FFCP PHASE1:Hg19::chr12:57623477..57623531,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6472 | |EntrezGene=6472 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10852 | |HGNC=10852 | ||
|TSSclassifier=strong | |||
|UniProt=G3V3C6,G3V2Y4,G3V4W5,G3V2D2,Q8N1A5 | |UniProt=G3V3C6,G3V2Y4,G3V4W5,G3V2D2,Q8N1A5 | ||
|association_with_transcript=0bp_to_ENST00000553324,ENST00000553950,ENST00000554467,ENST00000555563,ENST00000555634,ENST00000556689,ENST00000557269,ENST00000557487_5end | |association_with_transcript=0bp_to_ENST00000553324,ENST00000553950,ENST00000554467,ENST00000555563,ENST00000555634,ENST00000556689,ENST00000557269,ENST00000557487_5end | ||
|cluster_id=chr12:57623477..57623531,+ | |||
|description=CAGE_peak_1_at_SHMT2_5end | |description=CAGE_peak_1_at_SHMT2_5end | ||
|id=chr12:57623477..57623531,+ | |id=chr12:57623477..57623531,+ | ||
|ontology_enrichment_celltype=CL:0000548!1.09e-44!679;CL:0000004!1.09e-44!679;CL:0000255!1.09e-44!679;CL:0000012!8.65e-44!682;CL:0000003!4.01e-32!722;CL:0000144!6.65e-27!625;CL:0000066!3.93e-24!254;CL:0002371!1.55e-19!591;CL:0000063!4.51e-18!578;CL:0002321!2.94e-17!248;CL:0000220!9.84e-17!246;CL:0000055!3.27e-12!180;CL:1000449!2.69e-07!16;CL:0000183!8.15e-07!59;CL:0000222!8.89e-07!119 | |ontology_enrichment_celltype=CL:0000548!1.09e-44!679;CL:0000004!1.09e-44!679;CL:0000255!1.09e-44!679;CL:0000012!8.65e-44!682;CL:0000003!4.01e-32!722;CL:0000144!6.65e-27!625;CL:0000066!3.93e-24!254;CL:0002371!1.55e-19!591;CL:0000063!4.51e-18!578;CL:0002321!2.94e-17!248;CL:0000220!9.84e-17!246;CL:0000055!3.27e-12!180;CL:1000449!2.69e-07!16;CL:0000183!8.15e-07!59;CL:0000222!8.89e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:1000449;5.95e-07;15 | |ontology_enrichment_celltype_v019=CL:1000449;5.95e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.69e-24,253;CL:0002321,1.40e-17,250;CL:0000222,5.18e-07,121;CL:1000449,5.95e-07,15 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:162!2.88e-18!235;DOID:14566!3.43e-18!239;DOID:0050687!2.90e-09!143;DOID:0050686!2.35e-08!137;DOID:305!6.37e-08!106 | |ontology_enrichment_disease=DOID:162!2.88e-18!235;DOID:14566!3.43e-18!239;DOID:0050687!2.90e-09!143;DOID:0050686!2.35e-08!137;DOID:305!6.37e-08!106 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:162,2.88e-18,235;DOID:14566,3.43e-18,239;DOID:0050687,2.90e-09,143;DOID:0050686,2.35e-08,137;DOID:305,6.37e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0003104!4.94e-08!238;UBERON:0009142!4.94e-08!238;UBERON:0004211!2.69e-07!16;UBERON:0001285!2.69e-07!16;UBERON:0007684!2.69e-07!16;UBERON:0003220!2.69e-07!16;UBERON:0004208!2.69e-07!16 | |ontology_enrichment_uberon=UBERON:0003104!4.94e-08!238;UBERON:0009142!4.94e-08!238;UBERON:0004211!2.69e-07!16;UBERON:0001285!2.69e-07!16;UBERON:0007684!2.69e-07!16;UBERON:0003220!2.69e-07!16;UBERON:0004208!2.69e-07!16 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;5.95e-07;15!UBERON:0004819;5.95e-07;15!UBERON:0001285;5.95e-07;15!UBERON:0007684;5.95e-07;15 | |ontology_enrichment_uberon_v019=UBERON:0006555;5.95e-07;15!UBERON:0004819;5.95e-07;15!UBERON:0001285;5.95e-07;15!UBERON:0007684;5.95e-07;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000490,2.31e-07,148;UBERON:0002100,5.50e-07,199;UBERON:0004211,5.95e-07,15;UBERON:0009773,5.95e-07,15;UBERON:0001231,5.95e-07,15;UBERON:0001285,5.95e-07,15;UBERON:0007684,5.95e-07,15;UBERON:0004208,5.95e-07,15 | |||
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| ||
|short_description=p1@SHMT2 | |short_description=p1@SHMT2 | ||
}} | }} |
Latest revision as of 13:33, 19 September 2015
Short description: | p1@SHMT2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHMT2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000553324, ENST00000553950, ENST00000554467, ENST00000555563, ENST00000555634, ENST00000556689, ENST00000557269, ENST00000557487_5end |
EntrezGene: | SHMT2 |
HGNC: | 10852 |
UniProt: | G3V3C6G3V2Y4G3V4W5G3V2D2Q8N1A5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.69e-24 | 253 |
embryonic cell | 1.40e-17 | 250 |
mesodermal cell | 5.18e-07 | 121 |
epithelial cell of nephron | 5.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
unilaminar epithelium | 2.31e-07 | 148 |
trunk | 5.50e-07 | 199 |
nephron epithelium | 5.95e-07 | 15 |
renal tubule | 5.95e-07 | 15 |
nephron tubule | 5.95e-07 | 15 |
nephron | 5.95e-07 | 15 |
uriniferous tubule | 5.95e-07 | 15 |
nephrogenic mesenchyme | 5.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.88e-18 | 235 |
disease of cellular proliferation | 3.43e-18 | 239 |
cell type cancer | 2.90e-09 | 143 |
organ system cancer | 2.35e-08 | 137 |
carcinoma | 6.37e-08 | 106 |