FFCP PHASE1:Hg19::chr18:29598576..29598585,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54941 | |EntrezGene=54941 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21150 | |HGNC=21150 | ||
|TSSclassifier=strong | |||
|UniProt=Q96EQ8 | |UniProt=Q96EQ8 | ||
|association_with_transcript=131bp_to_NM_017831,uc002kxf.1_5end | |association_with_transcript=131bp_to_NM_017831,uc002kxf.1_5end | ||
|cluster_id=chr18:29598576..29598585,+ | |||
|coexpression_cluster_id=C49 | |coexpression_cluster_id=C49 | ||
|description=CAGE_peak_6_at_RNF125_5end | |description=CAGE_peak_6_at_RNF125_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002322;9.23e-30;5!CL:0000039;2.79e-21;7!CL:0000586;2.79e-21;7!CL:0000097;1.21e-10;5!CL:0002321;8.88e-10;15!CL:0000540;1.13e-09;6!CL:0000404;1.13e-09;6 | |ontology_enrichment_celltype_v019=CL:0002322;9.23e-30;5!CL:0000039;2.79e-21;7!CL:0000586;2.79e-21;7!CL:0000097;1.21e-10;5!CL:0002321;8.88e-10;15!CL:0000540;1.13e-09;6!CL:0000404;1.13e-09;6 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,8.49e-30,5;CL:0000039,2.80e-21,7;CL:0000586,2.80e-21,7;CL:0000097,1.21e-10,5;CL:0002028,1.21e-10,5;CL:0000540,1.18e-09,6;CL:0000031,1.18e-09,6;CL:0000404,1.18e-09,6;CL:0000047,2.42e-07,8 | |||
|ontology_enrichment_development_v019=UBERON:0009117;6.07e-10;10!UBERON:0005564;6.07e-10;10!CL:0000031;1.13e-09;6 | |ontology_enrichment_development_v019=UBERON:0009117;6.07e-10;10!UBERON:0005564;6.07e-10;10!CL:0000031;1.13e-09;6 | ||
|ontology_enrichment_disease=DOID:305!1.16e-10!106;DOID:14566!8.71e-10!239;DOID:0050687!3.79e-09!143;DOID:162!3.80e-09!235 | |ontology_enrichment_disease=DOID:305!1.16e-10!106;DOID:14566!8.71e-10!239;DOID:0050687!3.79e-09!143;DOID:162!3.80e-09!235 | ||
|ontology_enrichment_disease_v019=DOID:3095;2.84e-09;22!DOID:2994;2.84e-09;22!DOID:1799;6.48e-07;1!DOID:10165;6.48e-07;1!DOID:3347;6.48e-07;1!DOID:1798;6.48e-07;1 | |ontology_enrichment_disease_v019=DOID:3095;2.84e-09;22!DOID:2994;2.84e-09;22!DOID:1799;6.48e-07;1!DOID:10165;6.48e-07;1!DOID:3347;6.48e-07;1!DOID:1798;6.48e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:3095,2.89e-09,22;DOID:2994,2.89e-09,22;DOID:3347,6.12e-07,1;DOID:1799,9.73e-07,1;DOID:10165,9.73e-07,1;DOID:1798,9.73e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.39e-07!129;UBERON:0004185!1.39e-07!129;UBERON:0008947!4.76e-07!38;UBERON:0003258!4.76e-07!38 | |ontology_enrichment_uberon=UBERON:0004921!1.39e-07!129;UBERON:0004185!1.39e-07!129;UBERON:0008947!4.76e-07!38;UBERON:0003258!4.76e-07!38 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.08e-12;8!UBERON:0003135;4.81e-09;11!UBERON:0000922;7.25e-08;49 | |ontology_enrichment_uberon_v019=UBERON:0000473;2.08e-12;8!UBERON:0003135;4.81e-09;11!UBERON:0000922;7.25e-08;49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.08e-12,8;UBERON:0003135,4.81e-09,11 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0.218441372130172,0,0,0,0,0,0,0,0,0.408001382488506,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764546456250458,0,0.560508562981536,0,0.590129310341499,0.393010762749165,0,0,0,0,1.94826728407911,0.222820913770347,0.294605907474837,0,0,0.384273959177026,0.130059347559878,0.328875809207352,0.276350017785848,0,0,0,0,0.113309342697566,0,0.34362744548263,0.253019692019503,0,0,0,0,0,0,0,0,0,0.267440195783507,0.289648807765598,0,0,0,0,0,0,0,0,0.189069634328136,0,0.175669571386252,0,0.364295288292542,0.370784442784429,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0.151357427644931,0,0,0.936480230490962,0,0,0.23486899728753,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0,4.51302712679503,3.5783037446801,5.46111531486736,3.21349270547648,3.28017106138317,4.37972830890996,0,0,0,0,0,0.473227200159376,0.168584690078102,0.482022059766964,0.220587945464788,0,0.237270619111097,0.269662616320329,0,0.769494313892781,0,0,0,0,0,0.982827216677626,0,0.441463099414651,0,0,0.109750285408626,0,0.100528972411631,0.185176890317059,0,0,1.44331342025273,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.581267877027924,0,0,1.40877494421162,1.4512968087854,0.720599767084807,1.13618190083742,0,0,0,0,0,0,0.285826432630578,0.224262168690721,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0.784596007954691,0.197030760201927,0.646882724578552,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