FFCP PHASE1:Hg19::chr1:45103935..45103960,+: Difference between revisions
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|id=chr1:45103935..45103960,+
|short_description=p19@RNF220
|description=CAGE_peak_19_at_RNF220_5end
|association_with_transcript=-7bp_to_ENST00000474394_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=55182 | |EntrezGene=55182 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25552 | |HGNC=25552 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-7bp_to_ENST00000474394_5end | |||
|cluster_id=chr1:45103935..45103960,+ | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_19_at_RNF220_5end | |||
|id=chr1:45103935..45103960,+ | |||
|ontology_enrichment_celltype=CL:0000764!2.56e-29!2;CL:0000765!2.56e-29!2;CL:0000050!2.56e-29!2;CL:0000038!2.56e-29!2;CL:0000558!2.56e-29!2;CL:0000547!2.56e-29!2;CL:0000549!2.56e-29!2;CL:0000550!2.56e-29!2;CL:0000552!2.56e-29!2;CL:0000242!2.48e-08!2 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009117;5.90e-17;10!UBERON:0005564;5.90e-17;10!UBERON:0003056;1.83e-14;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001905!1.92e-29!2;UBERON:0002757!1.92e-29!2;UBERON:0010134!1.92e-29!2;UBERON:0002784!1.92e-29!2;UBERON:0005408!1.92e-29!2;UBERON:0001899!1.92e-29!2;UBERON:0003296!2.96e-15!4;UBERON:0010133!2.96e-15!4;UBERON:0001894!4.04e-09!7;UBERON:0006222!4.04e-09!7;UBERON:0000473!3.04e-08!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;6.64e-21;8!UBERON:0001905;6.96e-21;2!UBERON:0002757;6.96e-21;2!UBERON:0010134;6.96e-21;2!UBERON:0005408;6.96e-21;2!UBERON:0001899;6.96e-21;2!UBERON:0003135;1.62e-15;11!UBERON:0003296;3.79e-11;4!UBERON:0010133;3.79e-11;4!UBERON:0002784;3.79e-11;4!UBERON:0000966;3.22e-09;5!UBERON:0005388;3.22e-09;5!UBERON:0001802;3.22e-09;5!UBERON:0000991;1.27e-08;21!UBERON:0003101;2.82e-08;22!UBERON:0000079;2.82e-08;22!UBERON:0001894;6.39e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,6.64e-21,8;UBERON:0001905,6.96e-21,2;UBERON:0002757,6.96e-21,2;UBERON:0010134,6.96e-21,2;UBERON:0005408,6.96e-21,2;UBERON:0001899,6.96e-21,2;UBERON:0003135,1.62e-15,11;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0002784,3.79e-11,4;UBERON:0000991,1.27e-08,21;UBERON:0009196,1.27e-08,21;UBERON:0009117,1.27e-08,21;UBERON:0005564,1.27e-08,21;UBERON:0004176,2.82e-08,22;UBERON:0003101,2.82e-08,22;UBERON:0000079,2.82e-08,22;UBERON:0000966,6.78e-08,6;UBERON:0005388,6.78e-08,6;UBERON:0001802,6.78e-08,6;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7 | |||
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|short_description=p19@RNF220 | |||
}} | }} |
Latest revision as of 06:25, 18 September 2015
Short description: | p19@RNF220 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_RNF220_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | -7bp_to_ENST00000474394_5end |
EntrezGene: | RNF220 |
HGNC: | 25552 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
testis | 6.64e-21 | 8 |
pineal body | 6.96e-21 | 2 |
regional part of epithalamus | 6.96e-21 | 2 |
secretory circumventricular organ | 6.96e-21 | 2 |
circumventricular organ | 6.96e-21 | 2 |
epithalamus | 6.96e-21 | 2 |
male reproductive organ | 1.62e-15 | 11 |
gland of diencephalon | 3.79e-11 | 4 |
neuroendocrine gland | 3.79e-11 | 4 |
regional part of diencephalon | 3.79e-11 | 4 |
gonad | 1.27e-08 | 21 |
indifferent external genitalia | 1.27e-08 | 21 |
indifferent gonad | 1.27e-08 | 21 |
gonad primordium | 1.27e-08 | 21 |
external genitalia | 2.82e-08 | 22 |
male organism | 2.82e-08 | 22 |
male reproductive system | 2.82e-08 | 22 |
retina | 6.78e-08 | 6 |
photoreceptor array | 6.78e-08 | 6 |
posterior segment of eyeball | 6.78e-08 | 6 |
diencephalon | 6.39e-07 | 7 |
future diencephalon | 6.39e-07 | 7 |