA0116.10.0151903
MA0117.10.0545249
MA0119.10.124617
MA0122.10.46398
MA0124.10.875183
MA0125.10.607112
MA0130.10
MA0131.11.29078e-05
MA0132.10
MA0133.10
MA0135.15.64397
MA0136.10.288237
MA0139.10.000269639
MA0140.10.0652559
MA0141.12.48345
MA0142.10.693685
MA0143.11.187
MA0144.10.60809
MA0145.10.146036
MA0146.11.15049e-12
MA0147.11.80069e-05
MA0148.11.69867
MA0149.10.130661
MA0062.21.23934e-10
MA0035.20.101024
MA0039.20
MA0138.20.0376501
MA0002.21.30593
MA0137.20.938005
MA0104.22.45509e-07
MA0047.21.59821
MA0112.20.00617507
MA0065.21.31403
MA0150.11.20107
MA0151.10
MA0152.11.80403
MA0153.120.3341
MA0154.10.0393915
MA0155.10.00729441
MA0156.10.0505009
MA0157.11.40216
MA0158.10
MA0159.11.24722
MA0160.12.14781
MA0161.10
MA0162.10
MA0163.11.2083e-13
MA0164.10.301029
MA0080.20.0553913
MA0018.20.00628005
MA0099.20.236129
MA0079.20
MA0102.20.346878
MA0258.10.0461505
MA0259.17.8122e-05
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
BRF2#5529039.29027880168890.004325258139853590.0205320501280928
FOXA2#3170271.916491415913430.001099391672558680.00767868433694618
HNF4A#3172291.933246168661840.0006330572424258770.00519656255141996
HNF4G#3174221.822983560754550.005530328333837270.0250371477245494
MAFF#23764132.109797217202560.01005579129794720.0376597263013699



Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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