FFCP PHASE1:Hg19::chr16:46722530..46722554,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55737 | |EntrezGene=55737 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=13487 | |HGNC=13487 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=470bp_to_uc002eee.2_5end | |association_with_transcript=470bp_to_uc002eee.2_5end | ||
|cluster_id=chr16:46722530..46722554,- | |||
|coexpression_cluster_id=C25 | |coexpression_cluster_id=C25 | ||
|description=CAGE_peak_6_at_VPS35_5end | |description=CAGE_peak_6_at_VPS35_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.37e-29;1!UBERON:0003056;9.90e-11;3 | |ontology_enrichment_development_v019=UBERON:0005425;2.37e-29;1!UBERON:0003056;9.90e-11;3 | ||
|ontology_enrichment_disease=DOID:305!1.48e-08!106;DOID:162!1.42e-07!235;DOID:0050687!3.88e-07!143;DOID:14566!4.52e-07!239 | |ontology_enrichment_disease=DOID:305!1.48e-08!106;DOID:162!1.42e-07!235;DOID:0050687!3.88e-07!143;DOID:14566!4.52e-07!239 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.37e-29;1!UBERON:0001785;2.37e-29;1!UBERON:0002464;2.37e-29;1!UBERON:0004904;2.37e-29;1!UBERON:0001021;2.37e-29;1!UBERON:0002108;8.09e-24;4!UBERON:0003714;2.05e-15;2!UBERON:0005162;2.05e-15;2!UBERON:0000122;2.05e-15;2!UBERON:0000160;5.93e-15;17!UBERON:0005409;7.25e-12;22!UBERON:0004921;6.74e-08;33 | |ontology_enrichment_uberon_v019=UBERON:0000941;2.37e-29;1!UBERON:0001785;2.37e-29;1!UBERON:0002464;2.37e-29;1!UBERON:0004904;2.37e-29;1!UBERON:0001021;2.37e-29;1!UBERON:0002108;8.09e-24;4!UBERON:0003714;2.05e-15;2!UBERON:0005162;2.05e-15;2!UBERON:0000122;2.05e-15;2!UBERON:0000160;5.93e-15;17!UBERON:0005409;7.25e-12;22!UBERON:0004921;6.74e-08;33 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.78e-29,1;UBERON:0001785,1.78e-29,1;UBERON:0002464,1.78e-29,1;UBERON:0004904,1.78e-29,1;UBERON:0001021,1.78e-29,1;UBERON:0003902,1.78e-29,1;UBERON:0005425,1.78e-29,1;UBERON:0002108,8.09e-24,4;UBERON:0003714,1.78e-15,2;UBERON:0005162,1.78e-15,2;UBERON:0000122,1.78e-15,2;UBERON:0000160,5.93e-15,17;UBERON:0005409,1.40e-10,25;UBERON:0001781,2.11e-08,4 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0.309868802321207,0.142169232487422,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0.22465726229299,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,1.32171328579026,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0.270803863765016,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0.144846518960824,0,0,0.378139268656271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0,0.57978255948989,0,0,0.243947412259191,0,0,0,0.252320850875628,0,0,0,0,0,0.721879481669586,0.118306800039844,0,0.241011029883482,0.220587945464788,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.277765335475589,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0,0.179117045405697,0,0.383382679165211,0,0,0.207328115540772,0,0.12624243342638,0,0.381988425558278,0,0,0,0,0.285826432630578,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0.246381468041427,0,0.116210378459959,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0.145016693914229,0,0.267096106940212,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.371606350251437,0.577076851905779,0.0711418433484141,0,0,0,0,0,0,1.14117339516596,0,0,0.169291777801603,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0.146508179271894,0.36408156524854,0.111443384277478,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0.738508832766417,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0.174919999992391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0.113942055847001,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0.163232808159148,0.282706142867882,0.216388639742091,0,1.41532103205343,0,0.296521128680622,0,0.104421949505455,0,0,0.234264445725339,0,0,0,0,0,0,0,0.300646838828985,0,0,0.330991955875499,0,0,0,0.138674673013139,0,0.0979923974143777,0.34823682632161,0,0,0.290268993867255,0.292357268344742,0.492692742319255,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0.114536596165916,0,0,0.248505071130865,0.235694034616795,0.135904206073614,0,0.101998217636322,0.288950589901519,0,0,0,0,0.262887354279314,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0.0787831823072236,0.247247575143499,0.0674035438541849,0.0984274815147488,0,0,0,0.160753148465019,0.550157746388935,0,0,0,0,0,0,0,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0.487170393523584,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0.449803112163605,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0.76872455576384,0,0,0,0.194860308839388,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0,0,0,0.318004350653419,1.49837315502381,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,1.42769420259154,0,0.11796972334774,0,0.231051332300676,0,0,0.198916222116275,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0.455324382702595,0.0887023701626388,0.345701962667338,0.171488009437418,0,0,0.118193840883968,0.111231401892069,0,0,0.280272163313789,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0.223710863595585,0,0.731507549893617,0,0,0,0,0,0.397901550322736,0,0,0.439762066981716,0,4.63044948647668,5.02686989159102,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0.199882311849858,0,0,0.160482733378337,0,0,0,0.157771562193185,0,0,0.5290268405154,0.371995018166751,0,0,0.126166424835079,0,0,0.101988829741982,0.26721740526556,0.0918948995348449,0,0.303114792872958,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0.201273793591026,0 