0,0,0.206768026122887,0,0.106727557803444,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0.116210378459959,0.120859449591622,0.200506470303285,0.184161977871793,0,0,0,0,0.15403067420883,0,1.46139224653261,0.105551628892876,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0.256450125116389,0,0,0,0.0915694648183434,0,0,0,0,0.096670718292122,0,0,0.275673144969061,0,0.435050081742686,0.170453254832202,0.0890320356467374,0.165284915360978,0.192190067365106,0.255225424989168,0,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0.316379424718726,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0.379473173765715,0,0.192444225451024,0.670302275535787,0,0.0941438007767792,0.43050537267123,0,0,0,0,0,0,0,0,0,0,0,0.747768497892312,0,0,0.185803175125719,0,0.0711418433484141,0.159426272728822,0.199579371432817,0.766021480529467,0,0,0,0,0.156679895773023,0,1.69291777801603,0,0,0.425846237690326,0,0,0.223676107892416,0,0,0,1.23087398947712,0,0,0,0.561421621224659,0.586032717087576,0,1.78309414843965,0.284136146806413,0,0,0,0,0.140669416410513,0.445234820091624,0.16480387422676,0,0,0.552567831062295,0,0,0.123084805461069,0,0.269605053441981,0,0.511572370226872,0.197286811273867,0,0,0,0,0,0,0,0,0.341380344856499,0.254253650292766,0,0,0.874813840149763,0,0,0,0,0,0,0,0.32681539055697,0,0,0.113942055847001,0,0.448788222048861,1.3037684630641,0,0.0915975934018623,0,0,0,0,0,0,0,0.569261198172555,0,0.210998064528027,0,0.141353071433941,1.29833183845255,0,0.353830258013357,1.22206028986725,0,0.123563938946503,0,0,0,0.234264445725339,0.182454789215666,0,0.728341138602278,0.394584402849391,0,0,0.126373159256976,0.450970258243478,0.72581733978073,0.664653872707185,0.330991955875499,0.313932918407225,0,0,0,0.520679215005393,0.0979923974143777,0.261177619741208,0,0,1.25783230675811,0.950161122120412,0.739039113478883,0.0969890164884194,0.176512253383001,0,0.685209623233754,0.397429223405979,0,0,0,0.426905989478705,0.39961921916426,1.00863292007874,0.229073192331831,0.171594997861965,1.00838358591705,0.124252535565433,0.235694034616795,0,0.209205692624666,0,0,0.600420288709789,0,0,0,0.788662062837943,0,0.229160424011684,0,0,0,0,0.134366944973453,0,0,0,0.0824158583811665,0,0,0,0,0,4.66184130548556,5.22649859069488,4.15440338029185,0.2249738915515,0.77380195455795,0,0,0.157611414598396,0,0.211200673038813,0,0.383830394638891,0,0.662091970365432,0,0.542999601753713,0,0,1.19730191562487,0.082092520749339,0.170388021785422,0,0.439656701034247,0,0,0,0.171086837884329,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0.790446527591777,0.121792598380896,0.638341257770182,0,0,0.306345576763462,0.983617892129413,0.157054096250234,0,0,0,0.573409195690071,0,0.0620964029413835,0.415045904808692,0.37494122388632,0.151649117541648,1.7127920012698,0.235265819698172,0,0,0,0,0,0.189403005275089,0.251567901752575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0,0,0.176689145945881,0,0.168942440653073,0,0.345430341731199,0,0,0.584580926518165,0.265729680626726,0.163565394255844,0,0,0.211312123358627,0,0.213383459388282,0.861074898304078,0,0,0.419638523158333,0,0.127894371303652,0,0,0,0,0,0,0,0,0.315446980005013,0,0,0,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| ||
|short_description=p6@RNF125 | |short_description=p6@RNF125 | ||
}} | }} |
Latest revision as of 05:55, 19 September 2015
Short description: | p6@RNF125 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RNF125_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 131bp_to_NM_017831, uc002kxf.1_5end |
EntrezGene: | RNF125 |
HGNC: | 21150 |
UniProt: | Q96EQ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 8.49e-30 | 5 |
germ line cell | 2.80e-21 | 7 |
germ cell | 2.80e-21 | 7 |
mast cell | 1.21e-10 | 5 |
basophil mast progenitor cell | 1.21e-10 | 5 |
neuron | 1.18e-09 | 6 |
neuroblast | 1.18e-09 | 6 |
electrically signaling cell | 1.18e-09 | 6 |
neuronal stem cell | 2.42e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
testis | 2.08e-12 | 8 |
male reproductive organ | 4.81e-09 | 11 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 2.89e-09 | 22 |
germ cell cancer | 2.89e-09 | 22 |
osteosarcoma | 6.12e-07 | 1 |
islet cell tumor | 9.73e-07 | 1 |
endocrine pancreas cancer | 9.73e-07 | 1 |
pancreatic endocrine carcinoma | 9.73e-07 | 1 |