FFCP PHASE1:Hg19::chr1:43205891..43205930,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:43205891..43205930,-
|short_description=p1@CLDN19
|description=CAGE_peak_1_at_CLDN19_5end
|association_with_transcript=0bp_to_ENST00000296387,ENST000005397...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=149461 | |EntrezGene=149461 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2040 | |HGNC=2040 | ||
|TSSclassifier=strong | |||
|UniProt=Q8N6F1,F5H5P9,B7Z5I2 | |UniProt=Q8N6F1,F5H5P9,B7Z5I2 | ||
|association_with_transcript=0bp_to_ENST00000296387,ENST00000539749,NM_001123395,NM_001185117,NM_148960,uc001cht.1,uc001chu.2,uc010ojv.1_5end | |||
|cluster_id=chr1:43205891..43205930,- | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_1_at_CLDN19_5end | |||
|id=chr1:43205891..43205930,- | |||
|ontology_enrichment_celltype=CL:0002322!6.62e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;6.91e-12;5!CL:0002541;1.50e-08;3!CL:0002586;5.62e-08;3!CL:1000507;9.19e-07;10!CL:1000494;9.19e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,7.32e-12,5;CL:0002541,1.50e-08,3;CL:0002586,5.07e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0006241;4.36e-08;3!UBERON:0003057;4.36e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.02e-14!115;UBERON:0003075!5.87e-12!86;UBERON:0007284!5.87e-12!86;UBERON:0002346!6.20e-11!90;UBERON:0005743!5.34e-10!86;UBERON:0000064!1.55e-09!219;UBERON:0000489!4.42e-09!32;UBERON:0000481!1.28e-08!347;UBERON:0000020!2.70e-08!23;UBERON:0000966!3.03e-08!5;UBERON:0005388!3.03e-08!5;UBERON:0001802!3.03e-08!5;UBERON:0000073!3.90e-08!94;UBERON:0001016!3.90e-08!94;UBERON:0004121!5.52e-08!169;UBERON:0002298!8.53e-08!8;UBERON:0001032!8.69e-08!24;UBERON:0004456!8.69e-08!24;UBERON:0001017!1.56e-07!82;UBERON:0000924!1.71e-07!173;UBERON:0006601!1.71e-07!173;UBERON:0000153!2.16e-07!129;UBERON:0007811!2.16e-07!129;UBERON:0000063!3.45e-07!97;UBERON:0003076!3.88e-07!15;UBERON:0003057!3.88e-07!15;UBERON:0000062!3.99e-07!511;UBERON:0000970!4.35e-07!20;UBERON:0001049!5.10e-07!57;UBERON:0005068!5.10e-07!57;UBERON:0006241!5.10e-07!57;UBERON:0007135!5.10e-07!57;UBERON:0000922!6.61e-07!612;UBERON:0003056!8.74e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;2.31e-12;5!UBERON:0005388;2.31e-12;5!UBERON:0001802;2.31e-12;5!UBERON:0000922;3.74e-11;49!UBERON:0003124;1.50e-08;3!UBERON:0000920;1.50e-08;3!UBERON:0000489;2.95e-08;29!UBERON:0002240;4.36e-08;3!UBERON:0005174;4.36e-08;3!UBERON:0001137;4.36e-08;3!UBERON:0001781;5.62e-08;3!UBERON:0001782;5.62e-08;3!UBERON:0000020;6.05e-08;23!UBERON:0001896;1.13e-07;3!UBERON:0005290;1.13e-07;3!UBERON:0001032;1.60e-07;24!UBERON:0004456;1.60e-07;24!UBERON:0004211;9.19e-07;10!UBERON:0009773;9.19e-07;10!UBERON:0001231;9.19e-07;10!UBERON:0004810;9.19e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000489,2.44e-10,31;UBERON:0000966,3.00e-10,6;UBERON:0005388,3.00e-10,6;UBERON:0001802,3.00e-10,6;UBERON:0000920,1.50e-08,3;UBERON:0002240,4.42e-08,3;UBERON:0005174,4.42e-08,3;UBERON:0001137,4.42e-08,3;UBERON:0001782,5.07e-08,3;UBERON:0005424,5.07e-08,3;UBERON:0001896,1.07e-07,3;UBERON:0005290,1.07e-07,3;UBERON:0010096,1.07e-07,3;UBERON:0000020,1.85e-07,24;UBERON:0001032,1.85e-07,24;UBERON:0004456,1.85e-07,24;UBERON:0007023,4.45e-07,114;UBERON:0011216,9.00e-07,223 | |||
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| ||
|short_description=p1@CLDN19 | |||
}} | }} |
Latest revision as of 03:33, 18 September 2015
Short description: | p1@CLDN19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CLDN19_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000296387, ENST00000539749, NM_001123395, NM_001185117, NM_148960, uc001cht.1, uc001chu.2, uc010ojv.1_5end |
EntrezGene: | CLDN19 |
HGNC: | 2040 |
UniProt: | Q8N6F1F5H5P9B7Z5I2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 7.32e-12 | 5 |
chorionic membrane mesenchymal stem cell | 1.50e-08 | 3 |
retinal pigment epithelial cell | 5.07e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cavitated compound organ | 2.44e-10 | 31 |
retina | 3.00e-10 | 6 |
photoreceptor array | 3.00e-10 | 6 |
posterior segment of eyeball | 3.00e-10 | 6 |
egg chorion | 1.50e-08 | 3 |
spinal cord | 4.42e-08 | 3 |
dorsal region element | 4.42e-08 | 3 |
dorsum | 4.42e-08 | 3 |
pigmented layer of retina | 5.07e-08 | 3 |
presumptive retinal pigmented epithelium | 5.07e-08 | 3 |
medulla oblongata | 1.07e-07 | 3 |
myelencephalon | 1.07e-07 | 3 |
future myelencephalon | 1.07e-07 | 3 |
sense organ | 1.85e-07 | 24 |
sensory system | 1.85e-07 | 24 |
entire sense organ system | 1.85e-07 | 24 |
adult organism | 4.45e-07 | 114 |
organ system subdivision | 9.00e-07 | 223 |