FFCP PHASE1:Hg19::chr1:246887640..246887723,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:246887640..246887723,+
|short_description=p1@SCCPDH
|description=CAGE_peak_1_at_SCCPDH_5end
|association_with_transcript=262bp_to_ENST00000366509,NM_016002...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=51097 | |EntrezGene=51097 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24275 | |HGNC=24275 | ||
|TSSclassifier=strong | |||
|UniProt=E9PEA8,Q8NBX0 | |UniProt=E9PEA8,Q8NBX0 | ||
|association_with_transcript=262bp_to_ENST00000366509,NM_016002,uc001ibr.2_5end | |||
|cluster_id=chr1:246887640..246887723,+ | |||
|description=CAGE_peak_1_at_SCCPDH_5end | |||
|id=chr1:246887640..246887723,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!7.60e-10!31;DOID:1240!6.43e-09!39;DOID:14566!7.83e-09!239;DOID:162!2.02e-08!235 | |||
|ontology_enrichment_disease_v019=DOID:8692;1.12e-09;31!DOID:1240;1.30e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,7.60e-10,31;DOID:1240,6.43e-09,39;DOID:14566,7.79e-09,239;DOID:162,2.01e-08,235 | |||
|ontology_enrichment_uberon=UBERON:0000073!7.48e-20!94;UBERON:0001016!7.48e-20!94;UBERON:0001017!1.70e-17!82;UBERON:0005743!1.84e-17!86;UBERON:0000955!1.33e-16!69;UBERON:0006238!1.33e-16!69;UBERON:0001049!1.37e-16!57;UBERON:0005068!1.37e-16!57;UBERON:0006241!1.37e-16!57;UBERON:0007135!1.37e-16!57;UBERON:0002616!1.40e-14!59;UBERON:0002780!2.07e-13!41;UBERON:0001890!2.07e-13!41;UBERON:0006240!2.07e-13!41;UBERON:0003080!2.96e-13!42;UBERON:0002346!6.72e-13!90;UBERON:0003075!8.29e-12!86;UBERON:0007284!8.29e-12!86;UBERON:0002020!9.24e-11!34;UBERON:0003528!9.24e-11!34;UBERON:0001893!1.38e-10!34;UBERON:0002791!2.83e-10!33;UBERON:0001869!1.33e-09!32;UBERON:0003056!2.78e-09!61;UBERON:0007023!8.39e-08!115;UBERON:0000033!9.45e-08!123;UBERON:0000956!1.77e-07!25;UBERON:0000203!1.77e-07!25;UBERON:0002619!3.25e-07!22;UBERON:0000924!3.62e-07!173;UBERON:0006601!3.62e-07!173;UBERON:0000153!6.97e-07!129;UBERON:0007811!6.97e-07!129;UBERON:0001950!8.70e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;7.12e-10;41!UBERON:0001890;7.12e-10;41!UBERON:0003528;2.22e-09;34!UBERON:0002020;2.22e-09;34!UBERON:0000073;4.36e-09;53!UBERON:0002616;4.36e-09;53!UBERON:0001893;4.36e-09;34!UBERON:0002791;5.34e-09;32!UBERON:0001869;6.71e-09;32!UBERON:0001017;2.03e-08;75!UBERON:0001016;2.87e-08;83!UBERON:0000955;4.54e-08;68!UBERON:0000956;1.89e-07;25!UBERON:0000203;1.89e-07;25!UBERON:0002619;3.41e-07;22!UBERON:0001950;9.32e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.69e-20,89;UBERON:0001017,1.41e-17,81;UBERON:0001049,9.98e-17,56;UBERON:0005068,9.98e-17,56;UBERON:0006241,9.98e-17,56;UBERON:0007135,9.98e-17,56;UBERON:0000955,1.06e-16,68;UBERON:0006238,1.06e-16,68;UBERON:0000073,4.31e-15,53;UBERON:0002616,4.31e-15,53;UBERON:0002346,4.18e-14,86;UBERON:0011216,6.39e-14,223;UBERON:0002780,2.07e-13,41;UBERON:0001890,2.07e-13,41;UBERON:0003080,2.07e-13,41;UBERON:0006240,2.07e-13,41;UBERON:0003075,5.67e-13,82;UBERON:0007284,5.67e-13,82;UBERON:0003528,9.24e-11,34;UBERON:0002020,9.24e-11,34;UBERON:0001893,1.38e-10,34;UBERON:0003056,8.24e-10,61;UBERON:0002791,8.83e-10,32;UBERON:0001869,1.33e-09,32;UBERON:0010314,1.67e-09,132;UBERON:0007023,1.07e-07,114;UBERON:0000956,1.77e-07,25;UBERON:0000203,1.77e-07,25;UBERON:0004121,2.38e-07,171;UBERON:0000924,2.38e-07,171;UBERON:0006601,2.38e-07,171;UBERON:0002619,3.25e-07,22;UBERON:0001950,8.70e-07,20 | |||
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| ||
|short_description=p1@SCCPDH | |||
}} | }} |
Latest revision as of 23:04, 16 September 2015
Short description: | p1@SCCPDH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCCPDH_5end |
Coexpression cluster: | NA |
Association with transcript: | 262bp_to_ENST00000366509, NM_016002, uc001ibr.2_5end |
EntrezGene: | SCCPDH |
HGNC: | 24275 |
UniProt: | E9PEA8Q8NBX0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 5.69e-20 | 89 |
central nervous system | 1.41e-17 | 81 |
neural tube | 9.98e-17 | 56 |
neural rod | 9.98e-17 | 56 |
future spinal cord | 9.98e-17 | 56 |
neural keel | 9.98e-17 | 56 |
brain | 1.06e-16 | 68 |
future brain | 1.06e-16 | 68 |
regional part of nervous system | 4.31e-15 | 53 |
regional part of brain | 4.31e-15 | 53 |
neurectoderm | 4.18e-14 | 86 |
organ system subdivision | 6.39e-14 | 223 |
regional part of forebrain | 2.07e-13 | 41 |
forebrain | 2.07e-13 | 41 |
anterior neural tube | 2.07e-13 | 41 |
future forebrain | 2.07e-13 | 41 |
neural plate | 5.67e-13 | 82 |
presumptive neural plate | 5.67e-13 | 82 |
brain grey matter | 9.24e-11 | 34 |
gray matter | 9.24e-11 | 34 |
telencephalon | 1.38e-10 | 34 |
pre-chordal neural plate | 8.24e-10 | 61 |
regional part of telencephalon | 8.83e-10 | 32 |
cerebral hemisphere | 1.33e-09 | 32 |
structure with developmental contribution from neural crest | 1.67e-09 | 132 |
adult organism | 1.07e-07 | 114 |
cerebral cortex | 1.77e-07 | 25 |
pallium | 1.77e-07 | 25 |
ectoderm-derived structure | 2.38e-07 | 171 |
ectoderm | 2.38e-07 | 171 |
presumptive ectoderm | 2.38e-07 | 171 |
regional part of cerebral cortex | 3.25e-07 | 22 |
neocortex | 8.70e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 7.60e-10 | 31 |
leukemia | 6.43e-09 | 39 |
disease of cellular proliferation | 7.79e-09 | 239 |
cancer | 2.01e-08 | 235 |