FFCP PHASE1:Hg19::chr16:2521470..2521487,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4917 | |EntrezGene=4917 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8030 | |HGNC=8030 | ||
|TSSclassifier=strong | |||
|UniProt=O00634 | |UniProt=O00634 | ||
|association_with_transcript=-12bp_to_ENST00000293973,NM_006181,uc002cqj.2_5end | |association_with_transcript=-12bp_to_ENST00000293973,NM_006181,uc002cqj.2_5end | ||
|cluster_id=chr16:2521470..2521487,+ | |||
|coexpression_cluster_id=C76 | |coexpression_cluster_id=C76 | ||
|description=CAGE_peak_2_at_NTN3_5end | |description=CAGE_peak_2_at_NTN3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000123;5.00e-45;2!CL:0000242;5.00e-45;2!CL:0000312;1.04e-18;5!CL:0000240;9.04e-16;6!CL:0000311;9.04e-16;6!CL:0000079;9.04e-16;6!CL:0000237;9.04e-16;6!CL:0002535;1.48e-12;2!CL:0000362;7.58e-11;9!CL:0002159;2.68e-07;14 | |ontology_enrichment_celltype_v019=CL:0000123;5.00e-45;2!CL:0000242;5.00e-45;2!CL:0000312;1.04e-18;5!CL:0000240;9.04e-16;6!CL:0000311;9.04e-16;6!CL:0000079;9.04e-16;6!CL:0000237;9.04e-16;6!CL:0002535;1.48e-12;2!CL:0000362;7.58e-11;9!CL:0002159;2.68e-07;14 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,5.00e-45,2;CL:0000312,1.04e-18,5;CL:0000240,9.04e-16,6;CL:0000311,9.04e-16,6;CL:0000079,9.04e-16,6;CL:0000237,9.04e-16,6;CL:0000036,9.04e-16,6;CL:0000357,9.04e-16,6;CL:0000114,9.04e-16,6;CL:0002535,1.48e-12,2;CL:0000362,7.58e-11,9;CL:0002159,2.68e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000357;9.04e-16;6!CL:0000114;9.04e-16;6 | |ontology_enrichment_development_v019=CL:0000357;9.04e-16;6!CL:0000114;9.04e-16;6 | ||
|ontology_enrichment_disease=DOID:171!1.80e-07!10 | |ontology_enrichment_disease=DOID:171!1.80e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:3193;3.06e-12;2!DOID:962;3.06e-12;2!DOID:1192;1.35e-08;3 | |ontology_enrichment_disease_v019=DOID:3193;3.06e-12;2!DOID:962;3.06e-12;2!DOID:1192;1.35e-08;3 | ||
|ontology_enrichment_disease_v019_2=DOID:3193,3.62e-12,2;DOID:962,3.62e-12,2;DOID:1192,1.51e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0000013!1.99e-07!5;UBERON:0002410!1.99e-07!5;UBERON:0001871!2.41e-07!7;UBERON:0001869!3.37e-07!32;UBERON:0000073!5.04e-07!94;UBERON:0001016!5.04e-07!94 | |ontology_enrichment_uberon=UBERON:0000013!1.99e-07!5;UBERON:0002410!1.99e-07!5;UBERON:0001871!2.41e-07!7;UBERON:0001869!3.37e-07!32;UBERON:0000073!5.04e-07!94;UBERON:0001016!5.04e-07!94 | ||
|ontology_enrichment_uberon_v019=UBERON:0006955;1.48e-12;2!UBERON:0004801;1.48e-12;2!UBERON:0003714;3.06e-12;2!UBERON:0001003;7.20e-07;15!UBERON:0007376;7.20e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0006955;1.48e-12;2!UBERON:0004801;1.48e-12;2!UBERON:0003714;3.06e-12;2!UBERON:0001003;7.20e-07;15!UBERON:0007376;7.20e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,1.48e-12,2;UBERON:0004801,1.48e-12,2;UBERON:0003714,3.62e-12,2;UBERON:0001003,7.20e-07,15;UBERON:0007376,7.20e-07,15;UBERON:0007383,7.20e-07,15 | |||
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| ||
|short_description=p2@NTN3 | |short_description=p2@NTN3 | ||
}} | }} |
Latest revision as of 19:46, 15 September 2015
Short description: | p2@NTN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NTN3_5end |
Coexpression cluster: | C76_argyrophil_gastrointestinal_temporal_duodenum_neuroblastoma_merkel_smallcell |
Association with transcript: | -12bp_to_ENST00000293973, NM_006181, uc002cqj.2_5end |
EntrezGene: | NTN3 |
HGNC: | 8030 |
UniProt: | O00634 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 5.00e-45 | 2 |
keratinocyte | 1.04e-18 | 5 |
stratified squamous epithelial cell | 9.04e-16 | 6 |
keratin accumulating cell | 9.04e-16 | 6 |
stratified epithelial cell | 9.04e-16 | 6 |
keratinizing barrier epithelial cell | 9.04e-16 | 6 |
epithelial fate stem cell | 9.04e-16 | 6 |
stratified epithelial stem cell | 9.04e-16 | 6 |
surface ectodermal cell | 9.04e-16 | 6 |
epithelial cell of cervix | 1.48e-12 | 2 |
epidermal cell | 7.58e-11 | 9 |
general ecto-epithelial cell | 2.68e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 1.48e-12 | 2 |
cervix epithelium | 1.48e-12 | 2 |
neural tissue | 3.62e-12 | 2 |
skin epidermis | 7.20e-07 | 15 |
outer epithelium | 7.20e-07 | 15 |
enveloping layer of ectoderm | 7.20e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
peripheral nerve sheath neoplasm | 3.62e-12 | 2 |
neurofibroma | 3.62e-12 | 2 |
peripheral nervous system neoplasm | 1.51e-08 | 3 |