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|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,0,0,0,0,0,0,0.309868802321207,0.142169232487422,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0.22465726229299,0.150176892841506,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,1.32171328579026,0,0,0,0,0.205601498999509,0,0,0,0,0.111410456885174,0,0,0.270803863765016,0.128091319725675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289648807765598,0,0,0,0,0,0.144846518960824,0,0,0.378139268656271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0.33472061276467,0.402829317109147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0.140450806702248,0,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0.103052529238439,0,0.18611685633159,0,0.0974370051611986,0,0,0,0,0,0,0.57978255948989,0,0,0.243947412259191,0,0,0,0.252320850875628,0,0,0,0,0,0.721879481669586,0.118306800039844,0,0.241011029883482,0.220587945464788,0,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0.245976877086227,0,0,0,0,0.277765335475589,0,0,0,0,0.117408694235822,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0,0.179117045405697,0,0.383382679165211,0,0,0.207328115540772,0,0.12624243342638,0,0.381988425558278,0,0,0,0,0.285826432630578,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0.205476322550383,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.315404830067869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248107807818777,0,0.280660094433074,0.128139149255701,0,0,0,0,0,0.246381468041427,0,0.116210378459959,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0.145016693914229,0,0.267096106940212,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.371606350251437,0.577076851905779,0.0711418433484141,0,0,0,0,0,0,1.14117339516596,0,0,0.169291777801603,0,0,0,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0.146508179271894,0.36408156524854,0.111443384277478,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0.738508832766417,0,0.0898683511473268,0.179021174675609,0,0,0,0,0,0,0,0,0.174919999992391,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0.113942055847001,0,0.0897576444097721,0,0,0.0915975934018623,0,0,0.156980256395025,0,0,0,0,0,0.158936578980379,0,0.163232808159148,0.282706142867882,0.216388639742091,0,1.41532103205343,0,0.296521128680622,0,0.104421949505455,0,0,0.234264445725339,0,0,0,0,0,0,0,0.300646838828985,0,0,0.330991955875499,0,0,0,0.138674673013139,0,0.0979923974143777,0.34823682632161,0,0,0.290268993867255,0.292357268344742,0.492692742319255,0.0969890164884194,0,0,0,0,0,0.195551382734803,0,0,0,0,0.114536596165916,0,0,0.248505071130865,0.235694034616795,0.135904206073614,0,0.101998217636322,0.288950589901519,0,0,0,0,0.262887354279314,0,0,0,0,0,0.223171457441873,0.0671834724867263,0,0,0.0787831823072236,0.247247575143499,0.0674035438541849,0.0984274815147488,0,0,0,0.160753148465019,0.550157746388935,0,0,0,0,0,0,0,0,0,0,0,0,0.5085370753095,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0.487170393523584,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0.449803112163605,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0.192914038270915,0.168942440653073,0.76872455576384,0,0,0,0.194860308839388,0,0,0,0,0,0,0.106691729694141,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,0,0,0,0.318004350653419,1.49837315502381,0,0,0,0.128458450192919,0,0,0,0,0.0691572524642179,0,1.42769420259154,0,0.11796972334774,0,0.231051332300676,0,0,0.198916222116275,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0.455324382702595,0.0887023701626388,0.345701962667338,0.171488009437418,0,0,0.118193840883968,0.111231401892069,0,0,0.280272163313789,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0.223710863595585,0,0.731507549893617,0,0,0,0,0,0.397901550322736,0,0,0.439762066981716,0,4.63044948647668,5.02686989159102,0,0,0,0,0,0,0,0.0939839179798536,0.0644578879735772,0.199882311849858,0,0,0.160482733378337,0,0,0,0.157771562193185,0,0,0.5290268405154,0.371995018166751,0,0,0.126166424835079,0,0,0.101988829741982,0.26721740526556,0.0918948995348449,0,0.303114792872958,0,0,0,0,0,0,0.0620747142958579,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0.0898252021065869,0,0,0,0,0.201273793591026,0 | ||
|short_description=p6@VPS35 | |short_description=p6@VPS35 | ||
}} | }} |
Latest revision as of 17:19, 16 September 2015
Short description: | p6@VPS35 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_VPS35_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 470bp_to_uc002eee.2_5end |
EntrezGene: | VPS35 |
HGNC: | 13487 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.78e-29 | 1 |
cranial nerve | 1.78e-29 | 1 |
nerve trunk | 1.78e-29 | 1 |
nerve connecting eye with brain | 1.78e-29 | 1 |
nerve | 1.78e-29 | 1 |
retinal neural layer | 1.78e-29 | 1 |
presumptive neural retina | 1.78e-29 | 1 |
small intestine | 8.09e-24 | 4 |
neural tissue | 1.78e-15 | 2 |
multi cell component structure | 1.78e-15 | 2 |
neuron projection bundle | 1.78e-15 | 2 |
intestine | 5.93e-15 | 17 |
gastrointestinal system | 1.40e-10 | 25 |
layer of retina | 2.11e-08 | 4 |